# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1771.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1771 [L=441] Description: # 1892463 # 1893785 # 1 # ID=1_1771;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.304 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-32 112.9 40.3 4e-19 68.9 15.8 2.2 2 Na_H_antiporter Na+/H+ antiporter family 1.4e-05 24.4 48.2 0.0011 18.1 18.6 2.7 2 CitMHS Citrate transporter 4.6e-05 23.4 5.3 4.6e-05 23.4 5.3 3.5 4 MatC_N Dicarboxylate carrier protein MatC N-terminu Domain annotation for each model (and alignments): >> Na_H_antiporter Na+/H+ antiporter family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 68.9 15.8 7.2e-23 4e-19 99 302 .. 25 222 .. 3 223 .. 0.84 2 ! 50.0 16.5 3.9e-17 2.2e-13 113 300 .. 244 431 .. 228 433 .. 0.90 Alignments for each domain: == domain 1 score: 68.9 bits; conditional E-value: 7.2e-23 Na_H_antiporter 99 ytgalalvaivkafivalafqntdvatalvvgalaglivatllelaslseidkllnrGiksmlgaililllAwgiggvlealg 181 y+g++ + + +af+++ al+ g+ ++l++ +l+l++ +i + n+G +++ ++li llA g+ g+++a+g 23726_FusoPortal_Gene_1771 25 YIGSGI---FFTLIGAEGAFKKFPRHVALLAGIIVALLMNRGLKLEKKIDIF-SENAGNPGVILIGLIYLLAGGFQGAAKAMG 103 333333...4445666677888877777777777777777777775322232.2378899*********************** PP Na_H_antiporter 182 vteslvsslakgvvskgllplilflvallvafatGtswgtigIilpiavplaaklgisllalvraveaggtlgdhlsPisdtt 264 ++es v+ ++++ +l+ +fl++++++ a+Gts gt++ ++pia+ +a + +++ + +++av g+ +gd ls isdtt 23726_FusoPortal_Gene_1771 104 GVESVVNLGLTFIP-SIFLVPGVFLISCFISTAIGTSMGTVAAMAPIAIGVAQAANLNVPLTAAAVIGGAYFGDNLSMISDTT 185 ****9998888775.56777789************************************************************ PP Na_H_antiporter 265 ilsstglnadhidhvsytqlpyallvapitailllvfG 302 i + g +++ d ++ + +al +a+++ai+++++G 23726_FusoPortal_Gene_1771 186 ISAAKGVGSEMKDKFK-MNFFIALPAAIFAAIMYGIMG 222 ****************.*******************98 PP == domain 2 score: 50.0 bits; conditional E-value: 3.9e-17 Na_H_antiporter 113 ivalafqntdvatalvvgalaglivatllelaslseidkllnrGiksmlgaililllAwgiggvlealgvteslvsslakgvv 195 ++++a+ +++v+ lv+g+ ++ +l + + + ++ + + +G+ m+ + ++ +l g+ g+++ g++e lv+s+ ++++ 23726_FusoPortal_Gene_1771 244 VLITALIGFNVSGVLVLGIAMTGVIGLLEGNITFLDWIGAIGEGMSDMFSITIVAILISGLIGLVKYYGGIEWLVNSIISKIK 326 445556777888888876655555555555559999*********************************************** PP Na_H_antiporter 196 skgllplilflvallvafatGtswgtigIilpiavplaaklgisllalvraveaggtlgdhlsPisdttilsstglnadhidh 278 s++ + + l+++l ++a +++++i+I++pia++++ k++i +++l++++ + +l P +++++++ ++ ++ 23726_FusoPortal_Gene_1771 327 SRKNAEYGISLISGLLSAALVNNTIAIIITAPIAKEIGQKYNIVPKRLASLIDIFACAFIALTPYDGGMLMITALVDVSPLEV 409 ****************************************************************************9999999 PP Na_H_antiporter 279 vsytqlpyallvapitailllv 300 ++y+ + +al+v ++++i +++ 23726_FusoPortal_Gene_1771 410 LKYSFYIFALIVTTCITIQFGL 431 **99999999999999998876 PP >> CitMHS Citrate transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.3 34.4 0.014 76 13 242 .. 51 285 .. 34 302 .. 0.58 2 ! 18.1 18.6 2e-07 0.0011 16 136 .. 258 394 .. 241 435 .. 0.58 Alignments for each domain: == domain 1 score: 2.3 bits; conditional E-value: 0.014 xxxxxxxxxx..xxxxxx....xxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF CitMHS 13 vvallvlvll..vltiee....alsgiaspiillllgamiigaale....etGlfdrlaakllrlaggkrdllvllvlltall 85 ++ ++v++l+ l++e+ + ++p ++l+++ +++++ + G+++++++ l + + +lv +++l+ 23726_FusoPortal_Gene_1771 51 LAGIIVALLMnrGLKLEKkidiFSENAGNPGVILIGLIYLLAGGFQgaakAMGGVESVVNLGLTFIPS--I---FLVPGVFLI 128 45566666779966666655545566677777666666666665541111678888888888888887..4...455555555 PP xxxxxx.xxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxx RF CitMHS 86 safvsn.dgv....vlimipivlslakrlkklppllliplalaaniggaltpiGtpttraa.......arpglslpnllllal 156 s+f+s+ g+ v+ m+pi++ +a+ + ++pl + +++ +a g l++i + t+ aa ++ ++ ++++l+a+ 23726_FusoPortal_Gene_1771 129 SCFISTaIGTsmgtVAAMAPIAIGVAQAANLNVPLTAAAVIGGAYFGDNLSMISDTTISAAkgvgsemKDKFKMNFFIALPAA 211 55555544445666*************9888889999999999*****9*******99999*****99666666666666666 PP xxxxx......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF CitMHS 157 llvgl......................lplvllfmfgvalalpvnapkvkkqkaiieaiarsllpvatilllaykkveW.svl 216 +++++ l p +++l++a+ + +vl 23726_FusoPortal_Gene_1771 212 IFAAImygimggngsitgeynyhiirvL------------------------------------PYIVVLITALIGFNVsGVL 258 6665523333333333333333333331....................................3333332221111110122 PP xxxxxxxxxxxxxxxxx.xxxxxxxxx RF CitMHS 217 llfaGvfllvgaleqtG.ilealadll 242 +l ++++++ g le+ l++++++ 23726_FusoPortal_Gene_1771 259 VLGIAMTGVIGLLEGNItFLDWIGAIG 285 344444444444443223333333333 PP == domain 2 score: 18.1 bits; conditional E-value: 2e-07 xxxxxxx..xxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF CitMHS 16 llvlvll..vltiee...............alsgiaspiillllgamiigaaleetGlfdrlaakllrlaggkrdllvllvll 81 l++++++ v+++ e + ++++i+++l+ + ++++++ G++++l++ ++++ +++++ ++l+ 23726_FusoPortal_Gene_1771 258 LVLGIAMtgVIGLLEgnitfldwigaigegMSDMFSITIVAILISG--LIGLVKYYGGIEWLVNSIISKIKSRKNAEYGISLI 338 2222222453333333333333333322333444444444444443..67999******************86668888**** PP xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF CitMHS 82 tallsafvsn.dgvvlimipivlslakrlkklppllliplalaaniggaltpiGtp 136 ++llsa + n + +++i++pi+ +++++ + p +l+ ++ ++a + altp + 23726_FusoPortal_Gene_1771 339 SGLLSAALVNnTIAIIITAPIAKEIGQKYNIVPKRLASLIDIFACAFIALTPYDGG 394 *****998885777**************8777777666666666555668887666 PP >> MatC_N Dicarboxylate carrier protein MatC N-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.1 9.8 0.00086 4.8 70 147 .. 99 174 .. 48 176 .. 0.71 2 ? -1.4 1.2 0.36 2e+03 64 104 .. 215 257 .. 184 271 .. 0.53 3 ! 23.4 5.3 8.2e-09 4.6e-05 53 139 .. 288 376 .. 231 384 .. 0.71 4 ? -2.8 0.2 0.97 5.4e+03 38 60 .. 399 420 .. 393 434 .. 0.47 Alignments for each domain: == domain 1 score: 7.1 bits; conditional E-value: 0.00086 MatC_N 70 arvnGtidlLvkvavravrgrvaaipwvlfllaalltalGalspaavaivaPvalsfakkyridPllagllvvhGaqa 147 a++ G ++ +v+ + + + ++p v fl++ +++ +s+ +va +aP+a+ +a+ + + l++ +v+ Ga 23726_FusoPortal_Gene_1771 99 AKAMGGVESVVNLGLTFIP-SIFLVPGV-FLISCFISTAIGTSMGTVAAMAPIAIGVAQAANLNVPLTAAAVIGGAYF 174 5555555555555554443.34455555.67777665555568899****************9988889999999965 PP == domain 2 score: -1.4 bits; conditional E-value: 0.36 MatC_N 64 tylfaiarvnGtidlLvkvavravrgrvaaip..wvlfllaal 104 + +++i nG i + + +v +++++ ++ f ++++ 23726_FusoPortal_Gene_1771 215 AIMYGIMGGNGSITGEYNYHIIRVLPYIVVLItaLIGFNVSGV 257 3467777777776655544444444444433201233455544 PP == domain 3 score: 23.4 bits; conditional E-value: 8.2e-09 MatC_N 53 Padlf.ltlva..vtylfaiarvnGtidlLvkvavravrgrvaaipwvlfllaalltalGalspaavaivaPvalsfakkyri 132 +d+f +t+va ++ l ++ + G i++Lv+ ++ ++++r +a + + l+++ll+a a+ i aP+a ++ +ky+i 23726_FusoPortal_Gene_1771 288 MSDMFsITIVAilISGLIGLVKYYGGIEWLVNSIISKIKSRKNAEYGI-SLISGLLSAALVNNTIAIIITAPIAKEIGQKYNI 369 46777567777225789***************************8876.689******99999999999************** PP MatC_N 133 dPllagl 139 P + 23726_FusoPortal_Gene_1771 370 VPKRLAS 376 9976555 PP == domain 4 score: -2.8 bits; conditional E-value: 0.97 MatC_N 38 tvllgldpkevlagfPadlfltl 60 t l++++p evl++ +f + 23726_FusoPortal_Gene_1771 399 TALVDVSPLEVLKY-SFYIFALI 420 55566666666642.22222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (441 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 739 (0.0442197); expected 334.2 (0.02) Passed bias filter: 260 (0.0155577); expected 334.2 (0.02) Passed Vit filter: 26 (0.00155577); expected 16.7 (0.001) Passed Fwd filter: 5 (0.000299186); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.34 # Mc/sec: 3770.59 // [ok]