# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1790.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1790 [L=403] Description: # 1917152 # 1918360 # -1 # ID=1_1790;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.293 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-113 379.0 46.6 2.7e-113 378.8 46.6 1.0 1 SDF Sodium:dicarboxylate symporter family Domain annotation for each model (and alignments): >> SDF Sodium:dicarboxylate symporter family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 378.8 46.6 1.6e-117 2.7e-113 1 389 [. 6 390 .. 6 391 .. 0.98 Alignments for each domain: == domain 1 score: 378.8 bits; conditional E-value: 1.6e-117 SDF 1 LllqiliglvlGlviGllelvkelaalisplgdlfinllkmlivPlvfasiisgiaslgdakklgklglktllyfllttliAa 83 L+ qi+i+++lG+++G+ ++++++ +++lgd+f++llkmli+Plv++++isg++++gd+k+l+++g+++++++l++++++a 23726_FusoPortal_Gene_1790 6 LWKQIIIAILLGILVGV--FMPNIVPKFKFLGDIFLRLLKMLIAPLVLFTLISGVCKMGDIKQLRTVGMRIVIFYLASSTVSA 86 799**************..**************************************************************** PP SDF 84 iiglilalllkpgselaleassakeaekketdslldlilslipsnifealaegnvlavivfailfGialaalgekgepllkff 166 i+g+++al+ +pg + ++ e k + ++ + +++++p nifeala gn+l++i+fa+l+G++l +lg++ ++++k++ 23726_FusoPortal_Gene_1790 87 ILGVLIALFTQPG--KGVIDLLGTEVGKDVSYNFIENLIGWVPINIFEALATGNTLQIIFFALLMGVVLLSLGDSVSVVIKIV 167 *************..556677777777778999************************************************** PP SDF 167 eslnevvmkvvkivmklaPigvfaliaslvaskglgalsslakflltvylglaihllivlpllllvltkknplkflkkilpal 249 +++++++mk+++ivmk+aPig+falia l++s ++l+++++++ltvy++l+++++iv+p++++++tk + lkflk++ pa+ 23726_FusoPortal_Gene_1790 168 DQAADAMMKLTEIVMKFAPIGIFALIADLTISLSGNMLKQVLNMILTVYIVLLFIIFIVYPIAIKLFTKESGLKFLKNVTPAM 250 *********************************************************************************** PP SDF 250 ltAfsTaSSaAtLPvtlecaeknlgvsesiasfvlPlGatinmdGtalyeavaaifiaqlfgvelslgqllllvlvatlasiG 332 ++A sT+SSaAtLPv+l+ca+++lgv+e+i +f+lPlG t+nm+G a+ ++v+ +f+++++g ++++ +ll++v++ ++ s+G 23726_FusoPortal_Gene_1790 251 IVAASTTSSAATLPVSLRCANEELGVPENIFGFTLPLGNTCNMNGLAVGLGVISVFASNIYGYPITFVSLLQFVFMGLVLSVG 333 *********************************************************************************** PP SDF 333 aagvPgaglvalllvlsalglpvegialilaidrllDmfrTavNvtGdavaalivak 389 agv gag+v+ +++l+++g+p++ i++++ai ++ D + T+ N+tGd+v++++va+ 23726_FusoPortal_Gene_1790 334 CAGVKGAGIVMSTVLLQTFGMPLTLIPILAAIWPITDIGYTTANITGDLVGTVVVAN 390 *******************************************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (403 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1154 (0.0690522); expected 334.2 (0.02) Passed bias filter: 407 (0.0243538); expected 334.2 (0.02) Passed Vit filter: 41 (0.00245333); expected 16.7 (0.001) Passed Fwd filter: 3 (0.000179512); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.29u 0.23s 00:00:00.52 Elapsed: 00:00:00.32 # Mc/sec: 3661.04 // [ok]