# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1770.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1770 [L=399] Description: # 1891265 # 1892461 # 1 # ID=1_1770;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.250 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-37 129.6 0.0 1.6e-37 129.4 0.0 1.1 1 Aminotran_1_2 Aminotransferase class I and II 0.00083 17.9 0.0 0.0013 17.2 0.0 1.2 1 Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme ------ inclusion threshold ------ 0.014 14.0 0.0 0.023 13.3 0.0 1.3 1 Aminotran_3 Aminotransferase class-III 0.024 13.8 0.0 0.032 13.4 0.0 1.3 1 Beta_elim_lyase Beta-eliminating lyase Domain annotation for each model (and alignments): >> Aminotran_1_2 Aminotransferase class I and II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 129.4 0.0 3.9e-41 1.6e-37 11 363 .] 42 387 .. 32 387 .. 0.84 Alignments for each domain: == domain 1 score: 129.4 bits; conditional E-value: 3.9e-41 TTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT CS Aminotran_1_2 11 ylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpg 93 + + t++e ++a ke +++ y + +++++ +a++k+++++++ ++k+e + +++G +i +i ++ 23726_FusoPortal_Gene_1770 42 MEFK----TPKEMVEALKE--RVEHGVFGY--SYVSDDYYNAVIKWHKEKHNYEIKKE-WLRFSTGVVTAIYWFINIF-TKVN 114 5555....88899999988..555555555..5556**********************.*******************.79** PP -EEEEEESS-THHHHHHHHTTSEEEEEEBEETTT.TEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHH CS Aminotran_1_2 94 deilvpdptyasyknilrlsggevvryplyseed.fhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklld 175 d +l+ +p+y +++n+++ + +++++ l++ ++ f++d e++e+++ e +n+ k+++ +sphNP G v+++eel k+l+ 23726_FusoPortal_Gene_1770 115 DSVLILTPVYYPFHNAVKDNNRKLITCDLKNTNGyFTIDYEEVEKKIVE---NNV--KLFIQCSPHNPAGRVWKEEELSKILE 192 ******************************996549*********9998...555..************************** PP HHHHTTEEEEEEETTTTCBSSSSHTHHH.HGGSTTSTT.EEEEEESSSTTTSGGG-EEEEEE.EHHHHHHHHHHHHHHTSSHH CS Aminotran_1_2 176 lakkynlllfvDeaYagfvfgsldavat.ranveeepn.llivgslsKafGlaGeRvGyilg.naavvsqlrklsrpflsssl 255 ++kk+n+l+++De++++ v++ ++++ +++ ++ + l++ + sK f+laG+ i++ n+++++ ++ +++ 23726_FusoPortal_Gene_1770 193 ICKKHNVLVISDEIHQDIVMKGYKHIPSaIVESGKYADnLITISAASKTFNLAGLIHSNIIIsNDKLRKKYDEEIKKINQTEC 275 *********************774444356666666556***************99888888788888888777777777444 PP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS..TEEEECCSCSSEEEEEETHH.CHHHHHHH.HHHTCTEEEEE CS Aminotran_1_2 256 lqaavaaalsdallkqseleemrqrlqkrrkelrdeLael..glkvlasqsgmflltdlsae.takelskk.Lleevgvyvtp 334 +a ++ + +le+ ++ ++ + +l++eL++ +++++ +++++++ dl++ + k+ +++++++++ 23726_FusoPortal_Gene_1770 276 NTLGMLATQVGYEKGEYWLENIKELIEGNFNYLKSELNKNipEIIITNLEGTYLVFLDLRKIiP-IDKVKEfIQDKCNLAIDF 357 33333333333333334********************999********************9942.33333358899******* PP GGGGTS..TTEEEEECTTS-HHHHHHHHHHH CS Aminotran_1_2 335 gtsftv..pgrlRitvAglteeeleelveal 363 g+ f++ +g++R+++ +++++ ++++ve + 23726_FusoPortal_Gene_1770 358 GEWFGKnfKGFIRMNL-ATDPQIVKKVVENI 387 ****************.99999999999976 PP >> Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.2 0.0 3.1e-07 0.0013 71 174 .. 93 205 .. 79 214 .. 0.79 Alignments for each domain: == domain 1 score: 17.2 bits; conditional E-value: 3.1e-07 EEESSHH.HHHHHHHHTTS-TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEEST.....TSHHHHHHHCCT.TEEEEEEESS CS Cys_Met_Meta_PP 71 lavssGm.aAiaaallallkaGdhivatddlYggtqrllekvlkklgievkfvdt.....sdleelekaike.ntklvylEtp 146 l +s+G+ +Ai + + k d +++ + +Y + ++ ++ +kl i+++ +t d ee+ek+i e n+kl+ +p 23726_FusoPortal_Gene_1770 93 LRFSTGVvTAIYWFINIFTKVNDSVLILTPVYYPFHNAVKDNNRKL-ITCDLKNTngyftIDYEEVEKKIVEnNVKLFIQCSP 174 6688886256666666677779*****************9998885.5555554433555789999998877599999999** PP -TTTT---...-HHHHHHHHHHTT-EEEEEG CS Cys_Met_Meta_PP 147 tnpllkvv...DieaiaklakkagvlvvvDn 174 np +v + +i++++kk++vlv+ D 23726_FusoPortal_Gene_1770 175 HNPAGRVWkeeELSKILEICKKHNVLVISDE 205 ***87764333899*************9986 PP >> Aminotran_3 Aminotransferase class-III # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 5.5e-06 0.023 212 235 .. 184 207 .. 174 214 .. 0.87 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 5.5e-06 CCHHHHHHHHHHHHT-EEEEE-TT CS Aminotran_3 212 peflaklrelckkhdvllivDEvq 235 +e l+k+ e+ckkh+vl+i DE+ 23726_FusoPortal_Gene_1770 184 EEELSKILEICKKHNVLVISDEIH 207 5568999***************95 PP >> Beta_elim_lyase Beta-eliminating lyase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 0.0 7.7e-06 0.032 101 167 .. 141 204 .. 128 307 .. 0.87 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 7.7e-06 E-EBTT...TBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEE CS Beta_elim_lyase 101 lknkea...GkmdlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlD 167 ++ k++ ++d e++e++i e +++kl + +n +G+v++ eel ++ +i+kk+++ ++ D 23726_FusoPortal_Gene_1770 141 CDLKNTngyFTIDYEEVEKKIVE-----NNVKLFIQCSPHNP-AGRVWKEEELSKILEICKKHNVLVISD 204 44333332335667899999999.....58999988888995.9*********************99988 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (399 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1016 (0.0607946); expected 334.2 (0.02) Passed bias filter: 546 (0.0326711); expected 334.2 (0.02) Passed Vit filter: 48 (0.00287219); expected 16.7 (0.001) Passed Fwd filter: 4 (0.000239349); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.28u 0.24s 00:00:00.52 Elapsed: 00:00:00.32 # Mc/sec: 3624.71 // [ok]