# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1741.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1741 [L=399] Description: # 1863918 # 1865114 # -1 # ID=1_1741;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.292 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-155 516.5 5.6 4.1e-155 516.3 5.6 1.0 1 PGK Phosphoglycerate kinase Domain annotation for each model (and alignments): >> PGK Phosphoglycerate kinase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 516.3 5.6 2.4e-159 4.1e-155 1 379 [] 5 387 .. 5 387 .. 0.96 Alignments for each domain: == domain 1 score: 516.3 bits; conditional E-value: 2.4e-159 GGGS--TT-EEEEEE-----EECTTEES--HHHHHHHHHHHHHHHTT-EEEEEE--S--TTSS-.GGG-SHHHHHHHHHHHTT CS PGK 1 vkdldlkgkrvlvRvDfNvplkkegkitddtriraalpTikyllekgakvvllsHlgrpkgkkk.eklslkpvaerLsellgk 82 ++dldl++k+vl+RvDfNvp+k+ gkitd++ri +alpTiky+le++ak++l+sHlg++k +++ + slk+vae+Lsellgk 23726_FusoPortal_Gene_1741 5 ITDLDLNNKKVLMRVDFNVPMKD-GKITDENRIVQALPTIKYVLEHNAKLILFSHLGKVKIEEDkATKSLKAVAEKLSELLGK 86 689******************86.***********************************9776525678************** PP .EEEESSTTSHHHHHHHHT-TTT-EEEES-GGGS....TTTTTT-HHHHHHHHHT-SEEEE--GGGTTS--TTTTHHHHCS.. CS PGK 83 eVkfvedvvgeeveeaiaelkegevllLeNvRfy....keEekndeelakklasladvyVnDAFgtahrahaStvgiakvl.. 159 +V+f++++ ge++e+ai++lk+gevl++eN+Rf+ k+E+knd+el k++asl+dv+VnDAFgtahrahaS+vgia+ + 23726_FusoPortal_Gene_1741 87 NVTFIPETRGEKLESAINNLKSGEVLMFENTRFEdldgKKESKNDSELGKYWASLGDVFVNDAFGTAHRAHASNVGIAENIgn 169 **********************************9999999999*************************************65 PP EE.EE-HHHHHHHHHHHHHHHS--SSEEEEEEES-HHHCHHHHHHHTTT-SEEEEETCHHHHHHHHTT-B-TTSS--GGGHHH CS PGK 160 sa.aaGllmekElealskvlenperplvailGGakvsdkikvienLlekvdkliigGgmaytFlkaqgleigkslveedklel 241 ++ a+G+l+ekEl+++ ++++np+rpl+ailGGakvsdki+vienLl+k+dk++igG+m++tFlka+g +ig+slve+dkl+l 23726_FusoPortal_Gene_1741 170 GNsAVGFLVEKELKFIGEAVNNPKRPLIAILGGAKVSDKIGVIENLLTKADKILIGGAMMFTFLKAEGKNIGTSLVEDDKLDL 252 226******************************************************************************** PP HHHHHHHHHHHT-EEE--SEEEEESSTSTTS.-EEEECCG--TT-EEEEE-HHHHHHHHHHHCC-SEEEEES-SS-TTSGCCC CS PGK 242 akellekakkkgvkillpvDvvvakedaeke.akvveveaipedemalDigpktielfaeaikeaktvvwnGpmGvfeiekfa 323 ak+ll+k + ki+lpvD+v+a+e +++ ++v+v++ip+++m+lDig+kt++lf ++ik+aktvvwnGpmGvfe+++fa 23726_FusoPortal_Gene_1741 253 AKDLLAKSN---GKIVLPVDTVIASEFKNDIeFSTVDVDNIPNNKMGLDIGEKTVTLFDSYIKTAKTVVWNGPMGVFEMSNFA 332 ******987...89***********94444437888*********************************************** PP HHHHHHHHHHHHHCHTSEEEEESHHHHHHHHHTT-GGGSSEEESSSHHHHHHHCTS CS PGK 324 kGTkaiakalaeatkgalsivGGgdsaaaveklgladkvshvstGGgAsLelLegk 379 kGT +++ +a+ t+ a++i+GGgdsaaa+ +lg+adk++h+stGGgAsLe+Legk 23726_FusoPortal_Gene_1741 333 KGTIGVCESIANLTD-AVTIIGGGDSAAAAISLGYADKFTHISTGGGASLEFLEGK 387 ************996.***************************************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (399 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 524 (0.0313547); expected 334.2 (0.02) Passed bias filter: 434 (0.0259694); expected 334.2 (0.02) Passed Vit filter: 27 (0.00161561); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.26u 0.23s 00:00:00.49 Elapsed: 00:00:00.31 # Mc/sec: 3741.63 // [ok]