# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1747.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1747 [L=510] Description: # 1871210 # 1872739 # 1 # ID=1_1747;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.272 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.1e-69 233.6 0.0 7.8e-69 233.3 0.0 1.0 1 Amidohydro_3 Amidohydrolase family 2.6e-19 69.7 0.1 3.6e-14 52.7 0.1 2.5 2 Amidohydro_1 Amidohydrolase family ------ inclusion threshold ------ 0.077 13.0 0.0 0.72 9.9 0.0 2.1 2 Las1 Las1-like Domain annotation for each model (and alignments): >> Amidohydro_3 Amidohydrolase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 233.3 0.0 1.4e-72 7.8e-69 3 473 .] 51 506 .. 50 506 .. 0.91 Alignments for each domain: == domain 1 score: 233.3 bits; conditional E-value: 1.4e-72 Amidohydro_3 3 iDakGrlvlPGFvDsHtHlagggvnlrllrlpdarvtslegvltavrdqagttpkgrwivgeGwdeaqfaeerfpyalaelde 85 DakG+ vlPGF+DsH Hl + +n +++l + v+++e++ +++++ + ++ i g+ + ++ e++fp ++ ld+ 23726_FusoPortal_Gene_1747 51 LDAKGKSVLPGFIDSHFHLVQTAMNEEGINLHN--VSTFEEIGKKIKKANLK--SKESIFGVRLEKENLQEKKFP-DRKVLDQ 128 6********************************..**********9987765..7888988888***********.******* PP Amidohydro_3 86 vledapvllaaldtHaavrnsaaldlagiteatpdp.aggeilrdangegatgllregafhlvldla..plareaeaaavaaa 165 + ++p+ +++ld++++++n+ l + p ++ +i d++g+ +tg+ r++a+ +++ + +++ + ++ ++ + 23726_FusoPortal_Gene_1747 129 FSDNIPIWINNLDYQVSILNTYGLLY------YKIPfRIDGIELDEKGA-PTGIFRGKANATLRTNIlnSYPNKNREENIRKL 204 *************************8......77779************.********877777777776677777777**** PP Amidohydro_3 166 laalasyGitsv..eagggnvsslddleplfeltaeeklplrvi....ikelldaaerlglplspgseeltigavklfadgvl 242 + +l + Git+v + gg++ s++d + ++e a +p++++ l +++ ++l+ + l dg++ 23726_FusoPortal_Gene_1747 205 IPKLLKVGITTVnaMEGGYMY-SDKDANFIYEHIAD--FPIDIVlfyqC-------LDLDKVRE---KKLKRIGGSLYIDGTM 274 ************966666665.55555555554444..69999966542.......33333334...57778899******** PP Amidohydro_3 243 gsrtalltepyf.....tgwpdfedealaelvaaadergldvaihaigdaavddvldafeaaaekngnqdrr.rlehaegvte 319 g rta+lt +y +g +f++++l+e v++++ ++l++ +++igd a++ +l+a e+a ek g ++ r r+eh e + 23726_FusoPortal_Gene_1747 275 GARTAALTFEYNdkpgeMGRLIFSQKELNEFVEECYINKLQLSLYTIGDRAIEIALNAHEYALEKTGIKGLRhRMEHVELASL 357 *********************************************************************************** PP Amidohydro_3 320 sqiervaalqvaagvqpvfnf....edelldsrlgperargstpvkellnagvkvalgsDapvgpfdpwprigaavmrktrrg 398 sqi+r+++l+++ ++ p ++ ++++ +rlg++ ++ ++ ++e+++ g+++++gsD+ v+ ++p+ +i++av++ 23726_FusoPortal_Gene_1747 358 SQIKRAKKLGIIFSMNPTYERywggSNKMYSERLGKKYVE-TNKFREIIDGGLTLCGGSDSDVCDYNPFVGIHSAVNHPV--- 436 ****************988889***999******976554.588********************************9998... PP Amidohydro_3 399 gevlrpdeelsleealalyTrgpAkalgledrkGtLevGadADlvvldadpldvdppelaearvrltvvdGrvvy 473 ++++sl+ea++ yT ++A+a+++e +kG+Le+G+ AD+++ld+d++++d++ + +++v +t+++G+++y 23726_FusoPortal_Gene_1747 437 -----KKHRISLYEAIRIYTINGAYAIFEENNKGSLEIGKLADIIILDTDIFEIDKESIDKIKVLCTIKSGKILY 506 .....799*****************************************************************98 PP >> Amidohydro_1 Amidohydrolase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.2 0.0 3.4e-06 0.019 2 27 .. 58 85 .. 57 107 .. 0.77 2 ! 52.7 0.1 6.4e-18 3.6e-14 28 343 .. 192 504 .. 171 505 .. 0.74 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 3.4e-06 EEE-EEEEEEEEETTECSSS..GHHHHH CS Amidohydro_1 2 vlPGlIDaHvHleqsllrga..tledwl 27 vlPG+ID+H Hl q+++ ++ l+++ 23726_FusoPortal_Gene_1747 58 VLPGFIDSHFHLVQTAMNEEgiNLHNVS 85 89*************9866677666555 PP == domain 2 score: 52.7 bits; conditional E-value: 6.4e-18 SCTHHHHHHHHHHHHHHHCTTEEEEEEECHSSTH...HHHHHHHHHCTSSSEEEEEEESSEGGSGHCCSHHHHHHHHHHCHHH CS Amidohydro_1 28 vppetaaealesgiktalksGtttvadmgattst...giealleaaeelplglrilggkvsldrgsaetskasreklkagaae 107 p +e +++ i ++lk G+ttv++m + ++++ e + + p++ i++ + +ld ++ k +r +++ 23726_FusoPortal_Gene_1747 192 YPNKNREENIRKLIPKLLKVGITTVNAMEGGYMYsdkDANFIYEHIADFPID--IVLFYQCLDLDKVREKKLKRIGGSLYIDG 272 6777889999*******************98888888888888888888555..77777799985555455555544455544 PP HHHHTTTTCEE...CEEEECGSGCSHHHHHHHHHHHHHHCTTEEEEEETSSSCCHHHHHHHHTTTEEEETTTTCTTSHCTTTG CS Amidohydro_1 108 tikgkadgvvk...valapheapafsdeelkealkeakkrdlpvaiHaletkgevedaeaafgetiehgthlevaeslgllde 187 t ++ +++ + ++ ++ fs+ el e ++e+ +l+++ + +++++ a++a+ + le + 23726_FusoPortal_Gene_1747 273 TMGARTAALTFeynDKPGEMGRLIFSQKELNEFVEECYINKLQLSLYTIGDRAIE-IALNAHE------YALEK-------TG 341 4444444444320156667778899999999999999999999999997766664.6666666......24444.......66 PP CCEEECTTCEEEHHCCCHHHHHHHHHHEE..HHHHHHHH..............CEHHHHHHHHHHHHTCEEEEEEETTTSSBC CS Amidohydro_1 188 iklilahgvhltpteaellkerlkeagva..hcpfsnsi..............lrsgrealrkaldeGvkvglgtDgaasgns 254 ik +++++ h++ +++ ++r+k+ g+ + p+ +++ +++++r+ +d G+ g+D+ + + 23726_FusoPortal_Gene_1747 342 IKGLRHRMEHVELASLSQ-IKRAKKLGIIfsMNPTYERYwggsnkmyserlgkKYVETNKFREIIDGGLTLCGGSDSDVCDYN 423 788888888888554555.4556888888887777777777777777777777999********************8877777 PP CGHHHHHHHHHHHHHHSTTTTCHHHHHHHHHHHHCTHHHHHHTT-TTTSSSS-TTSB--EEEESSTTCGGGTTTCTSEEEEEE CS Amidohydro_1 255 lnlleelrlalklqrgllyedeegglslkealrmaTingAkalglddkvGsievGkdADlvvvdldilaafvglkkdgnvkkv 337 + + +++ + +++ ++++ +sl+ea+r++TingA a+ ++++Gs+e Gk AD++++d+di + ++ ++ +v ++ 23726_FusoPortal_Gene_1747 424 PFV---GIHSA-----VNHPVKKHRISLYEAIRIYTINGAYAIFEENNKGSLEIGKLADIIILDTDIFEIDKESIDKIKVLCT 498 755...66666.....444467777***************99999******************99884444455555567999 PP EETTEE CS Amidohydro_1 338 ivkGkl 343 i++Gk+ 23726_FusoPortal_Gene_1747 499 IKSGKI 504 999987 PP >> Las1 Las1-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.6 0.0 0.093 5.2e+02 24 69 .. 37 83 .. 18 110 .. 0.73 2 ? 9.9 0.0 0.00013 0.72 101 143 .. 325 368 .. 310 381 .. 0.76 Alignments for each domain: == domain 1 score: 0.6 bits; conditional E-value: 0.093 Las1 24 eeerkralarvs.awrqrgneklphavestalLleailsdeekklsa 69 e++++ +++ + + ++g++ lp ++s L++ +++e+ +l++ 23726_FusoPortal_Gene_1747 37 GEKYNSLINKTTiILDAKGKSVLPGFIDSHFHLVQTAMNEEGINLHN 83 4555555666662447889999****************999988755 PP == domain 2 score: 9.9 bits; conditional E-value: 0.00013 Las1 101 aasvaavakslglpatlVe.lRHeatHeelpslaeLreaakkaL 143 a+ +a a++ l++t ++ lRH++ H el sl+++++a k + 23726_FusoPortal_Gene_1747 325 AIEIALNAHEYALEKTGIKgLRHRMEHVELASLSQIKRAKKLGI 368 55666677778888776644******************988654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (510 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 597 (0.0357228); expected 334.2 (0.02) Passed bias filter: 414 (0.0247726); expected 334.2 (0.02) Passed Vit filter: 29 (0.00173528); expected 16.7 (0.001) Passed Fwd filter: 3 (0.000179512); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.36u 0.28s 00:00:00.64 Elapsed: 00:00:00.38 # Mc/sec: 3901.54 // [ok]