# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_167.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_167 [L=401] Description: # 175728 # 176930 # -1 # ID=1_167;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.277 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.6e-88 295.4 0.1 2e-46 158.8 0.0 2.0 2 GDP_Man_Dehyd GDP-mannose 4,6 dehydratase 4.4e-64 216.1 0.0 1.4e-63 214.5 0.0 1.7 1 Epimerase NAD dependent epimerase/dehydratase family 5.3e-17 61.8 0.0 3.1e-15 56.0 0.1 2.1 2 Polysacc_synt_2 Polysaccharide biosynthesis protein 3.5e-14 52.3 0.3 4e-11 42.3 0.2 2.3 2 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomeras 3.1e-13 49.4 0.1 4.6e-11 42.3 0.1 2.2 1 NAD_binding_4 Male sterility protein 5.2e-10 38.8 0.1 8.9e-08 31.5 0.0 2.4 2 RmlD_sub_bind RmlD substrate binding domain 1.5e-05 24.5 0.0 0.00049 19.5 0.0 2.2 2 adh_short short chain dehydrogenase 0.00018 21.7 0.1 0.00033 20.8 0.1 1.4 1 Sacchrp_dh_NADP Saccharopine dehydrogenase NADP binding doma 0.0006 19.7 0.0 0.0011 18.9 0.0 1.4 1 KR KR domain 0.0093 15.4 0.1 0.016 14.7 0.1 1.4 1 NmrA NmrA-like family ------ inclusion threshold ------ 0.028 14.5 0.3 0.11 12.6 0.1 2.1 2 SH3BGR SH3-binding, glutamic acid-rich protein 0.028 14.7 0.0 0.072 13.4 0.0 1.6 1 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding doma 0.13 12.0 0.0 0.35 10.7 0.0 1.7 2 NAD_binding_10 NAD(P)H-binding Domain annotation for each model (and alignments): >> GDP_Man_Dehyd GDP-mannose 4,6 dehydratase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 134.8 0.0 3.1e-42 4e-39 1 138 [. 6 150 .. 6 157 .. 0.88 2 ! 158.8 0.0 1.6e-49 2e-46 139 332 .] 181 370 .. 176 370 .. 0.85 Alignments for each domain: == domain 1 score: 134.8 bits; conditional E-value: 3.1e-42 EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S CS GDP_Man_Dehyd 1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlykdpeaeleenlklvkgDltDssslerllaevqpdevynLAA 84 L+TG aGfiG+++++++l+k+ ++ +iv +s++++g++ +++++ +++++k+ k+D++D++++er+++e+++d v+n+AA 23726_FusoPortal_Gene_167 6 LVTGAAGFIGANFLKYILKKHKDIKVIV-VDSLTYAGNLGTIKEEL---KDSRVKFEKVDIRDRKEIERVFSENKVDYVVNFAA 85 9*******************99987765.6678899***9998643...367******************************** PP ---HHHHTTSHHCHHHHHTHHHHHHHHHHHHCT.............TTSEEEEEEEGGGG-SBSS CS GDP_Man_Dehyd 85 qshVdvsfekPeytaevnvlGtlrLLeairalgle...........kkvrfyqaStsEvYGkvqe 138 +shVd+s+e+P+ + e+n+lGt++LL+ +++++ ++++++q+St+EvYG++++ 23726_FusoPortal_Gene_167 86 ESHVDRSIENPQIFLETNILGTQNLLDNAKKAWTVskdengypiyrEDIKYLQVSTDEVYGSLSK 150 ********************************8744445555555589**************975 PP == domain 2 score: 158.8 bits; conditional E-value: 1.6e-49 SSB-TTS-----SHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEESTTS-TTSCCCHHHHHHHHHHTTS-C-EEETTTT-EEE CS GDP_Man_Dehyd 139 vpqtEttpfyPrsPYaaaKlyaewivvnyreayglfavngilfNhesprrgetfvtrkitraiakialgkqevlvlGnldakRd 222 +tE++p++PrsPY+a+K a++iv++y e+y+l++ +++++N+++p+ +f++++i+ +i +i++gk +++v+G++ ++Rd 23726_FusoPortal_Gene_167 181 NFFTEESPVDPRSPYSASKTGADHIVIAYGETYKLPINITRCSNNYGPY---HFPEKLIPLMIKNILEGK-KLPVYGKGGNVRD 260 579**********************************************...7****************9.7889********* PP EEEHHHHHHHHHHHHHCSS---EEE-TT-EEECHHCHHCCHHCCCHHHHHH...................HTGGCCCEECCG-- CS GDP_Man_Dehyd 223 wghvkDyveamwlmlqqdkpedyviatgetysvrefvelaflelgkeiewegk....geeevgrake...sgkvvvevdpkyfr 299 w++v+D++++++l+l++ k +ge y++++f+e ++++++k ++ k +++e +++ + s+ + ++++++r 23726_FusoPortal_Gene_167 261 WLYVEDHCKGIDLVLREAK-------SGEIYNIGGFNEEKNINIVKLVIDVLKeeitNNDEYKKVLKtdiSNINYDLITYVQDR 337 ****************987.......8*************999997554433200003344444433111444455678899** PP SS--SBB-B-THHHHHHH----SS-HHHHHHHH CS GDP_Man_Dehyd 300 ptevdlllgdatkakeeLgWkpkvsfeelvrem 332 +++ +++++++++ ++LgW p+++fe+++r++ 23726_FusoPortal_Gene_167 338 LGHDMRYAINPSRIAKDLGWYPETDFETGIRKT 370 ******************************986 PP >> Epimerase NAD dependent epimerase/dehydratase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 214.5 0.0 1.1e-66 1.4e-63 2 241 .] 6 287 .. 5 287 .. 0.94 Alignments for each domain: == domain 1 score: 214.5 bits; conditional E-value: 1.1e-66 EEETTTSHHHHHHHHHHHHCT..SEEEEEES-STTTTCHHCHHC......EEEE--TT-HHHHHHHHHHHT-SEEEE--S---H CS Epimerase 2 lVtGatGfiGsalvkallekg..yevigldrlssasntarledl......elveldltdrsalerlfkeeqpdavihlAavggv 77 lVtGa+GfiG++++k++l+k+ ++vi++d+l++a+n + +++ ++ ++d++dr+++er+f+e+++d+v+++Aa+++v 23726_FusoPortal_Gene_167 6 LVTGAAGFIGANFLKYILKKHkdIKVIVVDSLTYAGNLGTIKEElkdsrvKFEKVDIRDRKEIERVFSENKVDYVVNFAAESHV 89 8******************997788***************99999*************************************** PP HHHHHSHHHHHHHHTHHHHHHHHHHH...............HHTCTEEEEEEEGGGGT.......................... CS Epimerase 78 aassedpadfieknlqgtlnlleaar...............kagvkrllflsSsevYG.......................... 120 ++s+e+p+ f+e+n+ gt+nll+ a+ + ++ ++l++s++evYG 23726_FusoPortal_Gene_167 90 DRSIENPQIFLETNILGTQNLLDNAKkawtvskdengypiyREDI-KYLQVSTDEVYGslskdydepielviddedvkkvvknr 172 **************************9999999988888877788.*****************************999988665 PP .SBSSSS..BSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTSTTSHHHHHHHHHHCTSSSEE CS Epimerase 121 .kdaeqp..keettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngegevsrvipalirkilegkqevt 201 + + ++ t+++p+ p+spY+a+K+ ++++v ay ++y+l++ i+r++n+yGp+ ++++++ip +i++ilegk ++ 23726_FusoPortal_Gene_167 173 kN-LK-TygNNFFTEESPVDPRSPYSASKTGADHIVIAYGETYKLPINITRCSNNYGPY---HFPEKLIPLMIKNILEGK-KLP 250 31.22.14478888888******************************************...99****************.*** PP EETTST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEEES CS Epimerase 202 llgdgtalRdflyveDvaeaillvlehvdagdkgeiyniG 241 ++g+g ++Rd+lyveD++++i lvl++ ++geiyniG 23726_FusoPortal_Gene_167 251 VYGKGGNVRDWLYVEDHCKGIDLVLRE---AKSGEIYNIG 287 ***************************...7889*****9 PP >> Polysacc_synt_2 Polysaccharide biosynthesis protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.0 0.1 2.4e-18 3.1e-15 2 118 .. 6 117 .. 5 122 .. 0.87 2 ? 3.6 0.0 0.022 28 132 242 .. 189 300 .. 184 323 .. 0.71 Alignments for each domain: == domain 1 score: 56.0 bits; conditional E-value: 2.4e-18 EEETTTSHHHHHHHHHHHHH.B-SEEEEEES-HH..HHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEE CS Polysacc_synt_2 2 lvtGagGsiGselvrqilke.kpkkiillerdEl..klyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvf 82 lvtGa+G iG ++++ ilk+ k k+i++++ + +l +i++el k++++k+e d+rd++++e++++e kvd+v+ 23726_FusoPortal_Gene_167 6 LVTGAAGFIGANFLKYILKKhKDIKVIVVDSLTYagNLGTIKEEL----KDSRVKFE----KVDIRDRKEIERVFSENKVDYVV 81 8*****************996556777777665522566777776....68889898....78********************* PP E------HHHHHHSHHHHHHHHHHHHHHHHHHHHHT CS Polysacc_synt_2 83 haAAlKhVPlveenpleaiktNvlgtenvieaaiea 118 + AA hV enp ++tN+lgt+n+++ a++a 23726_FusoPortal_Gene_167 82 NFAAESHVDRSIENPQIFLETNILGTQNLLDNAKKA 117 *******************************99875 PP == domain 2 score: 3.6 bits; conditional E-value: 0.022 SS--SHHHHHHHHHHHHHHHGGG--SSS--EEEEEEE-EETTGT...TSSHHHHHHHHHTTSSEEES-T.T-EEEEE-HHHHHH CS Polysacc_synt_2 132 vnPtnvmGatKrlaekllqalakeseekktkfvvvRfGNVlgSr...GSviplFkkqikeggpvtvTdp.eitRyfmtieeavq 211 v+P + + a+K a+ +++a+ ++ k + ++R N g +ipl k i eg++++v + +R ++ +e+ ++ 23726_FusoPortal_Gene_167 189 VDPRSPYSASKTGADHIVIAYGETY---KLPINITRCSNNYGPYhfpEKLIPLMIKNILEGKKLPVYGKgGNVRDWLYVEDHCK 269 7788889999999999999998887...6677777777776654122579****************866257899999999998 PP HHHHHHHH--SS-EEEE--.-EEEHHHHHHH CS Polysacc_synt_2 212 LvlqalalakggeifvldmGepvkivdlaka 242 + l +ak+gei+ + k ++++k 23726_FusoPortal_Gene_167 270 GIDLVLREAKSGEIYNIGGFNEEKNINIVKL 300 8888888888888885433333333334444 PP >> 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.3 0.2 3.1e-14 4e-11 1 107 [. 6 116 .. 6 120 .. 0.78 2 ! 7.8 0.0 0.0011 1.4 141 222 .. 188 266 .. 166 275 .. 0.81 Alignments for each domain: == domain 1 score: 42.3 bits; conditional E-value: 3.1e-14 3Beta_HSD 1 vvtGggGFlGrrivkeLlrleelkevrvlD.lresselleelskvnvktk.kvlegDvrdkekleealeg..vdvvihtasivd 80 +vtG++GF+G++ k +l+ ++ +v v+D l +l ++++ + k+ ++D+rd +++e++ + vd v+ a+ + 23726_FusoPortal_Gene_167 6 LVTGAAGFIGANFLKYILKKHKDIKVIVVDsLTYAGNLGTIKEELKDS-RvKFEKVDIRDRKEIERVFSEnkVDYVVNFAAESH 88 79******************9988888999533333333333344444.336***************97622677999999999 PP 3Beta_HSD 81 vag.kleedeilevnvkGTqnvleacvk 107 v + +++le n+ GTqn+l+ ++k 23726_FusoPortal_Gene_167 89 VDRsIENPQIFLETNILGTQNLLDNAKK 116 987356778889************9987 PP == domain 2 score: 7.8 bits; conditional E-value: 0.0011 3Beta_HSD 141 esthkdayaesKalaEklvlkangrtlknggrllTcaLRpagiyGegd..kllvpllkkllksglalfkigekealsdrvYvgN 222 + + ++y+ sK a+++v++ + +l R + yG+++ ++l pl+ k + +g++l +g+ ++ d+ Yv+ 23726_FusoPortal_Gene_167 188 PVDPRSPYSASKTGADHIVIAYGE-----TYKLPINITRCSNNYGPYHfpEKLIPLMIKNILEGKKLPVYGKGGNVRDWLYVED 266 4457899********999986555.....44666777789999***9755788999999999999*****************95 PP >> NAD_binding_4 Male sterility protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.3 0.1 3.5e-14 4.6e-11 1 205 [. 7 224 .. 7 234 .. 0.82 Alignments for each domain: == domain 1 score: 42.3 bits; conditional E-value: 3.5e-14 EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTSGGGG--HHHHHHH CS NAD_binding_4 1 lTGaTGFLGkvLlekLLrtqpevkiyllvRaksgeaaeeRleeelekkelfsallkelaerikvveGDlseprlGLseedlqel 84 +TGa GF+G+ +l+ +L++++++k++++ ++ l+ + ++++l+ +r+k+ + D+ + + +++++ 23726_FusoPortal_Gene_167 7 VTGAAGFIGANFLKYILKKHKDIKVIVV----DS------LTYAGNLGTIKEELK---DSRVKFEKVDIRDRK------EIERV 71 7********************8877765....23......455555577788887...999********9887......33333 PP ..HHH--EEEE--SS-S.STTSSE...EHHHHHHHHHHHHHHHT.............SSS--.-EEEEEEGGGTTS-TTT--SS CS NAD_binding_4 85 ..aeevdviihsaAtvnfdepyke...llrvNveGtrevlelak.............klkklkvllhvSTayvngeregeveek 150 ++vd +++ aA ++d+++++ +l++N++Gt+++l+ ak ++ +l+vST v+g ++ +e 23726_FusoPortal_Gene_167 72 fsENKVDYVVNFAAESHVDRSIENpqiFLETNILGTQNLLDNAKkawtvskdengypIYREDIKYLQVSTDEVYGSLSKDYDEP 155 23689***************998877799***************99999888887774444469******76666666666554 PP S-H......................HHH--EEEETTTCCCHHHHHHHHHHHHHHHHHHHH---EEEEEE-E CS NAD_binding_4 151 vyeege................keekldederaklkglpntYeqsKalaEklvrearrrsglpvvivRpsi 205 + k+ + ++++ + Y+ sK a+++v ++++ +lp++i R+s+ 23726_FusoPortal_Gene_167 156 IEL--ViddedvkkvvknrknlKTYGNNFFTEESPVDPRSPYSASKTGADHIVIAYGETYKLPINITRCSN 224 332..1346689******9887777777888999999999*****************************96 PP >> RmlD_sub_bind RmlD substrate binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.5 0.0 6.9e-11 8.9e-08 3 91 .. 5 116 .. 2 122 .. 0.91 2 ! 5.0 0.0 0.0081 10 110 155 .. 180 229 .. 130 253 .. 0.78 Alignments for each domain: == domain 1 score: 31.5 bits; conditional E-value: 6.9e-11 EEEESTTSHHHHHHHHHCTT..TSEEEEEE-TT.....................T--TTSHHHHHHHHHHH--SEEEE------ CS RmlD_sub_bind 3 ilvtGanGqlGseLakqlae..eglevlaltre.....................eldltdaeavaellkeakpdvvvnaAAyta 63 lvtGa G +G + k + + ++++v+ +++ ++d++d+++++++++e+k d vvn AA 23726_FusoPortal_Gene_167 5 YLVTGAAGFIGANFLKYILKkhKDIKVIVVDSLtyagnlgtikeelkdsrvkfeKVDIRDRKEIERVFSENKVDYVVNFAAESH 88 69***********9987755236777777776699************************************************* PP HHHHHHSHHHHHHHHTHHHHHHHHHHHH CS RmlD_sub_bind 64 vDkaEseeeaayavnaeavealAeaaaa 91 vD+ ++++ + n ++++l + a++ 23726_FusoPortal_Gene_167 89 VDRSIENPQIFLETNILGTQNLLDNAKK 116 *********************9888876 PP == domain 2 score: 5.0 bits; conditional E-value: 0.0081 TS-B-TTS----SSHHHHHHHHHHHHHHHH-SSE....EEEEE-SEESSS CS RmlD_sub_bind 110 krpYeeddetsPlnvYGrtKlaGEqavlaagkka....livRtswvygek 155 ++ ++e+++++P++ Y ++K + v a+g+++ i R s yg + 23726_FusoPortal_Gene_167 180 NNFFTEESPVDPRSPYSASKTGADHIVIAYGETYklpiNITRCSNNYGPY 229 5779***********************99776542222678888888763 PP >> adh_short short chain dehydrogenase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.5 0.0 3.8e-07 0.00049 1 114 [. 3 109 .. 3 126 .. 0.71 2 ? 2.7 0.0 0.055 71 143 162 .. 189 208 .. 184 222 .. 0.78 Alignments for each domain: == domain 1 score: 19.5 bits; conditional E-value: 3.8e-07 SEEEEETTTSHHHHHHHHHHHHT..T-EEEEEESCH..HHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESE CS adh_short 1 kvvlvtGassGIGraiakelake..Gakvvvvdrse..ekleevakelkeegakalaiqvDvtdreevealvekavkklgkldv 80 k+ lvtGa++ IG ++ k ++k+ ++kv+vvd+ +l ++++elk+ +++ + +vD++dr+e+e+++++ k+d 23726_FusoPortal_Gene_167 3 KTYLVTGAAGFIGANFLKYILKKhkDIKVIVVDSLTyaGNLGTIKEELKD--SRVKFEKVDIRDRKEIERVFSEN-----KVDY 79 6789*****************96336788888765411445566666665..68******************997.....8888 PP EEE---SS--SSGGGGSHHHHHHHHHHHTHHHHH CS adh_short 81 LvnNAGitgsgpfselseeewervievNltgvfl 114 +vn A+ + + s e+ + +e+N+ g+ + 23726_FusoPortal_Gene_167 80 VVNFAAES----HVDRSIENPQIFLETNILGTQN 109 88888773....2233334444455566655555 PP == domain 2 score: 2.7 bits; conditional E-value: 0.055 -TTBHHHHHHHHHHHHHHHH CS adh_short 143 vagvaaYsAsKaavagltrs 162 v ++YsAsK + ++++ + 23726_FusoPortal_Gene_167 189 VDPRSPYSASKTGADHIVIA 208 556799*******9987755 PP >> Sacchrp_dh_NADP Saccharopine dehydrogenase NADP binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.8 0.1 2.6e-07 0.00033 2 78 .. 6 85 .. 5 95 .. 0.82 Alignments for each domain: == domain 1 score: 20.8 bits; conditional E-value: 2.6e-07 EEE--.SHHHHHHHHHHHCTC.CT-GEEEEEES..SHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTS..SEEEE-SS CS Sacchrp_dh_NADP 2 liiGa.GsvGqavaellarhf.dvdaeitvadr..skeklealaakalgvrfeaialdaenyeavLaallkeg..dlvvnlsp 78 l+ Ga G++G +++++++++ d+ +++v+d + +l ++++++ +r++++++d+ ++++ ++++ +e+ d vvn + 23726_FusoPortal_Gene_167 6 LVTGAaGFIGANFLKYILKKHkDI--KVIVVDSltYAGNLGTIKEELKDSRVKFEKVDIRDRKE-IERVFSENkvDYVVNFAA 85 678999********9987655055..888888622455677888888*****************.****999999*****875 PP >> KR KR domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.9 0.0 8.3e-07 0.0011 2 76 .. 4 76 .. 3 94 .. 0.75 Alignments for each domain: == domain 1 score: 18.9 bits; conditional E-value: 8.3e-07 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHH CS KR 2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeik 76 tyl+tG++G +G + + +++k++ v++ s + + + +el+ + +v++ ++D+ d++++e++++e k 23726_FusoPortal_Gene_167 4 TYLVTGAAGFIGANFLKYILKKHKDIKVIVVDSLTYAGNLGTIKEELK--DSRVKFEKVDIRDRKEIERVFSENK 76 8********************995443333334222333332334444..6899****************99876 PP >> NmrA NmrA-like family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.7 0.1 1.2e-05 0.016 2 72 .. 6 82 .. 5 120 .. 0.87 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 1.2e-05 EESSTTSHHHHHHHHHHHHHT-EEEEEES-S......-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE-- CS NmrA 2 lviGaTGrqGksvvrallkaghkvralvRdt......kselakslkeaGvelvkgdlddkeslvealkgvdvvfsvt 72 lv+Ga+G +G+ + +++lk+ +++++v d+ + ++lk++ v++ k d+ d++ +++++++ +v ++v 23726_FusoPortal_Gene_167 6 LVTGAAGFIGANFLKYILKKHKDIKVIVVDSltyagnLGTIKEELKDSRVKFEKVDIRDRKEIERVFSENKVDYVVN 82 79********************************999999999************************9877766554 PP >> SH3BGR SH3-binding, glutamic acid-rich protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.1 8.3e-05 0.11 27 92 .. 50 120 .. 44 122 .. 0.76 2 ? -3.1 0.0 6.5 8.3e+03 38 52 .. 308 322 .. 301 330 .. 0.65 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 8.3e-05 HHHTT--EEEEETTT.-HHHHHHHHHCS....T-CCCS-SSSS--S-EEEETTEEEEEHHHHHHHHTTT-H CS SH3BGR 27 LdakkiefdevDitk.deeerelmrena....apeekkpengkplPPqifnedeYcGDydaffeakeentl 92 L +++f++vDi + +e er + ++++ + + + +++ Pqif e + +G + ++ak + t+ 23726_FusoPortal_Gene_167 50 LKDSRVKFEKVDIRDrKEIERVFSENKVdyvvNFAAESHVDRSIENPQIFLETNILGTQNLLDNAKKAWTV 120 56689*********95666666666666665433344556677889**************99999988776 PP == domain 2 score: -3.1 bits; conditional E-value: 6.5 ETTT-HHHHHHHHHC CS SH3BGR 38 Ditkdeeerelmren 52 +it+++e +++++ + 23726_FusoPortal_Gene_167 308 EITNNDEYKKVLKTD 322 566666666666655 PP >> Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 0.0 5.6e-05 0.072 4 73 .. 7 74 .. 5 93 .. 0.80 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 5.6e-05 EETTTSHHHHHHHHHHHC.TSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEEGGGGGCTT-SEEEE- CS Semialdhyde_dh 4 ivGatGyvGqellrlLee.hpevelvvllsssrsaGkklaeavkaleegkdlkvedvdeeelkevdivfla 73 + Ga G +G+++l+++ + h++++++v+ s + aG+ + + + + + +k+e+vd+ + ke++ vf+ 23726_FusoPortal_Gene_167 7 VTGAAGFIGANFLKYILKkHKDIKVIVVDSLTY-AGNLGTIK--EELKDSRVKFEKVDIRDRKEIERVFSE 74 67***********988887********999888.88755444..345689999999999999999999975 PP >> NAD_binding_10 NAD(P)H-binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.7 0.0 0.00027 0.35 1 88 [. 9 117 .. 9 120 .. 0.71 2 ? -3.4 0.0 5.4 6.9e+03 54 81 .. 264 301 .. 256 308 .. 0.55 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 0.00027 TTTSHHHHHHHHHHHHC.T-EEEEEETTHHHCH........HHHCTTTCEEEE--TT.CCHHHHHHT..T-SEEEES---TCCH CS NAD_binding_10 1 GAtGkvGrllvkellargghevtalvRnpekla........eleaeeglevvegdvtdvedlaealk..gadaVvsalggggkd 74 GA G +G +k +l+++ +++++v ++ a el ++++++ ++d+ d ++++++++ +d Vv ++ ++ d 23726_FusoPortal_Gene_167 9 GAAGFIGANFLKYILKKH-KDIKVIVVDSLTYAgnlgtikeEL-KDSRVKFEKVDIRDRKEIERVFSenKVDYVVNFAAESHVD 90 9****************6.677776666333222333333345.579*******************833567666666555554 PP HHH.............HHHHHHHHHHC CS NAD_binding_10 75 eeg.............aknivdaakaa 88 + + ++n++d ak+a 23726_FusoPortal_Gene_167 91 RSIenpqifletnilgTQNLLDNAKKA 117 444455567777889999999999986 PP == domain 2 score: -3.4 bits; conditional E-value: 5.4 HHHHHTT-SEEEES---TCC......HHHH....HHHH CS NAD_binding_10 54 laealkgadaVvsalggggk......deeg....akni 81 +++ +kg+d V+ + +g+ +ee +k + 23726_FusoPortal_Gene_167 264 VEDHCKGIDLVLREAKSGEIyniggfNEEKniniVKLV 301 67788888888887755554444444223222334444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (401 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 869 (0.0519986); expected 334.2 (0.02) Passed bias filter: 511 (0.0305768); expected 334.2 (0.02) Passed Vit filter: 53 (0.00317137); expected 16.7 (0.001) Passed Fwd filter: 13 (0.000777884); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 13 [number of targets reported over threshold] # CPU time: 0.30u 0.24s 00:00:00.54 Elapsed: 00:00:00.32 # Mc/sec: 3642.87 // [ok]