# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1880.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1880 [L=494] Description: # 2015257 # 2016738 # 1 # ID=1_1880;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.254 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-16 60.9 5.3 1.9e-16 60.3 3.0 2.4 2 DDE_Tnp_1 Transposase DDE domain 1.5e-15 57.4 0.8 4.9e-15 55.7 0.2 2.0 2 DDE_Tnp_1_6 Transposase DDE domain 4.1e-11 42.6 0.0 4e-10 39.5 0.0 2.5 2 DUF772 Transposase domain (DUF772) ------ inclusion threshold ------ 0.024 14.6 0.0 0.054 13.4 0.0 1.6 1 DDE_Tnp_1_assoc DDE_Tnp_1-associated 0.078 13.1 0.4 0.24 11.5 0.4 1.8 1 Condensin2nSMC Condensin II non structural maintenance of c Domain annotation for each model (and alignments): >> DDE_Tnp_1 Transposase DDE domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.1 0.0 0.35 1.2e+03 180 208 .. 193 220 .. 192 225 .. 0.90 2 ! 60.3 3.0 5.7e-20 1.9e-16 11 214 .] 252 471 .. 246 471 .. 0.74 Alignments for each domain: == domain 1 score: -1.1 bits; conditional E-value: 0.35 DDE_Tnp_1 180 vFkwlkrkfgldrlryrglnrveaqllll 208 +F+ lk +++ + + rg+++ ++ql+l 23726_FusoPortal_Gene_1880 193 IFSYLKK-LKIQKIYGRGKRKSKEQLFLE 220 6999999.****************99985 PP == domain 2 score: 60.3 bits; conditional E-value: 5.7e-20 DDE_Tnp_1 11 attvrvpgtkedarwgykggkykygyklhiavdtrsglilsvvitpgnvhdskglkqlldelrpr..kgklvlaDaGYasael 91 at++r+++ + +g+ k+gy+l+i v + i s++i n +d+k+l+++l+ +r + + k v+aDaGY s ++ 23726_FusoPortal_Gene_1880 252 ATFMRMKEDY------MRNGQLKPGYNLQIGVISEY--IASYEI-FHNPADTKTLIPFLEKIRSQniEIKNVVADAGYESFPN 325 7888877766......779*************8887..******.************************************** PP DDE_Tnp_1 92 ldtleekgvdyiirl....kkntklyrk..............gaeskrrgrlrkhdrnkiltksqkrrnk............. 143 +++le++++ i++ k++t++y+k + + 23726_FusoPortal_Gene_1880 326 YEYLEKNNYVSYIKPiyyeKSKTRKYQKnlnrvenleydekeN--------------------------Rlfrkdglelefqy 382 *****88877777777888888888877766644433322220..........................22222233333333 PP DDE_Tnp_1 144 ..................skkekgdvyyvtntnsellsaeev.aelyrlRwqiErvFkwlkrkfgldrlryrglnrveaqlll 207 k ++ +++ +++ + + +++ +q+E F+ lk +++l++l++rg+n +++++ l 23726_FusoPortal_Gene_1880 383 ygedgktiyfknpetekiI-KYNNEFRRLSKKSKDNIESDLGkQLRMNRSIQVEGAFAVLKEDMKLRKLKVRGKNSTKREIGL 464 3446667776666666643.3333333344444444444444045566667******************************** PP DDE_Tnp_1 208 lllalnl 214 ++a+n+ 23726_FusoPortal_Gene_1880 465 FCIAYNF 471 ******7 PP >> DDE_Tnp_1_6 Transposase DDE domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.4 0.0 0.7 2.3e+03 87 114 .. 193 219 .. 158 229 .. 0.81 2 ! 55.7 0.2 1.5e-18 4.9e-15 47 124 .. 397 474 .. 392 475 .. 0.94 Alignments for each domain: == domain 1 score: -1.4 bits; conditional E-value: 0.7 DDE_Tnp_1_6 87 vfaqikenlglrrfrlrGlkkvklqvll 114 +f+ +k +l+++++ rG++k k q++l 23726_FusoPortal_Gene_1880 193 IFSYLK-KLKIQKIYGRGKRKSKEQLFL 219 566666.889999999999999998887 PP == domain 2 score: 55.7 bits; conditional E-value: 1.5e-18 DDE_Tnp_1_6 47 kgrkltirpeleelaekarerikseegkaeykkRsitvEgvfaqikenlglrrfrlrGlkkvklqvllvalalNlkkl 124 +++ ++++ e+++l++k++++i+s+ gk+++++Rsi+vEg+fa +ke+++lr++++rG++++k ++ l+++a+N++k+ 23726_FusoPortal_Gene_1880 397 TEKIIKYNNEFRRLSKKSKDNIESDLGKQLRMNRSIQVEGAFAVLKEDMKLRKLKVRGKNSTKREIGLFCIAYNFNKY 474 4677899999******************************************************************97 PP >> DUF772 Transposase domain (DUF772) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.5 0.0 1.2e-13 4e-10 4 72 .. 55 121 .. 53 123 .. 0.94 2 ? -1.0 0.0 0.5 1.7e+03 26 41 .. 396 411 .. 393 417 .. 0.87 Alignments for each domain: == domain 1 score: 39.5 bits; conditional E-value: 1.2e-13 DUF772 4 ayppelmlkllllqylygl.SdreleealrdnlsfrwflgldleedpvpdhstlsrfRkrlee.lerlfee 72 ++p+ m+ +++++y +g S r++e +rd+ + +++l + +vp++st+srf ++ + + +lf + 23726_FusoPortal_Gene_1880 55 KVHPVNMFAVIIYAYSQGKySTRDIEFLCRDSQRTQYLLN----SLNVPSYSTISRFLSKASDiIYELFCQ 121 589**************999********************....578**************9999999987 PP == domain 2 score: -1.0 bits; conditional E-value: 0.5 DUF772 26 eleealrdnlsfrwfl 41 e+e+ +++n +fr++ 23726_FusoPortal_Gene_1880 396 ETEKIIKYNNEFRRLS 411 899**********986 PP >> DDE_Tnp_1_assoc DDE_Tnp_1-associated # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 0.0 1.6e-05 0.054 18 74 .. 57 110 .. 51 121 .. 0.80 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 1.6e-05 DDE_Tnp_1_assoc 18 hpladiLlialcaviagadsweeieefakekeewlreflelengiPshdtirrvlsr 74 hp+ ++++++++a g s ++ie +++ ++ + + n +Ps++ti+r+ls+ 23726_FusoPortal_Gene_1880 57 HPV-NMFAVIIYAYSQGKYSTRDIEFLCRDSQRTQYLL-NSLN-VPSYSTISRFLSK 110 554.589999**************99988877654444.5555.***********97 PP >> Condensin2nSMC Condensin II non structural maintenance of chromosomes subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 0.4 7.1e-05 0.24 27 100 .. 121 196 .. 105 205 .. 0.70 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 7.1e-05 Condensin2nSMC 27 slikeilk..aiksqipklsksvleaygeilfraWkkasgelkeeieesciqdlmqhalhakrkklakklrklLse 100 +++++++k i + + +++eay++ + +Wkk++ ++ke++ee++++ + + + +++k ++ ++ s+ 23726_FusoPortal_Gene_1880 121 QFVEKLFKlsEIPTETIYIDGTKIEAYANKYSFVWKKSTLKYKEKLEENILELIDEFNKYFNKEKELDNIFDIFSY 196 56666666333445556677799**************************986554444444445555555555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (494 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1220 (0.0730014); expected 334.2 (0.02) Passed bias filter: 385 (0.0230373); expected 334.2 (0.02) Passed Vit filter: 35 (0.0020943); expected 16.7 (0.001) Passed Fwd filter: 5 (0.000299186); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.29u 0.22s 00:00:00.51 Elapsed: 00:00:00.32 # Mc/sec: 4487.73 // [ok]