# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1701.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1701 [L=171] Description: # 1827520 # 1828032 # -1 # ID=1_1701;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.277 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-06 27.7 6.9 2.4e-06 27.4 6.9 1.1 1 DUF5105 Domain of unknown function (DUF5105) ------ inclusion threshold ------ 0.097 12.3 0.4 0.097 12.3 0.4 1.8 2 DUF1366 Protein of unknown function (DUF1366) 0.13 12.0 2.6 1.8 8.2 1.1 2.1 2 Dna2 DNA replication factor Dna2 0.19 11.5 3.1 5.4 6.8 0.4 2.1 2 Cas_APE2256 CRISPR-associated protein (Cas_APE2256) 0.22 11.2 4.2 0.35 10.6 4.2 1.3 1 Antimicrobial12 Pleurocidin family Domain annotation for each model (and alignments): >> DUF5105 Domain of unknown function (DUF5105) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.4 6.9 7.2e-10 2.4e-06 48 176 .. 27 152 .. 20 162 .. 0.72 Alignments for each domain: == domain 1 score: 27.4 bits; conditional E-value: 7.2e-10 HHHHHHHHHHTT--GGGGG..SHHHHHHHHHHHHHHHHH-EEEEEEEEEETTEEEEEEEEE-EE-TT.HHHHHHHHHHHHHTT CS DUF5105 48 esfkksfkralgyssssvt..dkeldnlfkalkealkekakvetkvvsisgdkAeVevtvkpidlse.lkdkleeekeeylde 127 ++f++ fk+ ++ ++++ d+ +++ e+ ka+++ + v+ +gd+ e +vt+k ++l + +++++ e+y + 23726_FusoPortal_Gene_1701 27 KAFEERFKEFNSVLTKQMEgaDEGSKKMA----EI-ISKATYTVNKVEEKGDNSELNVTIKAVNLGKyVNEYITAATEKYGVN 104 33333333333322222221244444444....43.46899***********************9652777777777777766 PP -TT--HHHHHHHHHHHHHHHHTT--B-S--EEEEEEEEE-TTS-EE--T CS DUF5105 128 nksiskeelekkaldiyteelkkaeasssektvevklkkkgddkWkldl 176 ++ +ee k+++d++t++l++ ++ ++v+v+++k+ ++ W + + 23726_FusoPortal_Gene_1701 105 VSADKQEEFNKFSVDYFTNVLNDKNIEYVDTEVNVQMQKS-EEGWIITN 152 6666678999******************************.78898865 PP >> DUF1366 Protein of unknown function (DUF1366) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.4 2.9e-05 0.097 64 105 .. 26 71 .. 18 83 .. 0.85 2 ? -1.0 0.1 0.39 1.3e+03 83 104 .. 105 126 .. 88 146 .. 0.64 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 2.9e-05 DUF1366 64 qrAenEkFneld....eliekakatiektEemlkaatetLneiidk 105 q+A +E+F+e++ +++e a++ +k+ e ++ at t+n++ +k 23726_FusoPortal_Gene_1701 26 QKAFEERFKEFNsvltKQMEGADEGSKKMAEIISKATYTVNKVEEK 71 9*********998777888889999999999999999999987655 PP == domain 2 score: -1.0 bits; conditional E-value: 0.39 DUF1366 83 atiektEemlkaatetLneiid 104 + +k+Ee k+ ++++ 23726_FusoPortal_Gene_1701 105 VSADKQEEFNKFSVDYFTNVLN 126 4566667666666555555544 PP >> Dna2 DNA replication factor Dna2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.2 1.1 0.00054 1.8 97 177 .. 37 119 .. 34 143 .. 0.74 2 ? 4.0 0.1 0.01 35 39 58 .. 141 160 .. 120 163 .. 0.71 Alignments for each domain: == domain 1 score: 8.2 bits; conditional E-value: 0.00054 Dna2 97 qkalleeeldkekleelldelleknleelyalglteeeakeeikekleeiekwakkyvkksnka..kakkekkkekkeklsis 177 ++l+++ +++ ++++ e+++k +++ +++++ ++ + ++ k+ ++ k++++y+++ ++ +++++k+e+ +k+s++ 23726_FusoPortal_Gene_1701 37 NSVLTKQMEGADEGSKKMAEIISKATYTVNKVEEKGDNSELNVTIKAVNLGKYVNEYITAATEKygVNVSADKQEEFNKFSVD 119 5667776667777889999***************************************9655540045555555555588884 PP == domain 2 score: 4.0 bits; conditional E-value: 0.01 Dna2 39 iidnesnllIlhPdlLvsaT 58 + ++e++ +I++P+ +vsaT 23726_FusoPortal_Gene_1701 141 MQKSEEGWIITNPNDIVSAT 160 3345889************9 PP >> Cas_APE2256 CRISPR-associated protein (Cas_APE2256) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 0.2 0.0034 12 51 99 .. 34 80 .. 26 84 .. 0.79 2 ? 6.8 0.4 0.0016 5.4 38 95 .. 86 148 .. 80 153 .. 0.75 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.0034 Cas_APE2256 51 aevevveieklsdlgreeFreglrnLveklarevknkkregekvlinaT 99 e + v +++++ ++++ ++ + +++ k+++ v++ +++g++ +n+T 23726_FusoPortal_Gene_1701 34 KEFNSVLTKQMEGADEG--SKKMAEIISKATYTVNKVEEKGDNSELNVT 80 44555555666666666..889*********************999998 PP == domain 2 score: 6.8 bits; conditional E-value: 0.0016 Cas_APE2256 38 vaeilkeylee....egaevevveieklsdlgreeFreglrn.Lveklarevknkkregekvl 95 +++++ey++ g++v+ ++e+ ++++ + F + l++ +e +++ev+ + +++e+ + 23726_FusoPortal_Gene_1701 86 LGKYVNEYITAatekYGVNVSADKQEEFNKFSVDYFTNVLNDkNIEYVDTEVNVQMQKSEEGW 148 567777777776643666777777888***********9976369999999999888888754 PP >> Antimicrobial12 Pleurocidin family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 4.2 0.0001 0.35 1 16 [. 1 16 [. 1 18 [. 0.94 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 0.0001 XXXXXXXXXXXXXXXX CS Antimicrobial12 1 MklaalFLVLsLVVLM 16 Mk + +LVLsLVVLM 23726_FusoPortal_Gene_1701 1 MKKILRYLVLSLVVLM 16 899999********** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (171 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1131 (0.0676759); expected 334.2 (0.02) Passed bias filter: 518 (0.0309957); expected 334.2 (0.02) Passed Vit filter: 55 (0.00329105); expected 16.7 (0.001) Passed Fwd filter: 5 (0.000299186); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.29u 0.25s 00:00:00.54 Elapsed: 00:00:00.41 # Mc/sec: 1212.45 // [ok]