# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1869.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1869 [L=922] Description: # 2000753 # 2003518 # 1 # ID=1_1869;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.219 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.9e-20 72.3 27.3 6.9e-20 72.3 27.3 7.3 5 AAA_23 AAA domain 7.2e-10 38.9 67.5 7.2e-10 38.9 67.5 3.5 3 AAA_15 AAA ATPase domain 2.2e-08 33.7 0.9 2.2e-08 33.7 0.9 3.5 2 SMC_N RecF/RecN/SMC N terminal domain 9.9e-07 28.3 0.0 2.5e-06 27.0 0.0 1.7 1 AAA_29 P-loop containing region of AAA domain 4.8e-06 26.2 0.1 4.8e-06 26.2 0.1 4.1 5 AAA_27 AAA domain 0.0034 17.2 5.8 0.0034 17.2 5.8 5.1 3 AAA_21 AAA domain, putative AbiEii toxin, Type IV TA sys ------ inclusion threshold ------ 0.012 15.6 8.5 0.012 15.6 8.5 8.3 8 TPR_MLP1_2 TPR/MLP1/MLP2-like protein 0.023 14.8 0.0 0.058 13.5 0.0 1.7 1 SbcCD_C Putative exonuclease SbcCD, C subunit 2.7 8.2 6.1 47 4.2 0.0 5.2 6 WXG100 Proteins of 100 residues with WXG Domain annotation for each model (and alignments): >> AAA_23 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.3 27.3 3.7e-23 6.9e-20 1 194 [. 5 220 .. 5 226 .. 0.70 2 ? -56.3 87.1 9 1.7e+04 56 175 .. 237 394 .. 208 514 .. 0.47 3 ? -9.4 44.9 9 1.7e+04 43 199 .. 473 657 .. 469 662 .. 0.58 4 ? -7.3 35.6 9 1.7e+04 79 198 .. 637 761 .. 632 786 .. 0.71 5 ? -0.3 1.3 0.67 1.2e+03 73 112 .. 803 841 .. 769 917 .. 0.56 Alignments for each domain: == domain 1 score: 72.3 bits; conditional E-value: 3.7e-23 AAA_23 1 kLkienfrsfrdqeidFskgltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiesegkvkayveltfenkd 83 k+++en+rs+++ +++F kg++lI G+NG GKT+il+Ai ++++ + r ++ ks++++ + ++++ v+++f +d 23726_FusoPortal_Gene_1869 5 KVQLENYRSHSNITVEFTKGVNLILGKNGRGKTSILEAISTVMFNTKDRSGK----ETGKSYIKF--G-EKSSKVDINFIAND 80 689******************************************7655544....444666665..3.67888********* PP AAA_23 84 grytrsiererekskkkgktt............kkaklelleideleqfisellgskki..ilnlilflgqerfekfel.... 148 gr+ ++++ e++k+k k++t +++ +el++i++ +++ e++ + k+ +n+++ ++++r+e f++ 23726_FusoPortal_Gene_1869 81 GRE-YNLKTEFFKTKPKKQTLkdmigseydgdiQEKLEELCGIKKGFEETYENIVIAKQneFINIFKAKPKDREEIFNKifnt 162 *97.***********99999944444444444444455555554444444444442222224477777777776555555555 PP AAA_23 149 ........kdkkerleelekeleeledekkllekl....eqekekekeleeleeelee 194 + ke++++++++ ++l +e+ +l+++ eq+ + ke e ++++l++ 23726_FusoPortal_Gene_1869 163 qiykemydSFLKEAVDKYKEKVKDLDKEITFLKENmedkEQITNFLKEEEIIKNTLNK 220 5555555533334777777777666666666666655548888888899999998886 PP == domain 2 score: -56.3 bits; conditional E-value: 9 AAA_23 56 rgfeksdveiese........gkvkayveltfenkdgrytrsier.erekskkkgkttkkaklelleideleqfisellgskk 129 +++e+ ++e+++ +k k+y++l en+ + + +ksk k+t k+ le l+i+++ + ++e+l++ 23726_FusoPortal_Gene_1869 237 KDYETTEIELNNLiknikdeeNKIKKYLSLLKENIVE-------AkQAKKSKIIVKETEKSYLEYLNIEKRLKDLRENLDNLL 312 2333333332222222222233333333333332222.......235555555556666666666666333333333333222 PP AAA_23 130 i.ilnlilflgqer.................fekfelkdkke..................rleelekeleeledekkllekl 175 + + + +++ + ++ ++++kke +l+++++ l++le+ +++ +k+ 23726_FusoPortal_Gene_1869 313 DeQKLNTQYQNNIEklelsnknlkvdisnleENISKNSEKKEnleseiselkikeenldlKLKKYINLLDKLEKLENFKDKK 394 2122222222222211222233333333332111111222222333333333333333333333333333333333333333 PP == domain 3 score: -9.4 bits; conditional E-value: 9 AAA_23 43 Lygetprlsrksgrgfeksdveiese........gkvkay...veltfenkdgrytrsiererekskkkgkttkka.....kl 109 L ++ ++l++k+ +++++s+++i++e + k++ +++fe+ +++y +e eks k+ + +k+ k+ 23726_FusoPortal_Gene_1869 473 LNEKCQNLEDKEAEDYFSSKISIKTEelenlkksIEEKTQilvEKVVFEDRKKQY-----FELEKSIKDLELSSKNeeinlKE 550 55667778888888889999998888888888783444443547777***99976.....34444444444444442221133 PP AAA_23 110 elleideleqfisellgskkiilnlilflgqerfekfel...kdkkerleelekeleeledekkllekl...........eqe 178 +l++++l+ i++l+++ ++++++++l ++++e + + + e+ e+l++ le le ek+++ k+ 23726_FusoPortal_Gene_1869 551 IELDVKNLDMDINKLIEN--QEFQNSQMLREKKKELEVElrnLNLDEKRENLKNLLENLEIEKEKILKNqnsiesnlkkiD-- 629 344558888899988765..5677777777777333333233344445555666655555544443333344443343330.. PP AAA_23 179 kekek...........eleeleeeleeilkel 199 + ++e +++e+++ +++l 23726_FusoPortal_Gene_1869 630 ----EfskkikvdtnkNIESIKSEIKTFENKL 657 ....2334555555568888888888877776 PP == domain 4 score: -7.3 bits; conditional E-value: 9 AAA_23 79 fenkdgrytrsiererekskkkgkttkkaklelleideleqfise.llgskkiilnlilflgqerfekfel...kdkke..rl 155 + ++++ +si+ e+++ ++k + k+ e ++ + l + +++ ll+++k+i +l+++ +++ k++ ++k + ++ 23726_FusoPortal_Gene_1869 637 VDTNKN--IESIKSEIKTFENKLDDLKNPYNEYIKNNVLAEDLENlLLKVDKNIKELYSLRTDKNLLKEKVsilEEKIKniKI 717 333444..357777888888888888888999999999999999966668888999999999988544444444222225799 PP AAA_23 156 eelekeleeledekkllekle.qekekekeleeleeeleeilke 198 +el+++++ +++e ++++k++ +ek ++++++ e++ +++++ 23726_FusoPortal_Gene_1869 718 DELKEKYDIIKEELNEINKKLgSSQEKIDNYKKILEKISSQEEK 761 999******99999999999444555555555555555555544 PP == domain 5 score: -0.3 bits; conditional E-value: 0.67 AAA_23 73 ayveltfenkdgrytrsiererekskkkgkttkkaklell 112 ++++++f++++gr t++ie++ e+++k +++ ++++++ 23726_FusoPortal_Gene_1869 803 NIASVNFNKITGR-TERIEWSNEEKDKYAVYLVGQERKIA 841 4556667777776.47777766666665555544443332 PP >> AAA_15 AAA ATPase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.9 67.5 3.9e-13 7.2e-10 1 300 [. 1 329 [. 1 341 [. 0.56 2 ? -14.7 52.5 9 1.7e+04 90 277 .. 327 516 .. 314 532 .. 0.52 3 ! 16.2 70.3 3.2e-06 0.0059 50 383 .. 524 910 .. 518 911 .. 0.81 Alignments for each domain: == domain 1 score: 38.9 bits; conditional E-value: 3.9e-13 AAA_15 1 MkIkkikikNFRslkdteidldeeltvliGkNnsGKSsileald.lflnnk.ekkn......enkvikiekedlekfenises 75 M+Ikk++++N+Rs++++++++ + ++++ GkN+ GK+silea+ +++n+k + + ++ + ++++++++ + 23726_FusoPortal_Gene_1869 1 MIIKKVQLENYRSHSNITVEFTKGVNLILGKNGRGKTSILEAIStVMFNTKdR--SgketgkSYIKFGEKSSKVDINFIANDG 81 *******************************************6378998842..1357777444444455555555555566 PP AAA_15 76 keikIdvef......................liefeyledkkkilklkskkkskeyestlkskgkkkadlllkkkekdlkkli 136 +e +++ ef + + e+l+ +kk +++++ye + k +++ +++k k kd +++ 23726_FusoPortal_Gene_1869 82 REYNLKTEFfktkpkkqtlkdmigseydgdiQEKLEELCGIKK-------GFEETYENIVIAK-QNEFINIFKAKPKDREEIF 156 6666666666666688888885555555555223333333333.......3333333333322.2223334444444444333 PP AAA_15 137 .kdkklklkkneysdekisvekkke..................kkelekkkeeklekekaeikidkedlkklikkleeslnke 200 k ++++++k+ y++ +++ +k + ke +++ +++e k+++++d+++++++i+kl++ ++ + 23726_FusoPortal_Gene_1869 157 nKIFNTQIYKEMYDSFLKEAVDKYKekvkdldkeitflkenmeDKEQITNFLKEEEIIKNTLNKDFSKTTETINKLSNEIKDY 239 12344444444444444444444444433333333344443334444444445555556666667777777777777777777 PP AAA_15 201 elknvlksaiiklllisadRnvsdedsekkssllgkllekileealqekl......eeeleeklkkieeklkeidkelaeelk 277 e ++++l++ +n++de+ +k++++l+ l+e+i e++ ++k +e++ + +ie+ lk++ 23726_FusoPortal_Gene_1869 240 E--------TTEIELNNLIKNIKDEE-NKIKKYLSLLKENIVEAKQAKKSkiivkeTEKSYLEYLNIEKRLKDLR-------- 305 7........78888888888888876.566999999******986544444444442222223333333333333........ PP AAA_15 278 kilekkidkik.kfgykgkkneei 300 + l++ +d+ k +++y+++ + + 23726_FusoPortal_Gene_1869 306 ENLDNLLDEQKlNTQYQNNIEKLE 329 555555555555555555555443 PP == domain 2 score: -14.7 bits; conditional E-value: 9 AAA_15 90 yledkkkilklksk.kkskeyestlkskgkkkadlllkkkekdlkklikdkklklkkneysdekisvekkkekkelekkkeek 171 +le k+lk + ++ +e++s + +k+++ + + + k+k+ + +k kk+ ++ ++ + + ++kk++ +l+k++e + 23726_FusoPortal_Gene_1869 327 KLELSNKNLKV--DiSNLEENISKNSEKKENLESEISELKIKEENLDLKLKKY-INLLDKLEKLENFKDKKSEDKLKKMTEID 406 22222222221..1223333333333222222222222222222222222222.22223333333333333333333333332 PP AAA_15 172 lekekaeikidkedlkklikkleeslnkee........lknvlksaiiklllisadRnvsdedsekkssllgkllekileeal 246 k+ + k+dl+k+i+ + ++ + lk + +++ii i+ +++s+e s+k+ ++l+++ +++ + ++ 23726_FusoPortal_Gene_1869 407 FL--KK-ELVSKNDLFKIIDIEKLGKKL-SdfqelekeLKLLEEQKIIFETEIKTLKKSSKELSDKICPFLNEKCQNLEDKEA 485 22..11.123456666666622222222.1466666566777789999999******************************99 PP AAA_15 247 qekl...eeeleeklkkieeklkeidkelaeelk 277 ++++ + ++e+l++++++++e++++l + 23726_FusoPortal_Gene_1869 486 EDYFsskISIKTEELENLKKSIEEKTQIL---VE 516 99998887778888889999998888887...22 PP == domain 3 score: 16.2 bits; conditional E-value: 3.2e-06 AAA_15 50 kekknenkvikiekedlekfeniseskeikIdvefliefeyledkkkilklksk...kkskeyestlkskgkkkadlllkkke 129 k++++ + + i++ +l+ ++++ + kei++dv+ +++i+kl+++ ++s+ + +k+ + + ++l l++k+ 23726_FusoPortal_Gene_1869 524 KKQYF-ELEKSIKDLELSSKNEEINLKEIELDVKN--------LDMDINKLIENqefQNSQMLREKKKELEVELRNLNLDEKR 597 44455.35677889999999999999999999999........4444444444444455556666666666777899999999 PP AAA_15 130 kdlkklikdkklklkkneysdekisvekkkekkelekkkeeklekekaeikidkedlkklikkleeslnkee..lknvlksai 210 + lk+l+++ +++ +k +++++i+ + k++++++++ + ++++i+ k+++k +kl++ +n + +kn+ ++ 23726_FusoPortal_Gene_1869 598 ENLKNLLENLEIEKEKILKNQNSIESN----LKKIDEFSKKIKVDTNKNIESIKSEIKTFENKLDDLKNPYNeyIKNNVLAED 676 999999999888877666666665533....5566777777777777777777788888888787777777778555555555 PP AAA_15 211 iklllisadRnvsdedsekkssllgkllekileealqekleeeleeklkkieeklkeidkelaeelk..kilekkidkikkfg 291 + ll + d+n+++ s ++++l k + +ilee++++ ++el+ek + i+e+l+ei+k+l+++ + + ++k+++ki 23726_FusoPortal_Gene_1869 677 LENLLLKVDKNIKELYSLRTDKNLLKEKVSILEEKIKNIKIDELKEKYDIIKEELNEINKKLGSSQEkiDNYKKILEKI---- 755 556688999**************************999999*********************77666554445555554.... PP AAA_15 292 ykgkkneeieik....................................................................... 303 +++ee+e k 23726_FusoPortal_Gene_1869 756 ---SSQEEKEKKlliefkklenkfnkaslirnevgqmgraiskymlsgisniasvnfnkitgrteriewsneekdkyavylvg 835 ...44444444444445578899999********************************************************* PP AAA_15 304 dgeelplnynGsGvqrlillillileaekkdeneekinilaiEEPEahlHPqlqkvlikllkelannnktQviitTHSph 383 + ++ ++ + G q + +++ ++ e +++ + +++EP ++l ++ +k l++++ e++nn + Q ii TH + 23726_FusoPortal_Gene_1869 836 QERKIAFEQLSGGEQVSVAIAIRGTMTEYF----TNSKFMILDEPTNNLDTERKKLLAEYMGEILNNLE-QSIIVTHDDT 910 ******************************....**********************************9.*******876 PP >> SMC_N RecF/RecN/SMC N terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.7 0.9 1.2e-11 2.2e-08 2 83 .. 3 76 .. 2 122 .. 0.73 2 ? -25.1 68.6 9 1.7e+04 69 210 .. 541 920 .. 159 921 .. 0.80 Alignments for each domain: == domain 1 score: 33.7 bits; conditional E-value: 1.2e-11 EEEEEEESCSSEECEEEEE-TTSSEEEEEESTTSSHHHHHHHHHHHHTT.TSSS--HHHHCCCT--.SSSSSTTCCEEEECE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF SMC_N 2 lkrleienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitf 83 +k++++en++s ++++++f+k+++ i+G+NG GK+++l+Ai+ v+ +++ ++ + e+ ++ i+ k+ +v+i f 23726_FusoPortal_Gene_1869 3 IKKVQLENYRSH--SNITVEFTKGVNLILGKNGRGKTSILEAISTVMFNTKDRSGK-ETGKSYIKF-----GEKSSKVDINF 76 89**********..79****************************999876664443.344444444.....23344455555 PP == domain 2 score: -25.1 bits; conditional E-value: 9 SSSSSTTCCEEEECEEECCEE-B----BEEEEEEEETTT-EEEEETTEEE-HHHHHHHHHCTT--TT................ CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................ RF SMC_N 69 kekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkevsellesagiske................ 135 +++++++ e+e+ ++n d + 23726_FusoPortal_Gene_1869 541 SKNEEINLKEIELDVKNLDMD---------------------------------------------Inklienqefqnsqmlr 578 444444444455544444444.............................................03333333333334444 PP ................................................................................... CS ................................................................................... RF SMC_N 136 ................................................................................... 135 23726_FusoPortal_Gene_1869 579 ekkkelevelrnlnldekrenlknllenleiekekilknqnsiesnlkkidefskkikvdtnkniesikseiktfenklddlk 661 4444444444444444444444444444444444************************************************* PP ................................................................................... CS ................................................................................... RF SMC_N 136 ................................................................................... 135 23726_FusoPortal_Gene_1869 662 npyneyiknnvlaedlenlllkvdknikelyslrtdknllkekvsileekiknikidelkekydiikeelneinkklgssqek 744 *********************************************************************************** PP ................................................................................... CS ................................................................................... RF SMC_N 136 ................................................................................... 135 23726_FusoPortal_Gene_1869 745 idnykkilekissqeekekklliefkklenkfnkaslirnevgqmgraiskymlsgisniasvnfnkitgrteriewsneekd 827 *********************************************************************************** PP ................CS-HHHHHHHHHHHHHHHHT.CS--SEEEECSTTTTS-HHHHHHHHHHHHHHCCT.SEEEEE-SSHH CS ................xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF SMC_N 136 ................lLSgGektLvalaLlfAiqk.vkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislree 200 +LSgGe+ va+a++ + + + + +++lDe +LD ++ k +ae++ e +n Q i+++++++ 23726_FusoPortal_Gene_1869 828 kyavylvgqerkiafeQLSGGEQVSVAIAIRGTMTEyFTNSKFMILDEPTNNLDTERKKLLAEYMGEILNNlEQSIIVTHDDT 910 *******************************99665168889************************9988879********** PP HHTT-SCEEE CS xxxxxxxxxx RF SMC_N 201 mlekadklvg 210 + e a+k++ 23726_FusoPortal_Gene_1869 911 FREMAEKIIE 920 *999999875 PP >> AAA_29 P-loop containing region of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.0 0.0 1.3e-09 2.5e-06 2 50 .. 4 51 .. 3 58 .. 0.91 Alignments for each domain: == domain 1 score: 27.0 bits; conditional E-value: 1.3e-09 AAA_29 2 krlqlvNWgtfdghtieldlkgvtlltGpsGsGKSTllDAiqalLvpak 50 k++ql N + ++ t+e++ kgv l+ G++G GK+++l Ai++++ +k 23726_FusoPortal_Gene_1869 4 KKVQLENYRSHSNITVEFT-KGVNLILGKNGRGKTSILEAISTVMFNTK 51 68999999999999****8.889**********************9877 PP >> AAA_27 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.2 0.1 2.6e-09 4.8e-06 1 104 [. 1 110 [. 1 131 [. 0.75 2 ? -1.5 0.2 0.81 1.5e+03 158 198 .. 297 336 .. 292 343 .. 0.84 3 ? -3.7 0.2 3.8 7.1e+03 168 196 .. 484 513 .. 475 541 .. 0.58 4 ? -1.5 0.2 0.77 1.4e+03 157 196 .. 599 634 .. 595 644 .. 0.71 5 ? -0.9 0.1 0.53 9.8e+02 157 204 .. 676 722 .. 673 725 .. 0.87 Alignments for each domain: == domain 1 score: 26.2 bits; conditional E-value: 2.6e-09 AAA_27 1 MrlerLdLeryGkftdrsldfsaeeadlhliyGpNEAGKstalrAisdllfGipertkdn.....flhdakkLrigavleead 78 M +++ +Le y + ++ +++f +++ li+G N GK+++l+Ais ++f + r+ ++ + +k+ ++ + ++d 23726_FusoPortal_Gene_1869 1 MIIKKVQLENYRSHSNITVEFT---KGVNLILGKNGRGKTSILEAISTVMFNTKDRSGKEtgksyIKFGEKSSKVDINFIAND 80 99*******************8...8***************************999865412221346666667777776677 PP AAA_27 79 g....eelefaRrkgrkktlldaddqalpe 104 g + ef + k +k+tl d +++ + 23726_FusoPortal_Gene_1869 81 GreynLKTEFFKTKPKKQTLKDMIGSEYDG 110 622222456777888888888777776664 PP == domain 2 score: -1.5 bits; conditional E-value: 0.81 AAA_27 158 lrevleaLeaeadelfkprkskkrainealeeleeakkelr 198 +++ l++L+++ d+l +++k ++ ++++ e+le +k+l+ 23726_FusoPortal_Gene_1869 297 IEKRLKDLRENLDNLLDEQKLNT-QYQNNIEKLELSNKNLK 336 78899999999****99999999.89998888888877766 PP == domain 3 score: -3.7 bits; conditional E-value: 3.8 AAA_27 168 eadelfkprkskk.rainealeeleeakke 196 ea+++f+++ s k +++ + ++++ee ++ 23726_FusoPortal_Gene_1869 484 EAEDYFSSKISIKtEELENLKKSIEEKTQI 513 555555555554434444444444444443 PP == domain 4 score: -1.5 bits; conditional E-value: 0.77 AAA_27 157 slrevleaLeaeadelfkprkskkrainealeeleeakke 196 +l+++le+Le e++++ k+++s + l++++e +k+ 23726_FusoPortal_Gene_1869 599 NLKNLLENLEIEKEKILKNQNSIES----NLKKIDEFSKK 634 689999**********999988883....34444444443 PP == domain 5 score: -0.9 bits; conditional E-value: 0.53 AAA_27 157 slrevleaLeaeadelfkprkskkrainealeeleeakkelreaqvra 204 +l+++l +++++ +el++ r+ k+ ++e+ + lee k+++ +++++ 23726_FusoPortal_Gene_1869 676 DLENLLLKVDKNIKELYSLRTDKN-LLKEKVSILEEKIKNIKIDELKE 722 68899999************9999.99999999999999998888775 PP >> AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.2 5.8 1.8e-06 0.0034 1 99 [. 25 112 .. 25 222 .. 0.70 2 ? -7.1 11.8 9 1.7e+04 97 218 .. 289 411 .. 238 469 .. 0.53 3 ? 3.5 18.9 0.026 49 66 299 .. 578 909 .. 532 912 .. 0.77 Alignments for each domain: == domain 1 score: 17.2 bits; conditional E-value: 1.8e-06 AAA_21 1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqv 83 +n++ G+Ng GK+++L+a++ + + ++++++g++++k ++ +++ + +++f ++ + + + +++ + ++q 23726_FusoPortal_Gene_1869 25 VNLILGKNGRGKTSILEAISTV--------MFNTKDRSGKETGKSYIKFGEKSSKVDINFIANDGREYNLKTEFFKTKPKKQT 99 79*****************999........67*******************************65555555555555555555 PP AAA_21 84 eeklssvetllesgll 99 l++ + +g + 23726_FusoPortal_Gene_1869 100 ---LKDMIGSEYDGDI 112 ...3333333333333 PP == domain 2 score: -7.1 bits; conditional E-value: 9 AAA_21 97 gllldkrsleeedvfnpeargirggvsvfslkelsvsepndlqfgkaltditsrawsllllldglrke.rigllnifadyfgf 178 +l +++ e++ ++ e ++ +++ + + +e +l ++ + +di++ + + +++++ + +++ 23726_FusoPortal_Gene_1869 289 KSYLEYLNIEKRLKDLRENLDNLLDEQKLNTQYQNNIEKLELSNKNLKVDISNLEENISKNSEKKENLeSEISELKIKEENLD 371 44555555555555555555555555555555555555555555555555555555555555555555433333333444444 PP AAA_21 179 akekrllqrlvrslklveielsdlgegeeliasvderlre 218 k+k+++ l + kl ++++ +++++ ++++++d++ +e 23726_FusoPortal_Gene_1869 372 LKLKKYINLLDKLEKLENFKDKKSEDKLKKMTEIDFLKKE 411 4555555555555555555555555555555444444333 PP == domain 3 score: 3.5 bits; conditional E-value: 0.026 AAA_21 66 lsqgvryryglrlersqv.eeklssvetllesgllldkrsleeedvfnpeargirggvsvfslkelsvsepndlqfgkaltdi 147 +++++ + +lr + + +e l+++ ++le+ + ++ +++ + +++ + ++v +k+++ ++++++ f+ l+d+ 23726_FusoPortal_Gene_1869 578 REKKKELEVELRNLNLDEkRENLKNLLENLEIEKEKILKNQNSIESNLKKIDEFSKKIKVDTNKNIESIKSEIKTFENKLDDL 660 34555666666666666666677777777777888888888888888888888889999999999999999999999999999 PP AAA_21 148 tsrawsllllldglrke...rigllnifadyfgfakekrllqrlvrslklveielsdlgegeeliasvderlrer........ 219 +++++++ +++ + + + ++++ k+ll++ v+ l + + +++e +e+++ ++e l+e 23726_FusoPortal_Gene_1869 661 KNPYNEYIKNNVLAEDLenlLLKVDKNIKELYSLRTDKNLLKEKVSILEEKI-KNIKIDELKEKYDIIKEELNEInkklgssq 742 9999999998888777755544444444444444444444444444444443.333444445555555555555588888888 PP AAA_21 220 ................................................................................... 219 23726_FusoPortal_Gene_1869 743 ekidnykkilekissqeekekklliefkklenkfnkaslirnevgqmgraiskymlsgisniasvnfnkitgrteriewsnee 825 999999999999999999999999999999999999999999999999999999999999999999999************** PP AAA_21 220 ..gvvflengdgqelparelSdGtkrllalltallralkkg....sllliDEpEngLHPkllrrllell.kelsrngaQvilt 295 + + g+ +++ + +lS G + ++ a+ + + ++ ++DEp n+L+ ++ + l+e + ++l +n+ Q i++ 23726_FusoPortal_Gene_1869 826 kdKYAVYLVGQERKIAFEQLSGGEQVS--VAIAIRGTMTEYftnsKFMILDEPTNNLDTERKKLLAEYMgEIL-NNLEQSIIV 905 *************************99..6666666666667788*********************9995444.55999**** PP AAA_21 296 THSp 299 TH+ 23726_FusoPortal_Gene_1869 906 THDD 909 **96 PP >> TPR_MLP1_2 TPR/MLP1/MLP2-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.6 1.4 0.016 30 28 116 .. 113 202 .. 111 210 .. 0.61 2 ? 4.8 12.0 0.014 25 6 110 .. 173 276 .. 170 282 .. 0.70 3 ? 0.5 15.5 0.3 5.5e+02 63 116 .. 315 371 .. 279 387 .. 0.73 4 ? 3.2 3.0 0.044 81 85 117 .. 435 467 .. 423 468 .. 0.86 5 ? -1.6 2.4 1.3 2.4e+03 80 104 .. 493 517 .. 473 538 .. 0.64 6 ? -9.1 16.4 9 1.7e+04 54 116 .. 569 629 .. 525 635 .. 0.76 7 ? 15.6 8.5 6.4e-06 0.012 6 116 .. 639 749 .. 633 750 .. 0.94 8 ? 2.9 5.9 0.054 1e+02 60 112 .. 725 776 .. 718 780 .. 0.69 Alignments for each domain: == domain 1 score: 4.6 bits; conditional E-value: 0.016 TPR_MLP1_2 28 qedlekqaeiakeaqqkYerelvkhaedikelqalr.eelnelkqeiaelkaeaesakaeleeseesweeqkeelekelsele 109 qe+le+ i k ++ Ye+ ++ + ++ ++ +++ ++ +e+ ++i + + e + l+e+ ++ +e+ + l+ke++ l+ 23726_FusoPortal_Gene_1869 113 QEKLEELCGIKKGFEETYENIVIAKQNEFINIFKAKpKDREEIFNKIFNTQIYKEMYDSFLKEAVDKYKEKVKDLDKEITFLK 195 56666666666666666666666555554444444425556666666666666666777777777777777777777777777 PP TPR_MLP1_2 110 kriedln 116 + +ed + 23726_FusoPortal_Gene_1869 196 ENMEDKE 202 7776644 PP == domain 2 score: 4.8 bits; conditional E-value: 0.014 TPR_MLP1_2 6 leeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedikelqalreelnelkqeiaelka...eaesaka 85 l+e ++++ke+ ++++++++ l+e++e +++i++ ++ +e++k ++ k+ +++ e +n+l +ei++ ++ e++++ + 23726_FusoPortal_Gene_1869 173 LKEAVDKYKEKVKDLDKEITFLKENMEDKEQITNFLKE---EEIIK-NTLNKDFSKTTETINKLSNEIKDYETteiELNNLIK 251 67888999999999999999999999999999999988...66665.466678888888888888887766541114455555 PP TPR_MLP1_2 86 eleeseesweeqkeelekelselek 110 +++ +e+++++ + l++++ e+++ 23726_FusoPortal_Gene_1869 252 NIKDEENKIKKYLSLLKENIVEAKQ 276 5556666666666666666666555 PP == domain 3 score: 0.5 bits; conditional E-value: 0.3 TPR_MLP1_2 63 reelnelkqeiaelkaeaesak...aeleeseesweeqkeelekelselekriedln 116 + ++++ i++l+ +++++k ++lee+ ++ +e+ke+le+e+sel+ + e+l+ 23726_FusoPortal_Gene_1869 315 QKLNTQYQNNIEKLELSNKNLKvdiSNLEENISKNSEKKENLESEISELKIKEENLD 371 3444666677777777666666222567777778899************99988876 PP == domain 4 score: 3.2 bits; conditional E-value: 0.044 TPR_MLP1_2 85 aeleeseesweeqkeelekelselekriedlne 117 +ele++ + +eeqk +e+e++ l+k ++l++ 23726_FusoPortal_Gene_1869 435 QELEKELKLLEEQKIIFETEIKTLKKSSKELSD 467 47888899999***************9999975 PP == domain 5 score: -1.6 bits; conditional E-value: 1.3 TPR_MLP1_2 80 aesakaeleeseesweeqkeeleke 104 ++ele+ ++s+ee+ + l ++ 23726_FusoPortal_Gene_1869 493 ISIKTEELENLKKSIEEKTQILVEK 517 4445566666666666666666554 PP == domain 6 score: -9.1 bits; conditional E-value: 9 TPR_MLP1_2 54 edikelqalreelnelkqeiaelkaeaesakaeleeseesweeqkeelekelselekriedln 116 ++ ++ q lre+ +el+ e+++l+ +++ +++l++ e++e +ke++ k+ +++e+ ++ ++ 23726_FusoPortal_Gene_1869 569 QEFQNSQMLREKKKELEVELRNLN--LDEKRENLKNLLENLEIEKEKILKNQNSIESNLKKID 629 566778888888888888888775..5666777788888888888888877777777766554 PP == domain 7 score: 15.6 bits; conditional E-value: 6.4e-06 TPR_MLP1_2 6 leeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedikelqalreelnelkqeiaelkaeaesak.ael 87 +++i+s+k+e++ e+kl l++ ++ + a++ e+ l+k ++ikel +lr++ n lk++++ l+++ ++ k el 23726_FusoPortal_Gene_1869 639 TNKNIESIKSEIKTFENKLDDLKNPYNEYIKNNVLAED-LENLLLKVDKNIKELYSLRTDKNLLKEKVSILEEKIKNIKiDEL 720 67899***************************999998.*************************************998569* PP TPR_MLP1_2 88 eeseesweeqkeelekelselekriedln 116 +e+ + ++e+ +e+ k+l +++++i++ + 23726_FusoPortal_Gene_1869 721 KEKYDIIKEELNEINKKLGSSQEKIDNYK 749 *************************9865 PP == domain 8 score: 2.9 bits; conditional E-value: 0.054 TPR_MLP1_2 60 qalreelnelkqeiaelkaeaesakaeleeseesweeqkeelekelselekri 112 ++eelne+++++ + +++ ++ k+ le+ +s ee++++l e ++le++ 23726_FusoPortal_Gene_1869 725 DIIKEELNEINKKLGSSQEKIDNYKKILEK-ISSQEEKEKKLLIEFKKLENKF 776 446888888888888888888888776654.5566777777777777777775 PP >> SbcCD_C Putative exonuclease SbcCD, C subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 3.1e-05 0.058 29 88 .. 841 892 .. 823 894 .. 0.79 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 3.1e-05 SbcCD_C 29 ssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllell 88 +++lSGGe+ + +++a+ + ++++ ++++LDE ++lD e+ + l e++ 23726_FusoPortal_Gene_1869 841 AFEQLSGGEQ-VSVAIAIRGTMTEYFTN-------SKFMILDEPTNNLDTERKKLLAEYM 892 6789******.66666666666666666.......58**************988887765 PP >> WXG100 Proteins of 100 residues with WXG # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.3 0.2 0.43 8e+02 51 86 .] 167 203 .. 163 203 .. 0.81 2 ? -2.7 0.0 3.6 6.8e+03 13 22 .. 229 238 .. 215 262 .. 0.51 3 ? 1.0 0.0 0.25 4.7e+02 2 37 .. 335 370 .. 334 373 .. 0.89 4 ? -3.7 0.0 7.7 1.4e+04 2 21 .. 493 512 .. 492 515 .. 0.71 5 ? -1.8 0.0 1.9 3.5e+03 18 38 .. 641 661 .. 634 665 .. 0.61 6 ? 4.2 0.0 0.025 47 50 82 .. 721 753 .. 717 755 .. 0.83 Alignments for each domain: == domain 1 score: 0.3 bits; conditional E-value: 0.43 HHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS WXG100 51 aefe.ewkqaaqklvdaLeeisealkqaanafedaDe 86 ++++ +k+a++k++++ +++ ++++ ++++ed ++ 23726_FusoPortal_Gene_1869 167 EMYDsFLKEAVDKYKEKVKDLDKEITFLKENMEDKEQ 203 5666446788899999999999999999999999876 PP == domain 2 score: -2.7 bits; conditional E-value: 3.6 HHHHHHHHHH CS WXG100 13 aarfqkqaee 22 +++++++ ++ 23726_FusoPortal_Gene_1869 229 INKLSNEIKD 238 2333333333 PP == domain 3 score: 1.0 bits; conditional E-value: 0.25 HCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS WXG100 2 ikvdpeelrqaaarfqkqaeeledelqrlkaevdal 37 +kvd + l++ +++ ++++e+le+e+++lk + ++l 23726_FusoPortal_Gene_1869 335 LKVDISNLEENISKNSEKKENLESEISELKIKEENL 370 79999***********************99777766 PP == domain 4 score: -3.7 bits; conditional E-value: 7.7 HCSHHHHHHHHHHHHHHHHH CS WXG100 2 ikvdpeelrqaaarfqkqae 21 i++ +eel+ +++ ++ + 23726_FusoPortal_Gene_1869 493 ISIKTEELENLKKSIEEKTQ 512 67778888888887776655 PP == domain 5 score: -1.8 bits; conditional E-value: 1.9 HHHHHHHHHHHHHHHHHHHCG CS WXG100 18 kqaeeledelqrlkaevdalq 38 k+ e++++e+++ ++++d+l+ 23726_FusoPortal_Gene_1869 641 KNIESIKSEIKTFENKLDDLK 661 455566666666666666554 PP == domain 6 score: 4.2 bits; conditional E-value: 0.025 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS WXG100 50 qaefeewkqaaqklvdaLeeisealkqaanafe 82 ++ ++ +k+++++++++L + +e++++ ++ +e 23726_FusoPortal_Gene_1869 721 KEKYDIIKEELNEINKKLGSSQEKIDNYKKILE 753 678999999999999999999999998877766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (922 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 3413 (0.204225); expected 334.2 (0.02) Passed bias filter: 410 (0.0245333); expected 334.2 (0.02) Passed Vit filter: 155 (0.00927477); expected 16.7 (0.001) Passed Fwd filter: 57 (0.00341072); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 9 [number of targets reported over threshold] # CPU time: 1.88u 0.41s 00:00:02.29 Elapsed: 00:00:00.62 # Mc/sec: 4323.04 // [ok]