# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1746.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1746 [L=543] Description: # 1869554 # 1871182 # 1 # ID=1_1746;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.285 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-133 445.8 0.0 3e-133 445.7 0.0 1.0 1 Amidohydro_3 Amidohydrolase family 6.6e-10 38.7 0.1 3.6e-07 29.7 0.0 2.7 2 Amidohydro_1 Amidohydrolase family ------ inclusion threshold ------ 0.012 15.5 1.1 0.41 10.6 0.1 2.6 2 YolD YolD-like protein Domain annotation for each model (and alignments): >> Amidohydro_3 Amidohydrolase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 445.7 0.0 5.3e-137 3e-133 1 473 [] 47 539 .. 47 539 .. 0.99 Alignments for each domain: == domain 1 score: 445.7 bits; conditional E-value: 5.3e-137 Amidohydro_3 1 eviDakGrlvlPGFvDsHtHlagggvnlrllrlpdarvtslegvltavrdqagttpkgrwivgeGwdeaqfaeerfpyalael 83 e iD+kG++++PG+ D+H+Hl+++++nl++++l++ v++++++ +++++++ +kg+wi g+ +d++++ e+rfp +l+e+ 23726_FusoPortal_Gene_1746 47 ELIDLKGKMMIPGMADAHLHLYAYCQNLTFVDLSK--VHDINEMVSLMKEKVKNIKKGDWIKGVNFDQSKWKENRFP-TLQEM 126 68*********************************..****************************************.***** PP Amidohydro_3 84 devledapvllaaldtHaavrnsaaldlagiteatpdpaggeilrdangegatgllregafhlvldla..pl.areaeaaava 163 d +++d+pv++++++ Ha v+ns+al++agi+++ +++ gg++ d++g ++g+lre++++ + d + pl ++e ++++++ 23726_FusoPortal_Gene_1746 127 DSISKDNPVIIKRCCLHAVVANSKALEMAGIGKNYQAGSGGIVELDKDGM-PNGILREQSTKVFDDILpdPLkDIEVQKKIMQ 208 **************************************************.********999999999**777********** PP Amidohydro_3 164 aalaalasyGitsv.eagggnvsslddleplfeltaeeklplrvi..ikelldaaerlglplspgseeltigavklfadgvlg 243 +l ++ s+Git++ + +++ +++++d+ ++ + ++eeklplrv+ i el ++ ++++l++ +++++ga k+f dg++g 23726_FusoPortal_Gene_1746 209 DVLNDMSSKGITTIhTYAAKIWQYNEDISIYKNFEKEEKLPLRVTvcIDELFEPEILTEEKLNNPYRKVQLGAYKIFSDGSMG 291 *********************************************************************************** PP Amidohydro_3 244 srtalltepyf.....tgwpdfedealaelvaaadergldvaihaigdaavddvldafeaa...aekngnqdrr.......rl 311 sr+a+l+ py +g + f++e+l++ + a+e+gl+ aihaigd a+d++l+a+e++ ++++g++d + r+ 23726_FusoPortal_Gene_1746 292 SRSAALKAPYTddpenSGFMLFTQEELNNKILTAYEHGLQPAIHAIGDRALDMTLAAIEYTlktTKEKGMTDEEqkkrlpfRI 374 ************************************************************************99********* PP Amidohydro_3 312 ehaegvtesqiervaalqvaagvqpvfnf.edelldsrlgperargstpvkellnagvkvalgsDapvgpfdpwprigaavmr 393 +h ++++++ +er+++l + ++qp+f + + +++++r+g+er +gs+++k++ nag+ ++gsD+pv+++ p+ +i+aav+r 23726_FusoPortal_Gene_1746 375 IHVQMIDDNLLERMKKLPLVLDIQPIFLCtDLHWIEDRIGKERLKGSFALKTMENAGLIQTGGSDCPVETYEPLKGIYAAVTR 457 *********************************************************************************** PP Amidohydro_3 394 ktrrgg..evlrpdeelsleealalyTrgpAkalgledrkGtLevGadADlvvldadpldvdppelaearvrltvvdGrvvy 473 + ++g e + p+e+ls++eal++yT++ ++a+g+e GtLe+G+ ADl+vl++d++++d++e+++++v++t+v+G++v+ 23726_FusoPortal_Gene_1746 458 QDMEGYptEGFLPEERLSIYEALCMYTKNVHYATGQESVLGTLEIGKFADLTVLEKDLFKIDETEIKDVKVEQTYVAGNCVF 539 ***999**************************************************************************97 PP >> Amidohydro_1 Amidohydrolase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 6.3 0.0 0.00089 4.9 1 18 [. 55 72 .. 55 101 .. 0.77 2 ! 29.7 0.0 6.5e-11 3.6e-07 38 342 .. 208 536 .. 179 538 .. 0.60 Alignments for each domain: == domain 1 score: 6.3 bits; conditional E-value: 0.00089 EEEE-EEEEEEEEETTEC CS Amidohydro_1 1 ivlPGlIDaHvHleqsll 18 +++PG+ DaH+Hl+ +++ 23726_FusoPortal_Gene_1746 55 MMIPGMADAHLHLYAYCQ 72 689**********97753 PP == domain 2 score: 29.7 bits; conditional E-value: 6.5e-11 HHHHHHHHCTTEEEEEEECHSSTH..HHHHHHHHHCT...SSSEEEEEEESSEGGS......GHCCSHHHHHHHHHHCHHHHH CS Amidohydro_1 38 esgiktalksGtttvadmgattst..giealleaaee...lplglrilggkvsldr......gsaetskasreklkagaaeti 109 + ++ + + G+tt+ + a+ + + + +++e+ lpl + +++ + ++e + ++k+ ga 23726_FusoPortal_Gene_1746 208 QDVLNDMSSKGITTIHTYAAKIWQynEDISIYKNFEKeekLPLRVTVCID-----ElfepeiLTEEKLNNPYRKVQLGA---Y 282 55566666666666666666433355444444444444334444433333.....344444544444444444444442...3 PP HHTTTTCEE.CEEEECGSGCSHHH..........HHHHHHHHHHHCTTEEEEEETSSSCCHHHHHHHHTTTEEEETTTTCTTS CS Amidohydro_1 110 kgkadgvvk.valapheapafsde..........elkealkeakkrdlpvaiHaletkgevedaeaafgetiehgthlevaes 181 k+++dg + a +++++ +e el + + a +++l+ aiHa ++++ +++aa+ t + t +++ + 23726_FusoPortal_Gene_1746 283 KIFSDGSMGsRSAALKAPYTDDPEnsgfmlftqeELNNKILTAYEHGLQPAIHAIGDRALD-MTLAAIEYTLKT-TKEKGMTD 363 445555555555555555555555666666666599999999************7777774.666666633333.33333333 PP HCTTTGCCEEECTTCEEE...HHCCCHHHHHHHHHHEE..........HHHHHHHH.......CEHHHHHHHHHHHHTCEEEE CS Amidohydro_1 182 lglldeiklilahgvhlt...pteaellkerlkeagva..........hcpfsnsi.......lrsgrealrkaldeGvkvgl 244 + k + +++h+ ++ l er+k+ ++ + i +g++al+ + ++G++++ 23726_FusoPortal_Gene_1746 364 --E-EQKKRLPFRIIHVQmidDN----LLERMKKLPLVldiqpiflctD---LHWIedrigkeRLKGSFALKTMENAGLIQTG 436 ..1.2224555666666643233....4455344444466666653342...333355567777789999****999****** PP EEETT.......TSSBCCGHHHHHHHHHHHHHHSTTT....TCHHHHHHHHHHHHCTHHHHHHTT-TTTSSSS-TTSB--EEE CS Amidohydro_1 245 gtDga.......asgnslnlleelrlalklqrgllye....deegglslkealrmaTingAkalglddkvGsievGkdADlvv 316 g+D + +g + + +q + y +e ls++eal m+T n a g ++ +G++e Gk ADl+v 23726_FusoPortal_Gene_1746 437 GSD-CpvetyepLKGIYAAV--------TRQDMEGYPtegfLPEERLSIYEALCMYTKNVHYATGQESVLGTLEIGKFADLTV 510 ***.5555555544444433........333333332456756777************************************* PP ESSTTCGGGTTTCTSEEEEEEEETTE CS Amidohydro_1 317 vdldilaafvglkkdgnvkkvivkGk 342 ++ d+ + + kd +v +++v+G+ 23726_FusoPortal_Gene_1746 511 LEKDLFKIDETEIKDVKVEQTYVAGN 536 *7744222222235567788888887 PP >> YolD YolD-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.9 0.1 0.019 1.1e+02 55 89 .. 218 252 .. 212 257 .. 0.88 2 ? 10.6 0.1 7.3e-05 0.41 30 90 .. 316 375 .. 314 378 .. 0.91 Alignments for each domain: == domain 1 score: 2.9 bits; conditional E-value: 0.019 YolD 55 eleevtgyvekidelnkelkledeedeekkiklsd 89 ++++ y ki + n+ +++ +++++e+k++l+ 23726_FusoPortal_Gene_1746 218 GITTIHTYAAKIWQYNEDISIYKNFEKEEKLPLRV 252 678899999*********************99975 PP == domain 2 score: 10.6 bits; conditional E-value: 7.3e-05 YolD 30 eeineklqealeeeqpvtityyedgeleevtgyvekidelnkelkledeedeekkiklsdI 90 ee+n+k+ +a+e++ + i+ d+ l + +e+ +++ke ++dee+++ +++++ I 23726_FusoPortal_Gene_1746 316 EELNNKILTAYEHGLQPAIHAIGDRALDMTLAAIEYTLKTTKEKGMTDEEQKK-RLPFRII 375 9******************************************9999988776.9999865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (543 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 492 (0.0294399); expected 334.2 (0.02) Passed bias filter: 335 (0.0200455); expected 334.2 (0.02) Passed Vit filter: 25 (0.00149593); expected 16.7 (0.001) Passed Fwd filter: 3 (0.000179512); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.37 # Mc/sec: 4266.27 // [ok]