# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1641.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1641 [L=399] Description: # 1759771 # 1760967 # -1 # ID=1_1641;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.260 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-38 132.3 0.0 2.5e-38 132.1 0.0 1.0 1 Aminotran_1_2 Aminotransferase class I and II ------ inclusion threshold ------ 0.11 12.6 0.0 0.29 11.1 0.0 1.7 1 EFhand_Ca_insen Ca2+ insensitive EF hand Domain annotation for each model (and alignments): >> Aminotran_1_2 Aminotransferase class I and II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 132.1 0.0 3e-42 2.5e-38 47 363 .] 70 385 .. 45 385 .. 0.90 Alignments for each domain: == domain 1 score: 132.1 bits; conditional E-value: 3e-42 HHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETTT.T CS Aminotran_1_2 47 peleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseed.f 128 +e+ +a++ +++++ + ++++ ++ +++G +i +i +l n +d +++ p++ ++++ ++ g +v+ +l +e++ + 23726_FusoPortal_Gene_1641 70 DEYLNAVCNWYKNKFNWIIDKN-SIFYSPGILPAIGFVISAL-TNLEDGVIIQPPVFYPFSELIKGQGRTVINNNLINENGyY 150 5788999999998889999999.*******************.7*******************************99886637 PP EE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTST CS Aminotran_1_2 129 hldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeep 211 ++d+ +l e+ ++ +k+k+++++sphNP G v+t+eele++++++++ n ++++De++ ++ ++ ++ + + ++ ++ 23726_FusoPortal_Gene_1641 151 KIDFSDLREKASN-----PKNKLLILCSPHNPVGRVWTKEELEEIVKICQETNTYILSDEIHCDLTRKNIQHFP-IKTITNYK 227 *********8887.....4899**********************************************887777.******** PP TEEEEEESSSTTTSGGG-EEEEEE.EHHHHH.HHHHHHHHHTS.SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS Aminotran_1_2 212 nllivgslsKafGlaGeRvGyilg.naavvs.qlrklsrpfls.ssllqaavaaalsdallkqseleemrqrlqkrrkelrde 291 n++++ s sK f++aG+ ++ i++ ++++++ +l+ ++ +++ ++ +v+ ++ + +le+ + ++++ ++ + 23726_FusoPortal_Gene_1641 228 NIIVAVSPSKTFNVAGLPIASIIIdDEKLREiWLKETKNKYYIrFAPPLDMVLSIAAYNK-CGYWLEQVLDYIEDNFNFMEKY 309 ************************666777646899999999985555555554444433.445******************* PP HHHS..TEEEECCSCSSEEEEEETHH.CHHHHHHHHHHTCTEEEEEGGGGTS..TTEEEEECTTS-HHHHHHHHHHH CS Aminotran_1_2 292 Lael..glkvlasqsgmflltdlsae.takelskkLleevgvyvtpgtsftv..pgrlRitvAglteeeleelveal 363 L+e +++ +++++++ ++ + a+ + kel ++L++++ +++ g f++ g +Ri+v ++++ +lee ++++ 23726_FusoPortal_Gene_1641 310 LKENlpKINYKKPEGTYLAWVNFGAYvDYKELLDVLITKYDLLIESGHVFGKpgDGYFRISV-ACPRVYLEEGLKRI 385 *99999********************999***********************88899*****.99999999999887 PP >> EFhand_Ca_insen Ca2+ insensitive EF hand # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.0 3.5e-05 0.29 4 48 .. 183 228 .. 181 239 .. 0.89 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 3.5e-05 THHHHHCHHHHHCTTSSSEEHHHHHHH-TTCHH.HHHHCCSEEE-S CS EFhand_Ca_insen 4 saeqveeaFralaggKpYvTeedLrrellpeqa.eylierMpeysg 48 ++e++ee ++ ++ +Y+ ++ ++l+++++ + i++ ++y++ 23726_FusoPortal_Gene_1641 183 TKEELEEIVKICQETNTYILSDEIHCDLTRKNIqHFPIKTITNYKN 228 89*******************************8888888888875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (399 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 656 (0.0392532); expected 334.2 (0.02) Passed bias filter: 505 (0.0302178); expected 334.2 (0.02) Passed Vit filter: 42 (0.00251316); expected 16.7 (0.001) Passed Fwd filter: 2 (0.000119674); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.27u 0.24s 00:00:00.51 Elapsed: 00:00:00.33 # Mc/sec: 3514.87 // [ok]