# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1704.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1704 [L=98] Description: # 1830212 # 1830505 # 1 # ID=1_1704;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.221 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.1e-30 103.2 8.0 5.9e-30 103.0 8.0 1.0 1 DUF997 Protein of unknown function (DUF997) 4.5e-05 23.3 0.9 5.5e-05 23.0 0.9 1.1 1 DctQ Tripartite ATP-independent periplasmic transporters Domain annotation for each model (and alignments): >> DUF997 Protein of unknown function (DUF997) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 103.0 8.0 7.1e-34 5.9e-30 1 74 [. 13 87 .. 13 89 .. 0.98 Alignments for each domain: == domain 1 score: 103.0 bits; conditional E-value: 7.1e-34 DUF997 1 qankEalltllltllyflwwllfaYllgskeveey.yilglPlWfflscillpilfivlvillvkfvFkdipLdd 74 q+nkE+l+t++l+l+yf+ww++faY ++s++veey yilglP Wff+sc++++il+ +lv++++kf+Fkdi++d+ 23726_FusoPortal_Gene_1704 13 QINKEVLITIVLYLIYFIWWYYFAYEYSSDNVEEYkYILGLPEWFFYSCVVGLILINILVYICIKFFFKDIDFDK 87 99***********************************************************************98 PP >> DctQ Tripartite ATP-independent periplasmic transporters, DctQ component # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.0 0.9 6.6e-09 5.5e-05 70 123 .. 19 74 .. 12 82 .. 0.80 Alignments for each domain: == domain 1 score: 23.0 bits; conditional E-value: 6.6e-09 DctQ 70 dllallfaavliwagw..levaaalfeettpvlglplwwvylvlpigaallalval 123 ++ ++l+++++iw+ + +e+++ + ee +++lglp w++y++++ ++ +lv++ 23726_FusoPortal_Gene_1704 19 LITIVLYLIYFIWWYYfaYEYSSDNVEEYKYILGLPEWFFYSCVVGLILINILVYI 74 5677788888888888999**********************776655555555444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (98 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1110 (0.0664193); expected 334.2 (0.02) Passed bias filter: 461 (0.027585); expected 334.2 (0.02) Passed Vit filter: 42 (0.00251316); expected 16.7 (0.001) Passed Fwd filter: 2 (0.000119674); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.24u 0.24s 00:00:00.48 Elapsed: 00:00:00.33 # Mc/sec: 863.30 // [ok]