# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1890.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1890 [L=750] Description: # 2028269 # 2030518 # 1 # ID=1_1890;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.281 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-38 131.9 30.1 7.9e-36 124.8 30.1 2.1 1 TonB_dep_Rec TonB dependent receptor 1.7e-19 70.3 1.8 1.8e-19 70.2 0.3 1.8 2 Plug TonB-dependent Receptor Plug Domain 6.1e-09 35.2 0.3 6.1e-09 35.2 0.3 4.5 4 OMP_b-brl_3 Outer membrane protein beta-barrel family 0.0037 17.1 7.5 0.02 14.8 1.7 3.4 4 DUF2490 Protein of unknown function (DUF2490) 0.0071 16.4 24.5 0.0096 16.0 9.5 4.4 4 OMP_b-brl Outer membrane protein beta-barrel domain Domain annotation for each model (and alignments): >> TonB_dep_Rec TonB dependent receptor # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 124.8 30.1 2.4e-39 7.9e-36 36 470 .] 221 748 .. 131 748 .. 0.68 Alignments for each domain: == domain 1 score: 124.8 bits; conditional E-value: 2.4e-39 E.........................CEEEEEEEEECCC.EECCCEEEEEEEEEEEEECEEEECCEEEEEEEEEEEEEEEEEE CS TonB_dep_Rec 36 r.........................gylgtnplyygdn.ysetdnkrlrlgydydlddnlswklslraglnYsstdgdsdyn 92 l +n++ g n + +t++++++++y+y + n +l+ + Y + ++++ ++ 23726_FusoPortal_Gene_1890 221 InaknrfrfqtrfsdikqdssnqipvEELKNNRRKAGLNmDIDTKDRSYTFDYEYRPTQN--I--TLS-TSLYKQEQDRDINT 298 033323333322333333222233332222222122222234444555555555554444..4..444.44466444444444 PP EEEEEE.........CEEEEEEEEEEE...........EEEEEEEEEEEEEECEEE...CEEEEEEEEEEEEE.........E CS TonB_dep_Rec 93 nsglgg.........grsynrdndyyg...........lgnvlaaeldlngdlwfG...snladgldyrklsd.........d 143 +s + + +++++++ +y+ + ++l ++ ++++l +G s + g+dy+ +++ + 23726_FusoPortal_Gene_1890 299 ESID-DikiiasnrrFSHITQEKIFYDvksemqakfeeDKKGLKVKAKFDYNL-VGdnvSETILGFDYQTSTNkrnslvqseT 379 4422.246877755433333333333322222223334555555555557774.78888888888999963333556775553 PP ECCCEESCCTC.............ECEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEETTESSSS............... CS TonB_dep_Rec 144 gydaydplnps.............gdasdsvdrdsyglyaqdnikltdrltltlGlRydhysvfgkdlrag............ 201 ++yd+ ++ + + + + +s g+y + + l++ l++tlG+R ++++++g ++ 23726_FusoPortal_Gene_1890 380 LKNYYDSSIGGfrnldsadrspiiNKVDMKMTKKSEGIYIFNKWGLSNWLDVTLGGRMERTKYNGYRENGPnvmpyvtpekkr 462 3333333333355566666667766666666666669*********8888**************8888888999999887776 PP .EEEEEEEEEEEEEEEEEECCTTEEEEEEEEEEEE--THHCHCCCEE................EGGGTEEECCSTT---EEEE CS TonB_dep_Rec 202 .afsrsgsafsPsvglryrptddlslrasysrgfraPslgelyaggs................ngaggalsngnpdLkPEtsk 267 + + + +++ +gl ++ +d +++ y rgf P ++l+ ++ ++ + +n Lk E+++ 23726_FusoPortal_Gene_1890 463 iDTDEKLTNYAGELGLLFKYNDTGRIYTRYERGFVTPFGNQLTDKIHdtelknkqagiivppsVNVASKYVANN--LKSEKTD 543 655555599**************************886666666444888998877777765422233333336..******* PP EEEEEEE.EEETTEEEEEEEEEEEEEEEEEEESSSCTSTTCCTEEEEEEEEEEEEEEEEEEEEEECTTEEEEEEEEEEEEEEE CS TonB_dep_Rec 268 nyelGlk.ldddrlnltlayFridiknfittdpdgpslgglgdfqyqNvgkarikGvElelsyrltpgWglglsgggytYyda 349 ++e+G++ + +++ ++ ++F +d+++ it ++g ++ + + y+N+gk+r G+E+e+ + +++++++s + + ++ 23726_FusoPortal_Gene_1890 544 TFEIGFRdYIWGSS-ISTSFFLTDTTDEITLISSGVTNPAVNRWKYRNIGKTRRLGIEFEAEQN-IGKFRFNQSLTLVR-TKV 623 *******9877888.**********************999999****************99777.44477766666333.444 PP ..EECCCCBCTTTSCCCEESEEEEEEEEEESSSCCEEEEECEEEE.EEEEECEEEEEECECCEE..........EE--EEEEE CS TonB_dep_Rec 350 ..gddsdaddggnplpnvPkhtanlgltYkfpaggWgaglllaga.rYvavggrrygdaantfr..........rvpgYtlld 419 +d++ +g+++p vP+++a+lg++Y + ++++l +g+ +Yv+ +++ +++ +++ ++g ++l 23726_FusoPortal_Gene_1890 624 liANDEARIAKGDQVPMVPRLKATLGVKY-N----FTDRL--SGYlNYVYLAKQESRELRENPDiskddvvvkhTIGGHGTLE 699 443337899********************.6....88888..45558888888666655544445677889999********* PP EEEEEECSSSEEEEEEEESTT-TSSCEEESTTTSCCEEB--SEEEEEEEEE CS TonB_dep_Rec 420 lslgYklpknltlslgvnNLfdkryyassgyyglggypgpgRtfrlglryk 470 + l+Yk+++ + +g++N++ ++ y+ + l + p+p R+++l l+++ 23726_FusoPortal_Gene_1890 700 AGLSYKPDNYSDIKIGAKNIL-SNKYNLRETS-LEALPAPKRNYYLQLNVR 748 *****8875559999******.3445555555.9**************986 PP >> Plug TonB-dependent Receptor Plug Domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 70.2 0.3 5.5e-23 1.8e-19 7 108 .] 45 148 .. 41 148 .. 0.94 2 ? -3.4 0.1 4.1 1.4e+04 74 92 .. 289 307 .. 280 309 .. 0.71 Alignments for each domain: == domain 1 score: 70.2 bits; conditional E-value: 5.5e-23 SEEEEEEHHHHHHTTTSSHHHHHTTSTTEECBCCECSTTSEEEEETTB-G...GGSEEEETTEEESC..TCCSCTCCTSSBGG CS Plug 7 gsvsvvtaediekqgatsladalqgvpgvnvsssgggggassisiRGlgs...nrvlvlvDGvpian..ggsgagdlssidpe 84 +++ v+t+e i++++ ++++d+l+ pgv v +++ +++i +RG g+ +rv+vlvDGv i+ + ++ +++ i++e 23726_FusoPortal_Gene_1890 45 KNTFVITQERIREKNYKNVEDILRDAPGVVV---QNTAFGPRIDMRGSGEkslSRVKVLVDGVSINPteETMASLPINAIPVE 124 67889*************************9...8888999*******9999*************99888888889******* PP GEEEEEEEESCHHHTCSSTCSSEE CS Plug 85 dierievlkGpasalyGsdaigGv 108 i++ie++ G+ ++lyGs+++gGv 23726_FusoPortal_Gene_1890 125 SIKKIEIIPGGGATLYGSGSVGGV 148 ***********************8 PP == domain 2 score: -3.4 bits; conditional E-value: 4.1 SCTCCTSSBGGGEEEEEEE CS Plug 74 gagdlssidpedierievl 92 + + ++i++e i+ i ++ 23726_FusoPortal_Gene_1890 289 KQEQDRDINTESIDDIKII 307 5566678888888888876 PP >> OMP_b-brl_3 Outer membrane protein beta-barrel family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.1 11.8 0.4 1.3e+03 274 380 .. 139 243 .. 135 275 .. 0.54 2 ? -3.4 5.5 0.97 3.2e+03 12 82 .. 281 349 .. 262 389 .. 0.49 3 ? 1.1 0.1 0.042 1.4e+02 127 147 .. 428 448 .. 403 504 .. 0.83 4 ! 35.2 0.3 1.8e-12 6.1e-09 212 347 .. 536 679 .. 534 703 .. 0.77 Alignments for each domain: == domain 1 score: -2.1 bits; conditional E-value: 0.4 OMP_b-brl_3 274 lslslnptkwwslnanlnlyynkskidgslns.dvsnkgfswnlnntftlpkkislqlngfyrspqvtaqgkrkafysvdlgl 355 l++s ++ s+++n n+ ++ +d n ++n +f + + ++++k++ ++ + y + + + k++ + lg+ 23726_FusoPortal_Gene_1890 139 LYGSGSVGGVVSISTNSNVTKDNFFMDL--NYgSYDNRNFGFAGG--YNFNKNLYVNYGFSYLNSEDYREHEEKENKIYLLGF 217 5555555555666666666533333333..222555555555433..344466666666666666666666666666666666 PP OMP_b-brl_3 356 sksflk.kkltlslnvnDifntrkrr 380 +++ +++ ++ +++Di + + ++ 23726_FusoPortal_Gene_1890 218 DYKINAkNRFRFQTRFSDIKQDSSNQ 243 66664315566666666665544444 PP == domain 2 score: -3.4 bits; conditional E-value: 0.97 OMP_b-brl_3 12 adadysknkndensditnedlnepdgaeptnnslqrndndqknneytfqlDYtnplskkgk.leaGykysfr 82 ++++ s +k+++++di++e++++ + ++ + ++ q++ y ++ + ++ ++ k l++ +k+ ++ 23726_FusoPortal_Gene_1890 281 ITLSTSLYKQEQDRDINTESIDDIK---IIASNRRFSHITQEKIFYDVKSEMQAKFEEDKKgLKVKAKFDYN 349 3344444555555555555443322...22222222233333444555555555555544334444444444 PP == domain 3 score: 1.1 bits; conditional E-value: 0.042 OMP_b-brl_3 127 kfsykaGlRaEytnikgesst 147 +++ +G R+E t+++g+ ++ 23726_FusoPortal_Gene_1890 428 WLDVTLGGRMERTKYNGYREN 448 468899999999999998554 PP == domain 4 score: 35.2 bits; conditional E-value: 1.8e-12 OMP_b-brl_3 212 nLkPeftnsfelgyskk.wk..ltlslsyrytndniqitvitddnnnvllttyeNlgksqsyglelslslnptkwwslnanln 291 nLk+e+t+ fe+g+ w +++s +++ t+d+i+ ++ ++n+ v + y+N+gk++++g+e+ + +n+ k +++n +l+ 23726_FusoPortal_Gene_1890 536 NLKSEKTDTFEIGFRDYiWGssISTSFFLTDTTDEITLISSGVTNPAVNRWKYRNIGKTRRLGIEFEAEQNIGK-FRFNQSLT 617 8************765435534888888888888888899999****************************987.79999999 PP OMP_b-brl_3 292 lyynkskidgslnsdvsnkg.fsw.....nlnntftlpkkislqlngfyrspqvtaqgkrka 347 l k i +++ + ++ ++ +l +++++ +s ln+ y ++q++ + ++ 23726_FusoPortal_Gene_1890 618 LVRTKVLIANDEARIAKGDQvPMVprlkaTLGVKYNFTDRLSGYLNYVYLAKQESRELRENP 679 99888888776655444444233354433456688888899999999999999887777666 PP >> DUF2490 Protein of unknown function (DUF2490) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.8 1.7 5.9e-06 0.02 38 106 .. 175 239 .. 149 244 .. 0.68 2 ? 0.1 0.0 0.18 6.1e+02 145 181 .. 244 281 .. 238 287 .. 0.84 3 ? 2.4 0.1 0.037 1.2e+02 146 179 .. 637 670 .. 585 678 .. 0.64 4 ? 2.3 0.0 0.041 1.4e+02 39 60 .. 646 670 .. 626 700 .. 0.71 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 5.9e-06 DUF2490 38 llrpglgyklnkklsvslgyay.eeekekkknntedriw.qqflitlkklgrftlshRfRlEqRfragkds 106 + ++gy++nk+l v g+ y + e+ ++++ +e+ i+ f ++ ++ ++RfR++ Rf++ k++ 23726_FusoPortal_Gene_1890 175 NFGFAGGYNFNKNLYVNYGFSYlNSEDYREHEEKENKIYlLGFDYK------INAKNRFRFQTRFSDIKQD 239 467889****************543333333445555554444444......6677888888887665555 PP == domain 2 score: 0.1 bits; conditional E-value: 0.18 DUF2490 145 argngfdqnRlyaglgykl.nkkltlelgYmnqflnrs 181 + ++++ nR agl+ ++ +k ++ + Y ++ +++ 23726_FusoPortal_Gene_1890 244 IPVEELKNNRRKAGLNMDIdTKDRSYTFDYEYRPTQNI 281 56788999***********9999999999999988775 PP == domain 3 score: 2.4 bits; conditional E-value: 0.037 DUF2490 146 rgngfdqnRlyaglgyklnkkltlelgYmnqfln 179 + + + +++g++y+++++l+ l Y++ ++ 23726_FusoPortal_Gene_1890 637 QVPMVPRLKATLGVKYNFTDRLSGYLNYVYLAKQ 670 5555555555566666666655555555554433 PP == domain 4 score: 2.3 bits; conditional E-value: 0.041 DUF2490 39 lrpglgyklnkklsvslgyay...e 60 + g+ y+++++ls l y y + 23726_FusoPortal_Gene_1890 646 ATLGVKYNFTDRLSGYLNYVYlakQ 670 4568888888888888888884321 PP >> OMP_b-brl Outer membrane protein beta-barrel domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.0 9.5 2.9e-06 0.0096 23 95 .. 144 227 .. 136 235 .. 0.62 2 ? 1.4 1.0 0.086 2.9e+02 43 64 .. 266 287 .. 215 389 .. 0.50 3 ? 1.9 0.5 0.06 2e+02 75 111 .. 446 496 .. 403 549 .. 0.66 4 ! 5.2 0.0 0.006 20 135 160 .. 647 676 .. 636 719 .. 0.75 Alignments for each domain: == domain 1 score: 16.0 bits; conditional E-value: 2.9e-06 OMP_b-brl 23 yvggglgls...kvkvdgv..gsds......gfgfgvgagyefndnvgvegglsysgdkdysgsgktdikinlls.....vpv 89 vgg +++s +v++d++ + + +fg+ +gy+fn+n+ v +g+sy++++dy + k+n + + + 23726_FusoPortal_Gene_1890 144 SVGGVVSIStnsNVTKDNFfmD--LnygsydNRNFGFAGGYNFNKNLYVNYGFSYLNSEDYREH---EEKENKIYllgfdYKI 221 4565555552224554555332..144555468**********************999999885...4443333322233444 PP OMP_b-brl 90 nagyaf 95 na+ +f 23726_FusoPortal_Gene_1890 222 NAKNRF 227 444444 PP == domain 2 score: 1.4 bits; conditional E-value: 0.086 OMP_b-brl 43 gfgfgvgagyefndnvgveggl 64 + +++ ++y+ ++n+ ++ +l 23726_FusoPortal_Gene_1890 266 DRSYTFDYEYRPTQNITLSTSL 287 2334444444444444444444 PP == domain 3 score: 1.9 bits; conditional E-value: 0.06 OMP_b-brl 75 s..............gktdikinllsvpvnagyafnlsdsvlpyggaGlgy 111 + d++++l+++ + +g+ f +d+ ++y + g+ 23726_FusoPortal_Gene_1890 446 RengpnvmpyvtpekKRIDTDEKLTNYAGELGLLFKYNDTGRIYTRYERGF 496 233444667777777778889999999999999999999988888777774 PP == domain 4 score: 5.2 bits; conditional E-value: 0.006 OMP_b-brl 135 gaGveyaladnwslkaeYrytdlks....d 160 +Gv+y+++d++s ++Y y + + 23726_FusoPortal_Gene_1890 647 TLGVKYNFTDRLSGYLNYVYLAKQEsrelR 676 578999999999999999886664445441 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (750 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 589 (0.0352441); expected 334.2 (0.02) Passed bias filter: 283 (0.0169339); expected 334.2 (0.02) Passed Vit filter: 22 (0.00131642); expected 16.7 (0.001) Passed Fwd filter: 5 (0.000299186); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.34 # Mc/sec: 6412.57 // [ok]