# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1725.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1725 [L=306] Description: # 1850601 # 1851518 # -1 # ID=1_1725;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.5e-61 206.5 34.3 5.2e-61 206.3 34.3 1.0 1 ABC-3 ABC 3 transport family 8.3e-10 38.1 31.2 8.3e-10 38.1 31.2 1.5 1 FecCD FecCD transport family Domain annotation for each model (and alignments): >> ABC-3 ABC 3 transport family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 206.3 34.3 6.2e-65 5.2e-61 7 257 .. 16 276 .. 10 277 .. 0.97 Alignments for each domain: == domain 1 score: 206.3 bits; conditional E-value: 6.2e-65 ABC-3 7 rallasilvslacallgsfvvlrrqsllgdalsHaalpGvalayllgvn.....lllgailvgliaavalellkrktklkedt 84 + l+ il+++++a++g+f+vl++ sllgd++sHa+l+G++la+l++ + lllga+++gli+ + +++ + k+k+k d+ 23726_FusoPortal_Gene_1725 16 VVTLGCILLGVVSAIIGTFAVLKKESLLGDGVSHASLAGICLAFLITGKkelyiLLLGALIIGLICIFLIHYTQLKSKVKFDS 98 567899******************************************99999999*************************** PP ABC-3 85 aigivlsvflalglvlvslikk....skvdldsyLfGniltisqedliliaiieavvllllllfwkelllitfdeelAkvegl 163 ai+++ls+f++lglvl+++ kk k++l++++fG++ t+ +d++li+++ ++++ l+llfwke+ + f ++Ak+ g+ 23726_FusoPortal_Gene_1725 99 AIALMLSTFFGLGLVLLTYLKKipgaKKAGLNRFIFGQASTLVVKDIYLIIVVGLILIFLVLLFWKEIKISIFQADYAKTLGI 181 *********************9999999******************************************************* PP ABC-3 164 svkllkllllalialavvvalqavGviLvialliiPaatArrltrslesllivAillglvsvvaGlllSyy.ldlatGavivl 245 + + +++l ++i++ v + +q++GviL++a+l+iP ++A++++++l+ + ++++++g +s ++G+++S++ + l+tG++i+l 23726_FusoPortal_Gene_1725 182 NSSKINFLVSTMIVINVIIGIQIAGVILMTAMLVIPPVAAKQWSKKLSVVTLLSAIIGGISGAMGSIISTFdVALPTGPLIIL 264 *********************************************************************75267********* PP ABC-3 246 vatllfllallv 257 v+ ++ l+++l+ 23726_FusoPortal_Gene_1725 265 VSGIFALISFLF 276 *********987 PP >> FecCD FecCD transport family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.1 31.2 9.9e-14 8.3e-10 78 305 .. 46 269 .. 37 277 .. 0.82 Alignments for each domain: == domain 1 score: 38.1 bits; conditional E-value: 9.9e-14 FecCD 78 Gissgaalgavlalllllgslslfalplaaflgallalllvllla.rkrkgasplkliLaGiavsallsaltsllllll..ne 157 G+s+++ +g++la+l++ g+ +l+ l+l a++ +l+ ++l+ +++ +++++ +++s++++ ll++l 23726_FusoPortal_Gene_1725 46 GVSHASLAGICLAFLIT-GKKELYILLLGALIIGLICIFLIHYTQlKSKVKFDSAI----ALMLSTFFGLGLVLLTYLKkiPG 123 89999999999999997.9************9999998888877733333333332....33444555444444444432277 PP FecCD 158 ealesilfwllGslsgaswskvllllvllllllllllllarkldllalgdetAkslGvnvervrllllllvalltavavalvG 240 ++ + ++ ++G+ s+ ++++l++v+ l+l++l+ll+ +++++ + ++ Ak+lG+n ++++l+ ++++ + + + ++G 23726_FusoPortal_Gene_1725 124 AKKAGLNRFIFGQASTLVVKDIYLIIVVGLILIFLVLLFWKEIKISIFQADYAKTLGINSSKINFLVSTMIVINVIIGIQIAG 206 889999***************************************************************************** PP FecCD 241 pigFvG.LivPhiarllvgadhrkllplsallGallllladllarlllsptelpvgivtaliGapf 305 +i + L++P +a + +++ + + +lsa++G++ ++ +++ + ++ lp+g ++ l+ ++f 23726_FusoPortal_Gene_1725 207 VILMTAmLVIPPVAAKQWSKKLSVVTLLSAIIGGISGAMGSIISTFDVA---LPTGPLIILVSGIF 269 **99984678********************************9987655...55555554444443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (306 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1224 (0.0732408); expected 334.2 (0.02) Passed bias filter: 403 (0.0241144); expected 334.2 (0.02) Passed Vit filter: 45 (0.00269268); expected 16.7 (0.001) Passed Fwd filter: 19 (0.00113691); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.35 # Mc/sec: 2541.58 // [ok]