# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1860.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1860 [L=347] Description: # 1988276 # 1989316 # 1 # ID=1_1860;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.283 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.5e-84 282.2 25.9 4.3e-84 281.9 25.9 1.1 1 Cons_hypoth698 Conserved hypothetical protein 698 0.00069 18.9 34.0 0.0018 17.6 12.8 3.3 5 KdgT 2-keto-3-deoxygluconate permease 0.0029 17.9 2.7 0.0029 17.9 2.7 4.7 4 DUF4199 Protein of unknown function (DUF4199) Domain annotation for each model (and alignments): >> Cons_hypoth698 Conserved hypothetical protein 698 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 281.9 25.9 7.6e-88 4.3e-84 2 303 .. 7 324 .. 6 325 .. 0.98 Alignments for each domain: == domain 1 score: 281.9 bits; conditional E-value: 7.6e-88 Cons_hypoth698 2 GLllllliavlalllakvellfaklsalllAillGillgnflklqeqlkaGvafskkklLrlgivllGfrltlsdiakvGlkg 84 G++l++l+a+ a+ l+k +f+ ++ +++ i++Gi+++ +lk ++++++G++f++kk+L+++++llGf l+l++i++vG+ + 23726_FusoPortal_Gene_1860 7 GIILCFLLALPAWKLGK---FFPLVGGPVFGIIIGIVIAILLKNRAKFDSGINFASKKVLQYAVILLGFGLNLQTIISVGS-S 85 99***************...89***********************************************************.9 PP Cons_hypoth698 85 vlldiivlistfllvlllgakllkldkklalLvaaGssiCGasAilavepvikareeevalaiavivllgtvamllyPalatl 167 +l++i+++ist l+++++ akl+++++k+a+L+++GssiCG+sAi+a++pvi+a+++e+a+ai+vi+l++++a+l++P+l+ + 23726_FusoPortal_Gene_1860 86 SLPIILSTISTSLIIAYILAKLINIPTKIATLIGVGSSICGGSAIAATAPVIDAHDDEIAQAISVIFLFNVIAALIFPTLGDI 168 9********************************************************************************** PP Cons_hypoth698 168 lsltdeefgvfaGasvhevaqVvaagelvseeaak......iAvivKltRvlllapvvlllslllakreeesetkeakitiPw 244 l+++++ f++faG++v+++++V+a+++++++++++ A+ivKltR+l+++p++l+l+++ +k+++++++ + k+ +P+ 23726_FusoPortal_Gene_1860 169 LNFSNKGFALFAGTAVNDTSSVTATASAWDSMHNTgtqvldSATIVKLTRTLAIIPITLFLAVYNSKKNSNANNFSLKKIFPM 251 ********************************999999999****************************99999999****** PP Cons_hypoth698 245 FvlgFlvvallntlvllp..............selvsalktlstlllvmalaAlglktdlkalkkaglkplll 303 F+++F+++++++t+ ++++s +k+ls+++++ma++A+gl+t++k+l+ +g+kpl l 23726_FusoPortal_Gene_1860 252 FIVYFILASIITTVCNYFievgvitenisitiNNVFSFFKHLSKFFIIMAMVAIGLNTNIKKLILSGAKPLTL 324 *************988777899*************************************************98 PP >> KdgT 2-keto-3-deoxygluconate permease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.6 12.8 3.2e-07 0.0018 170 300 .. 34 167 .. 13 174 .. 0.80 2 ? -2.0 1.4 0.29 1.6e+03 252 290 .. 176 214 .. 151 230 .. 0.72 3 ? 0.7 1.2 0.043 2.4e+02 49 95 .. 225 271 .. 204 276 .. 0.66 4 ? 1.9 0.7 0.019 1e+02 12 40 .. 251 279 .. 242 287 .. 0.86 5 ! 12.4 4.4 1.2e-05 0.067 173 241 .. 272 343 .. 269 345 .. 0.85 Alignments for each domain: == domain 1 score: 17.6 bits; conditional E-value: 3.2e-07 KdgT 170 PllvGmilGnldeelrkf...lkkgvkilipflafalGaginlktilkaglsGilLgvivvvvtgillylvdrlllkkk...g 246 +++G++++ l ++ kf ++ ++k ++ + lG g+nl+ti+++g s + +++ ++ + i++y++ +l++ + + 23726_FusoPortal_Gene_1860 34 GIIIGIVIAILLKNRAKFdsgINFASKKVLQYAVILLGFGLNLQTIISVGSSSLPIILSTISTSLIIAYILAKLINIPTkiaT 116 467777777776655544111666778889999999*************************************9987664568 PP KdgT 247 vagaAasstAgnavatPaavaaadpsfapvvasAtaqvAaavivtailvPllta 300 +g+++s + g a+a a v a+ + +a+A + + ++ a++ P l + 23726_FusoPortal_Gene_1860 117 LIGVGSSICGGSAIAATAPVIDAH---DDEIAQAISVIFLFNVIAALIFPTLGD 167 89***********98776665544...456778888899999999999998865 PP == domain 2 score: -2.0 bits; conditional E-value: 0.29 KdgT 252 asstAgnavatPaavaaadpsfapvvasAtaqvAaaviv 290 + Ag+av + v a ++++ ++ ++ t + a+iv 23726_FusoPortal_Gene_1860 176 FALFAGTAVNDTSSVTATASAWDSMHNTGTQVLDSATIV 214 455788888888888888888888888888877777776 PP == domain 3 score: 0.7 bits; conditional E-value: 0.043 KdgT 49 lglfllcvGaqiklkaagkvlkkggvlllvklliavllgllvakllg 95 + lfl + ++ + +a + lkk + +++v +++a ++++++ +++ 23726_FusoPortal_Gene_1860 225 ITLFLAVYNSKKNSNANNFSLKKIFPMFIVYFILASIITTVCNYFIE 271 45555555666666666677777777777777777777777766654 PP == domain 4 score: 1.9 bits; conditional E-value: 0.019 KdgT 12 lmlvPLligalintfaPevleiGsfttal 40 + +v +++++i+t++ ++e+G t+++ 23726_FusoPortal_Gene_1860 251 MFIVYFILASIITTVCNYFIEVGVITENI 279 7899999**************99999876 PP == domain 5 score: 12.4 bits; conditional E-value: 1.2e-05 KdgT 173 vGmilGnldeelrk...flkkgvkilipflafalGaginlktilkaglsGilLgvivvvvtgillylvdrll 241 vG+i n+ ++ + f+k+ +k++i++ + a+G ++n+k+++ +g++ + Lg ++++ ++ + ++++l 23726_FusoPortal_Gene_1860 272 VGVITENISITINNvfsFFKHLSKFFIIMAMVAIGLNTNIKKLILSGAKPLTLGFCCWFAISLVSIGLQKIL 343 78888888876664222789999************************************9999988888776 PP >> DUF4199 Protein of unknown function (DUF4199) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 4.3 1.4 0.0081 45 149 168 .] 28 47 .. 20 47 .. 0.88 2 ? -3.5 8.3 2 1.1e+04 45 87 .. 123 165 .. 62 217 .. 0.60 3 ! 17.9 2.7 5.2e-07 0.0029 41 91 .. 220 270 .. 192 284 .. 0.81 4 ? -1.0 2.3 0.33 1.9e+03 34 86 .. 288 338 .. 272 343 .. 0.56 Alignments for each domain: == domain 1 score: 4.3 bits; conditional E-value: 0.0081 DUF4199 149 lgnliiGlilsliiAlilkk 168 +g ++G+i++++iA++lk+ 23726_FusoPortal_Gene_1860 28 VGGPVFGIIIGIVIAILLKN 47 67789************996 PP == domain 2 score: -3.5 bits; conditional E-value: 2 DUF4199 45 pflvylalkkyrkknlgGfisfgqafgfgflislvagllsavf 87 +++ a+ + + + + qa+++ fl ++a+l++ + 23726_FusoPortal_Gene_1860 123 SICGGSAIAATAPVIDAHDDEIAQAISVIFLFNVIAALIFPTL 165 3334444444433332223357888888888888888888765 PP == domain 3 score: 17.9 bits; conditional E-value: 5.2e-07 DUF4199 41 lllvpflvylalkkyrkknlgGfisfgqafgfgflislvagllsavfqyiy 91 l+++p++++la+ + +k+ + +++s ++ f + ++++++a+++++v +y++ 23726_FusoPortal_Gene_1860 220 LAIIPITLFLAVYNSKKNSNANNFSLKKIFPMFIVYFILASIITTVCNYFI 270 44558889999996666665889*************************975 PP == domain 4 score: -1.0 bits; conditional E-value: 0.33 DUF4199 34 glla.llllllvpflvylalk.kyrkknlgGfisfgqafgfgflislvagllsav 86 +++ l ++++++++v ++l + +k + +s + +++gf + ++l+s+ 23726_FusoPortal_Gene_1860 288 SFFKhLSKFFIIMAMVAIGLNtNIKKLI----LSGAKPLTLGFCCWFAISLVSIG 338 2333344444545566777775555555....44466666666666666666665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (347 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 903 (0.054033); expected 334.2 (0.02) Passed bias filter: 253 (0.0151388); expected 334.2 (0.02) Passed Vit filter: 19 (0.00113691); expected 16.7 (0.001) Passed Fwd filter: 3 (0.000179512); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.33u 0.28s 00:00:00.61 Elapsed: 00:00:00.39 # Mc/sec: 2586.51 // [ok]