# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_187.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_187 [L=396] Description: # 199152 # 200339 # -1 # ID=1_187;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.271 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.9e-127 423.6 0.0 8.7e-127 423.2 0.0 1.1 1 DegT_DnrJ_EryC1 DegT/DnrJ/EryC1/StrS aminotransferase family 4.1e-08 32.7 0.1 1e-07 31.5 0.1 1.6 1 Beta_elim_lyase Beta-eliminating lyase 1.4e-06 27.4 0.1 2.6e-06 26.6 0.1 1.4 1 Aminotran_5 Aminotransferase class-V 3.7e-06 25.6 0.1 4.9e-06 25.2 0.1 1.1 1 Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme ------ inclusion threshold ------ 0.043 13.4 0.0 0.082 12.5 0.0 1.5 1 ComK ComK protein Domain annotation for each model (and alignments): >> DegT_DnrJ_EryC1 DegT/DnrJ/EryC1/StrS aminotransferase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 423.2 0.0 2.6e-130 8.7e-127 3 359 .. 16 391 .. 14 392 .. 0.95 Alignments for each domain: == domain 1 score: 423.2 bits; conditional E-value: 2.6e-130 HHHHHHHHHHHHTSS-SSSSHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-E CS DegT_DnrJ_EryC1 3 keeeleaveevlksgwltsgpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgak 86 k+++ ++ e+l++g +++gp++++FEk++ +ylgvkhai+v +Gt+Al +aL+alg+g+gdeVI+ ++tF+ata+a++ +ga 23726_FusoPortal_Gene_187 16 KKDIETTISEILEGGAYINGPQTKKFEKRMEEYLGVKHAIGVGNGTDALVIALEALGIGKGDEVITSPFTFFATAEAISVVGAI 99 67888999**************************************************************************** PP EEEE-B-TTTSSB-GGGCGGG--TTEEEEEEB-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT-EETTEECCCSSSEEEEE-B CS DegT_DnrJ_EryC1 87 pvfvDvdpdtynidpaaieaaitertkaIlpVhlyGqvadmdalkaiaakhglkvieDaAhAlGatykgkkvGalgdaavfSFy 170 pvfvDv+ +++nid ++ie+ait++tkaI+pVh++G +a+md++++ia+k +l+vieDa++A+Ga+yk+k+vG+l+d+a+fSF+ 23726_FusoPortal_Gene_187 100 PVFVDVKLEDFNIDENKIEKAITPKTKAIIPVHIFGTPANMDRINEIAKKNNLYVIEDACQAIGAKYKDKMVGTLSDIACFSFF 183 ************************************************************************************ PP TTSSS.-SSS-EEEEESTHHHHHHHHHHHBTTCECCTCSSCECCS...........................---B-B-BHHHH CS DegT_DnrJ_EryC1 171 ptKnl.ttGeGGavvtndeelaekarvlrnhGlkrkaekryvgev...........................lGynyrlteiqA 226 ptKnl t+G+GG+++tnd+ a+++r+l++hG+ ++ e y + + +G+n+rl+e++A 23726_FusoPortal_Gene_187 184 PTKNLgTYGDGGLITTNDDSFATICRALKAHGSGENGEIAYNS-LnnikeevkvdnqvddtvynpkkyynylIGHNSRLDELHA 266 *********************************9744444444.34889999******************************** PP HHHHHHHCTHHHHHHHHHHHHHHHHHHHHTCCCCEESCGGTTSSSEEESCEEEEEHCCHHHCHHHHHHHHHHCCEE-B-SGSCH CS DegT_DnrJ_EryC1 227 AiglaqLerldelvarRreiaelykeeLaelegtaelttpketkkhawhlyavlveeeaevkrdelvealkeegigtrvhypnp 310 i++++L++lde++++R++ia++y+e+L + +++ ++++ +++ +++h y++++e +r+el ++l+e+gi+ v+yp+p 23726_FusoPortal_Gene_187 267 GILNVKLNYLDEWNKKRNDIAKYYNEKLDDKKYK-KMQLREDNY-NVYHMYIIQTE-----NRNELTKKLDEAGIAYGVYYPVP 343 ******************************9975.777777776.9********99.....89********************* PP GGGSCCHHHHHHCCCHC-HHHHHHHHHEEEEEGGTTGSHHHHHHHHHHH CS DegT_DnrJ_EryC1 311 lhrqpvyaerkeeasgdlpnaerlaervlsLplypelteedvdrVveal 359 lh+q+vy++ +++gdlpnae l++r+l++p+ peltee+ +++v+ l 23726_FusoPortal_Gene_187 344 LHLQKVYKNLG-YKEGDLPNAEYLSKRTLAIPVDPELTEEEKEYIVNIL 391 **********6.7789*****************************9976 PP >> Beta_elim_lyase Beta-eliminating lyase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.5 0.1 3e-11 1e-07 27 216 .. 31 273 .. 21 338 .. 0.65 Alignments for each domain: == domain 1 score: 31.5 bits; conditional E-value: 3e-11 CCT--HHHHHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH-.-TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTT.TB CS Beta_elim_lyase 27 sYgedktvnrLedavaelfgkeaalfvpqGtaAnsillkill.qrgeevivtepahihfdetgaiaelagvklrdlknkea.Gk 108 +Y + ++++++e++++e++g ++a+ v +Gt A i+l++l +g+evi + ++f ++ ai++++ + ++ ++ k + + 23726_FusoPortal_Gene_187 31 AYINGPQTKKFEKRMEEYLGVKHAIGVGNGTDALVIALEALGiGKGDEVITS--PFTFFATAEAISVVG-AIPVFVDVKLEdFN 111 788999********************************99987899998643..345666666666664.44666665533289 PP E-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHH..TTSS CS Beta_elim_lyase 109 mdlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemf..syvD 190 +d +k+e+ai+++ +k+i+ G+ +++++++ +iakk+++ ++ D++ + a + k+ + D 23726_FusoPortal_Gene_187 112 IDENKIEKAITPK------TKAIIPVHIF----GT---PANMDRINEIAKKNNLYVIEDACQAIGA------KYKDKMvgTLSD 176 999*********4......4455433322....55...5677788899**********98765555......444333245566 PP EEEEES..SSTT--.SS-EEEEE-HH.......................................................... CS Beta_elim_lyase 191 svtmsl..kKdlla.nvGgvlafrddel........................................................ 215 + ++s+ +K+l++ Gg++ ++dd+ 23726_FusoPortal_Gene_187 177 IACFSFfpTKNLGTyGDGGLITTNDDSFaticralkahgsgengeiaynslnnikeevkvdnqvddtvynpkkyynylighnsr 260 666665559998872455888888885566666666666666666666665555555555555555555555555555555555 PP ............. CS Beta_elim_lyase 216 ............e 216 23726_FusoPortal_Gene_187 261 ldelhagilnvkL 273 5555555554442 PP >> Aminotran_5 Aminotransferase class-V # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.6 0.1 7.7e-10 2.6e-06 66 184 .. 56 166 .. 37 202 .. 0.80 Alignments for each domain: == domain 1 score: 26.6 bits; conditional E-value: 7.7e-10 EESSHHHHHHHHHHHCHHH-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBE CS Aminotran_5 66 ftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvs 149 + ++t+a+ +++ +l+ + +gde++++ a+ ++ + + v v + e+ ++d +++ek++++ktk+++ h 23726_FusoPortal_Gene_187 56 GVGNGTDALVIALEALG--IGKGDEVITSPFTFFATAEAISVVG---AIPVFVDVKLEDFNIDENKIEKAITPKTKAIIPVH-- 132 56688999999998884..9***************995555554...4566555666999******************9999.. PP TTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS- CS Aminotran_5 150 nvtGtiqpveeigklakkkgalvlvDaaqavghip 184 + Gt +++i+++akk++ +v+ Da+qa+g + 23726_FusoPortal_Gene_187 133 -IFGTPANMDRINEIAKKNNLYVIEDACQAIGAKY 166 .69****************************9754 PP >> Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.2 0.1 1.5e-09 4.9e-06 50 218 .. 34 203 .. 8 231 .. 0.81 Alignments for each domain: == domain 1 score: 25.2 bits; conditional E-value: 1.5e-09 --HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTT.S-TTEEEEEESTSSHHHHHHHHHTHHH.TTCEEEEESTT.SHHHH CS Cys_Met_Meta_PP 50 gnptrevlekkiaaLeggeaalavssGmaAiaaallal.lkaGdhivatddlYggtqrllekvlkk.lgievkfvdts.dleel 130 + p ++ +ek++ + g+++a+ v G+ A++ al al + +Gd+++++ + t + ++ v + ++vk d + d +++ 23726_FusoPortal_Gene_187 34 NGPQTKKFEKRMEEYLGVKHAIGVGNGTDALVIALEALgIGKGDEVITSPFTFFATAEAISVVGAIpVFVDVKLEDFNiDENKI 117 56999**************************99999986789******************99977658899999998537899* PP HHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHTTTS-GGGGT..-SEEEEET..TTTTTTSSS--EEE CS Cys_Met_Meta_PP 131 ekaikentklvylEtptnpllkvvDieaiaklakkagvlvvvDntfaspllqkplelg..aDivvhSa..TKylgGhsdvvgGv 210 ekai+++tk++ p ++ + + +i ++akk+++ v+ D++ a ++ k g Di + S TK lg +d gG+ 23726_FusoPortal_Gene_187 118 EKAITPKTKAII---PVHIFGTPANMDRINEIAKKNNLYVIEDACQAIGAKYKDKMVGtlSDIACFSFfpTKNLGTYGD--GGL 196 **********96...777777788899****************999988777666666557888877544777777777..677 PP EEESSCHH CS Cys_Met_Meta_PP 211 vvvkgkee 218 +++++ ++ 23726_FusoPortal_Gene_187 197 ITTND-DS 203 77666.44 PP >> ComK ComK protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 0.0 2.5e-05 0.082 5 63 .. 120 173 .. 116 184 .. 0.83 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 2.5e-05 ComK 5 vinketmailpvvdekgkltskvieeedeefivkqkplqiiekScryygssyegrkeat 63 i+++t ai+pv ++ g +++ +e i k++ l +ie++c+ +g++y+ ++ +t 23726_FusoPortal_Gene_187 120 AITPKTKAIIPV-HIFGT--PANMDRINE--IAKKNNLYVIEDACQAIGAKYKDKMVGT 173 7999********.66655..355666666..999*********************9988 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (396 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 957 (0.0572642); expected 334.2 (0.02) Passed bias filter: 446 (0.0266874); expected 334.2 (0.02) Passed Vit filter: 35 (0.0020943); expected 16.7 (0.001) Passed Fwd filter: 5 (0.000299186); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.29u 0.24s 00:00:00.53 Elapsed: 00:00:00.33 # Mc/sec: 3488.44 // [ok]