# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1800.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1800 [L=278] Description: # 1926745 # 1927578 # -1 # ID=1_1800;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.264 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-91 305.4 0.0 3.7e-91 305.3 0.0 1.0 1 LpxC UDP-3-O-acyl N-acetylglycosamine deacetylase Domain annotation for each model (and alignments): >> LpxC UDP-3-O-acyl N-acetylglycosamine deacetylase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 305.3 0.0 2.2e-95 3.7e-91 2 268 .. 4 273 .. 3 275 .. 0.98 Alignments for each domain: == domain 1 score: 305.3 bits; conditional E-value: 2.2e-95 EEESS-EEEEEE-TTT-SEEEEEEEE--TT-EEEEEETTSS..ETEEESSGGGEEEESSSEEEE.ETTEEEB--HHHHHHHHH CS LpxC 2 rTlkksvslsGvGLhsGekvevtlkPaeantGivfrrtdlp..ekeipasienvsdtklsttlg.kkgvkvstvEHllaAlaa 81 +Tlk+ v+++G+GLh+Ge ++++l Pa+++ Gi+fr++++p ++ei +++n d ++ t+l+ ++g+ v t+EH+l+Al++ 23726_FusoPortal_Gene_1800 4 KTLKNIVEYDGIGLHKGEIIKMKLIPAKSG-GIIFRMVNMPegKNEILLDYRNTFDLTRGTNLKnEHGAMVFTIEHFLSALYV 85 8****************************8.**********998899*****************9889*************** PP TT--SEEEEESSSB---TTSSSHHHHHHHHHHTEEEEEEE--EEEE-S-EEEEETTEEEEEEE-S.SEEEEEEEEESSTTCCC CS LpxC 82 lgidnalievdgeEvPilDGSaaefveaieeagikeqeaekkvlrvkkpveveegdkfvallPsd.elklsveidfehpaige 163 lgi++++ie++g+E+Pi+DGSa +f+++++e gi+e ++ + + vk+p+ +++gdk v +lP+ ++kl+++i+feh+ +++ 23726_FusoPortal_Gene_1800 86 LGITDLVIELNGNELPICDGSAIKFLDLFQESGIVELDEYVEEIIVKEPIFLSKGDKHVIALPYPdGYKLTYAIRFEHTFLKS 168 ****************************************************************857**************** PP CEEEEETTCCHHHHHTTT--EEEEHHHHHHHHHTTSSTT-STTTSEEEESSSBSSTT--SSTTHHHHHHHHHHHHHHGGGSSE CS LpxC 164 qslslelseesfakeiapARTFgflkevealrkaglakGgsldnavvideekvlneeglrfedEfvrHKiLDliGDLallgap 246 q +++e++ee+++keia+ARTFgf eve+l++++la+Gg+l+na+vi++++vln++glrf+dEfvrHK+LD+iGDL +l++p 23726_FusoPortal_Gene_1800 169 QLAEFEITEENYRKEIASARTFGFDYEVEYLKQNNLALGGTLENAIVIKKDGVLNPDGLRFDDEFVRHKMLDIIGDLKILNRP 251 *********************************************************************************** PP EEEEEEEES--HHHHHHHHHHH CS LpxC 247 llghvvaykagHalnnkllral 268 +++h++a+kagH +++++++ l 23726_FusoPortal_Gene_1800 252 IRAHIIAIKAGHLIDIEFAKIL 273 ******************9987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (278 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 266 (0.0159167); expected 334.2 (0.02) Passed bias filter: 235 (0.0140618); expected 334.2 (0.02) Passed Vit filter: 20 (0.00119674); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.25u 0.23s 00:00:00.48 Elapsed: 00:00:00.33 # Mc/sec: 2448.95 // [ok]