# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1682.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1682 [L=226] Description: # 1802469 # 1803146 # -1 # ID=1_1682;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.211 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.7e-15 56.4 13.2 1.8e-14 54.2 13.2 1.9 1 SMC_ScpA Segregation and condensation protein ScpA ------ inclusion threshold ------ 0.16 11.7 0.1 0.25 11.0 0.1 1.3 1 Peptidase_S3 Alphavirus core protein 0.35 10.7 7.4 0.05 13.5 1.9 2.4 3 Alpha-2-MRAP_N Alpha-2-macroglobulin RAP, N-terminal domain Domain annotation for each model (and alignments): >> SMC_ScpA Segregation and condensation protein ScpA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 54.2 13.2 3.2e-18 1.8e-14 1 230 [. 21 220 .. 21 224 .. 0.84 Alignments for each domain: == domain 1 score: 54.2 bits; conditional E-value: 3.2e-18 HHHHHHHHHTSSSS----HHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHS--XXXXXXXXXXXXXXXXXXXXXXXXXX CS SMC_ScpA 1 LiiakeldvtdvavakvtdqflayiktllnkleleesteylviastlvelKaasLlpleqveeeedeeleleelrdkLiarLl 83 Li ++++ + d+++ + +d++l+ +++ ++ ++e+ +++++ias l+e+K +Ll+l++ +e +L rL 23726_FusoPortal_Gene_1682 21 LIEKNKMKISDINISQLIDEYLEVLRVS-KRENIEIKSDFIIIASELIEIKTLNLLNLDKDKE----------KETNLRRRLE 92 78899*********************99.****************************987666..........2235667999 PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXX CS SMC_ScpA 84 eYrkykeeaklfkeleaerlksfskarsdleefikeveevavkieksvfklieafnkllkrakivalaekqiseleisieeql 166 e + +ke+ ++le+e s+s+ + ++ ik++ + + + ++ e +k + i ++e++ ++ i+e++ 23726_FusoPortal_Gene_1682 93 EHKLFKEVVPKVAKLEKEFNISYSRG--ESKRVIKKIAKDYDLTSLTTDDIFEVYKKYFDSVDISEVMELNLMKQ-YDIKEVM 172 9999************9999****99..78999999999544444444478889999999999999999877544.6777777 PP XXXX...............XXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXX CS SMC_ScpA 167 eellaqleqflqarlkevLldlrswvdlseLladnkledkkelvgvFlAlLeLiknqavaleQe 230 +++l ++ k + +++L+ e+k +l+ +FlA+LeL+k+ +++++ 23726_FusoPortal_Gene_1682 173 DNILM------KVYFK--------KWPIDDLFLE--AENKLHLIYIFLAILELYKDAKINIDNG 220 77773......33333........45799***99..9***********************9865 PP >> Peptidase_S3 Alphavirus core protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.1 4.5e-05 0.25 4 57 .. 136 188 .. 133 195 .. 0.89 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 4.5e-05 XSXSSEEEEEETTTEEEEEEEEETTEEEEETTS-SEESSCCHHCSEEEEECCCT CS Peptidase_S3 4 leadrlfevknedgdvigyallvedkvmkplhvkgvidnavlaklkfkksskyd 57 l +d +fev ++ d + + ++e ++mk +k v+dn l k+ fkk d 23726_FusoPortal_Gene_1682 136 LTTDDIFEVYKKYFDSVDISEVMELNLMKQYDIKEVMDN-ILMKVYFKKWPIDD 188 67899*********************************8.68899999976655 PP >> Alpha-2-MRAP_N Alpha-2-macroglobulin RAP, N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 1.9 8.9e-06 0.05 56 99 .. 49 92 .. 34 97 .. 0.88 2 ? -3.3 0.0 1.4 7.9e+03 96 108 .. 122 134 .. 116 140 .. 0.72 3 ? -2.1 0.1 0.61 3.4e+03 100 112 .. 161 173 .. 153 177 .. 0.80 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 8.9e-06 Alpha-2-MRAP_N 56 evklksLysdLkiqdkeElaykklkaegkdkdgekEaelrrkli 99 + + ++ sd i e ++ k l+ ++dkd+ekE++lrr+l 23726_FusoPortal_Gene_1682 49 KRENIEIKSDFIIIASELIEIKTLNLLNLDKDKEKETNLRRRLE 92 555567889999999999***********************996 PP == domain 2 score: -3.3 bits; conditional E-value: 1.4 Alpha-2-MRAP_N 96 rkligilskYgll 108 r +++i + Y+l+ 23726_FusoPortal_Gene_1682 122 RVIKKIAKDYDLT 134 6677888888885 PP == domain 3 score: -2.1 bits; conditional E-value: 0.61 Alpha-2-MRAP_N 100 gilskYgllehfd 112 +++++Y++ e +d 23726_FusoPortal_Gene_1682 161 NLMKQYDIKEVMD 173 5799999988777 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (226 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 925 (0.0553494); expected 334.2 (0.02) Passed bias filter: 310 (0.0185495); expected 334.2 (0.02) Passed Vit filter: 25 (0.00149593); expected 16.7 (0.001) Passed Fwd filter: 3 (0.000179512); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.24u 0.23s 00:00:00.47 Elapsed: 00:00:00.30 # Mc/sec: 2189.96 // [ok]