# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1697.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1697 [L=182] Description: # 1824870 # 1825415 # 1 # ID=1_1697;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.278 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9e-16 57.6 0.3 1.4e-15 57.0 0.3 1.3 1 YadA_anchor YadA-like membrane anchor domain ------ inclusion threshold ------ 0.043 13.8 0.4 0.55 10.2 0.4 2.1 1 OMP_b-brl Outer membrane protein beta-barrel domain Domain annotation for each model (and alignments): >> YadA_anchor YadA-like membrane anchor domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 57.0 0.3 1.7e-19 1.4e-15 3 59 .. 117 178 .. 115 179 .. 0.96 Alignments for each domain: == domain 1 score: 57.0 bits; conditional E-value: 1.7e-19 YadA_anchor 3 ptapgkfsvgaGvGgYkgesAvAvGasarsngkltvklgvat.....ssggsvgggvGvgyq 59 t+++kf+vgaGvG++ ++AvAvG+++ +++l+++++++t +s+ s+g+++Gv+y 23726_FusoPortal_Gene_1697 117 KTPADKFRVGAGVGHSAKNQAVAVGIGYAPTERLRLNTKISTttnstKSSRSNGISIGVSYD 178 6899********************************************************95 PP >> OMP_b-brl Outer membrane protein beta-barrel domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.2 0.4 6.6e-05 0.55 4 170 .. 105 171 .. 103 179 .. 0.44 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 6.6e-05 OMP_b-brl 4 lllaalsaaaaaassfggfyvggglglskvkvdgvgsdsgfgfgvgagyefndnvgvegglsysgdkdysgsgktdikinlls 86 +l +a++a ++++++ +f+vg+g+g s +k + ++ vg gy ++++++ ++s + + + 23726_FusoPortal_Gene_1697 105 ALGSAMGAVDLSKTPADKFRVGAGVGHS-AK--------NQAVAVGIGYAPTERLRLNTKISTTTNST--------------- 163 5556666666666666666666666533.11........23344444444444444444443322222............... PP OMP_b-brl 87 vpvnagyafnlsdsvlpyggaGlgytkvevdvsgngasdsdtdfglglgaGveyaladnwslkaeYrytdlksdadndlknnt 169 + + n+ 23726_FusoPortal_Gene_1697 164 ----------------------------------------------------------------------------KSSRSNG 170 ............................................................................2233333 PP OMP_b-brl 170 f 170 + 23726_FusoPortal_Gene_1697 171 I 171 3 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (182 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1053 (0.0630086); expected 334.2 (0.02) Passed bias filter: 427 (0.0255505); expected 334.2 (0.02) Passed Vit filter: 31 (0.00185495); expected 16.7 (0.001) Passed Fwd filter: 2 (0.000119674); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.24u 0.23s 00:00:00.47 Elapsed: 00:00:00.32 # Mc/sec: 1653.37 // [ok]