# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1621.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1621 [L=297] Description: # 1741780 # 1742670 # -1 # ID=1_1621;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.262 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-33 115.9 0.0 2.3e-33 115.7 0.0 1.1 1 Peripla_BP_2 Periplasmic binding protein Domain annotation for each model (and alignments): >> Peripla_BP_2 Periplasmic binding protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 115.7 0.0 1.3e-37 2.3e-33 1 237 [. 43 270 .. 43 271 .. 0.95 Alignments for each domain: == domain 1 score: 115.7 bits; conditional E-value: 1.3e-37 EEE-SHHHHHHHHHTT-GGGEEEB-GGG--GGGGGGT..TS-B-BESSSB-HHHHHHH--SEEEE-GGG...GGGHHHHHHHS CS Peripla_BP_2 1 iaslspsvteillalGatdkvvgvdtttsdpldadkleeaivevgadgeidvEklaalkPDlvilskglgltdedeellksgi 83 i++++p+v eil+++G ++++v++++t++ ++ + v++g+ +++++Ek+++ kPDl+++s+++ + e + k g+ 23726_FusoPortal_Gene_1621 43 IIVTDPGVIEILFKIGGEKSIVAIAKTSRSKIYPSDKVDKLVSIGNVSNLNLEKVVEYKPDLIVVSSMM--LRNVEAIKKMGY 123 89**********************999988766666555******************************..************ PP -EEE----TTSHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHT--TT...-EEEEEEEETTE..EEEE-TTSTTTHHH CS Peripla_BP_2 84 ptvivessntgeslkeqiralgellgledeaeklvaeidsklaaaksaidse..kpkpvlvfggadeggyvvagsnsyigdll 164 ++++ + sn +++ ++i ++g + g++deaekl +e kl+++++ ++ k k +++f++++ + +++ns gd+l 23726_FusoPortal_Gene_1621 124 KVIVSNASNL-NGILDTISVTGIISGKKDEAEKLRKECSLKLEKFEKENTKKasKLKGAILFSTSPM---SAFSENSIPGDVL 202 ********97.****************************************************8888...************* PP HTS--EES-TT--STT-EEE-HHHHHHH--SEEEEEEHHHHT-S--HHHHT-SHHHHTSHHHHTT-EEEE-HH CS Peripla_BP_2 165 dalgieniaaeskkseyeeisaEqilasdpdvifvsgraeadnktgleflkenpllaelpAvkngrVyaldss 237 lg+ nia++ +++ +s+E+il+++pd + +++ + ++ ++++ + +++A kn++++ ldss 23726_FusoPortal_Gene_1621 203 KHLGVINIAENV-PGQRPILSPEYILKENPDFLAGAMS----LDDPQQIIEASNVIPKIKAGKNKNIFILDSS 270 ********9999.*********************9999....88888888889*****************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (297 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 859 (0.0514002); expected 334.2 (0.02) Passed bias filter: 465 (0.0278243); expected 334.2 (0.02) Passed Vit filter: 31 (0.00185495); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.24u 0.22s 00:00:00.46 Elapsed: 00:00:00.30 # Mc/sec: 2877.96 // [ok]