# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1893.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1893 [L=403] Description: # 2036088 # 2037296 # -1 # ID=1_1893;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.337 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4e-94 314.7 0.5 7.4e-94 313.8 0.3 1.5 2 Thiolase_N Thiolase, N-terminal domain 5.2e-43 145.5 0.8 9.8e-43 144.6 0.2 1.8 2 Thiolase_C Thiolase, C-terminal domain 8.8e-05 22.1 1.3 0.00039 20.0 0.6 2.1 3 ketoacyl-synt Beta-ketoacyl synthase, N-terminal domain ------ inclusion threshold ------ 0.14 12.2 0.0 0.38 10.8 0.0 1.7 1 DUF2802 Protein of unknown function (DUF2802) Domain annotation for each model (and alignments): >> Thiolase_N Thiolase, N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 313.8 0.3 1.8e-97 7.4e-94 1 260 [] 4 263 .. 4 263 .. 1.00 2 ? -2.6 0.0 0.64 2.7e+03 6 156 .. 296 326 .. 294 343 .. 0.54 Alignments for each domain: == domain 1 score: 313.8 bits; conditional E-value: 1.8e-97 EEEEEEEEE--EETTSTTTTS-HHHHHHHHHHHHHHHHTS-GGGEEEEEEE-SSBTTSTSCHHHHHHHHTTS-TTSEEEEEE- CS Thiolase_N 1 vvivsaartpigkfggslkdlsaeeLlaealkallekagvdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnk 83 v++v+a+r++ig+f g l+ l+ +L+a+++k++le+++vdp+++devivGnvl+ag+ q + rq+a++agip+evpa vn 23726_FusoPortal_Gene_1893 4 VYVVAAKRSAIGSFLGTLSPLKPGDLGAQIVKNILEETKVDPANIDEVIVGNVLSAGQAQGVGRQVAIRAGIPYEVPAYSVNI 86 89********************************************************************************* PP GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEESTTS-EEETCTTTTGGSSSSEEEEEHHHHHHTEETTTTSEHHHHHHHHHHHH CS Thiolase_N 84 vcsSglkavalaaqsiaageadvvvagGvEsmsnaptaestdvrsglklgdekakdllipdgladafneehmGltaenlakky 166 +c+Sg+k+v++a +i+agead v+agG+Esms a + ++r g+k+ d ++kd++i d+l+da++++hmG+taen+a++y 23726_FusoPortal_Gene_1893 87 ICGSGMKSVITAFSNIKAGEADLVIAGGTESMSGAGFILPGAIRGGHKMADLTMKDHMILDALTDAYHNIHMGITAENIAERY 169 *********************************************************************************** PP T--HHHHHHHHHHHHHHHHHHHHTTTTTTTBE-EEEEESSSEEEE-S-TTS-TT--HHHHHTS-BSSSTTSS-BTTSB--BEE CS Thiolase_N 167 kisReeqdefAvkshqkaaaaqkagkFkdeivPvkvkgkkgkktvdkdeairsevtaekLaklkpaFkkeGtvtAgnasqisD 249 +i+Reeqd+fA+ s+ ka aa ++g+Fkdei Pv +++kkg+ ++d+de++++++ aekLaklkpaFkk+G+vtAgnas+++D 23726_FusoPortal_Gene_1893 170 GITREEQDAFALDSQLKAIAAVDSGRFKDEIAPVVIPNKKGDIIFDTDEYPNRKTDAEKLAKLKPAFKKDGSVTAGNASGLND 252 *********************************************************************************** PP EEEEEEEEEHH CS Thiolase_N 250 Gaaavllmses 260 Ga+ ++l+se+ 23726_FusoPortal_Gene_1893 253 GASFLMLASEE 263 ********986 PP == domain 2 score: -2.6 bits; conditional E-value: 0.64 EEEE--EETTSTTTTS-HHHHHHHHHHHHHHHHTS-GGGEEEEEEE-SSBTTSTSCHHHHHHHHTTS-TTSEEEEEE-GGGHH CS Thiolase_N 6 aartpigkfggslkdlsaeeLlaealkallekagvdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSg 88 a r ++ k lkd++ eL +++ 23726_FusoPortal_Gene_1893 296 AIRKAFNKTDLKLKDMELIELNEAF---------------------------------------------------------- 320 4555555555555555555555544.......................................................... PP HHHHHHHHHHHHTTS-SEEEEEEEEESTTS-EEETCTTTTGGSSSSEEEEEHHHHHHTEETTTTSEHH CS Thiolase_N 89 lkavalaaqsiaageadvvvagGvEsmsnaptaestdvrsglklgdekakdllipdgladafneehmG 156 + +G 23726_FusoPortal_Gene_1893 321 --------------------------------------------------------------AAQSLG 326 ..............................................................444444 PP >> Thiolase_C Thiolase, C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.6 0.0 1.8 7.6e+03 32 52 .. 38 53 .. 29 71 .. 0.48 2 ! 144.6 0.2 2.4e-46 9.8e-43 1 122 [. 270 399 .. 270 400 .. 0.97 Alignments for each domain: == domain 1 score: -3.6 bits; conditional E-value: 1.8 HHHHT--GGGESEEEE--SBH CS Thiolase_C 32 lkkagltvedidlfEinEAFa 52 l+++ ++d i+E 23726_FusoPortal_Gene_1893 38 LEET-----KVDPANIDEVIV 53 3333.....333333333333 PP == domain 2 score: 144.6 bits; conditional E-value: 2.4e-46 ---SEEEEEEEEEE--GGGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--G........GGBSTT--H CS Thiolase_C 1 lkplakirsyaevgvdpeilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldl........ekvNvnGGa 75 lkpl++i++ + gvdp +g+gP++ai+k+ +k+ l+++d++l+E+nEAFaaq L v+k+l + e++NvnGGa 23726_FusoPortal_Gene_1893 270 LKPLVEIVATGTGGVDPLVMGMGPVPAIRKAFNKTDLKLKDMELIELNEAFAAQSLGVIKELCKEHgvtpewikERTNVNGGA 352 5899*********************************************************9888888999999********* PP HHH-B-TTTHHHHHHHHHHHHHHHCTTSEEEEEEEETTTEEEEEEEE CS Thiolase_C 76 ialGHPlGasGaRivvtllselkkeggklgvaalCigggqgvalvie 122 ialGHP+GasG Ri+vtl++e+kk+g ++g+a+lCiggg+g+al+++ 23726_FusoPortal_Gene_1893 353 IALGHPVGASGNRITVTLIYEMKKRGVEYGLASLCIGGGMGTALILK 399 ********************************************986 PP >> ketoacyl-synt Beta-ketoacyl synthase, N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.0 0.53 2.2e+03 94 124 .. 32 62 .. 27 74 .. 0.80 2 ! 20.0 0.6 9.3e-08 0.00039 167 207 .. 80 120 .. 68 136 .. 0.89 3 ? -2.3 0.0 0.57 2.4e+03 65 107 .. 232 272 .. 211 282 .. 0.61 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 0.53 HHHHHHHHHHTS-HHTCTTGGEEEEEEESST CS ketoacyl-synt 94 eaawealedagltpeeldgsrvgvfiGvgag 124 + +++ le+ +++p+++d+ vg+++ +g + 23726_FusoPortal_Gene_1893 32 QIVKNILEETKVDPANIDEVIVGNVLSAGQA 62 6678999999999999999889988877765 PP == domain 2 score: 20.0 bits; conditional E-value: 9.3e-08 SEEEEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE---S CS ketoacyl-synt 167 psvtvdtACsSslvavhaavqslrsgeadvalaGGvelllt 207 p+++v C S+ + v a +++++gead+++aGG+e + + 23726_FusoPortal_Gene_1893 80 PAYSVNIICGSGMKSVITAFSNIKAGEADLVIAGGTESMSG 120 88999999****99999999*****************8866 PP == domain 3 score: -2.3 bits; conditional E-value: 0.57 .S.TTEGGTTSTHHHHHHHCTS-HHHHHHHHHHHHHHHHHTS-H CS ketoacyl-synt 65 ld.vddfdpeffgispreaeamdpqqrllleaawealedagltp 107 l+ +++ d ++ +++ ++ + +l+ a++ea+++++l+p 23726_FusoPortal_Gene_1893 232 LKpAFKKDGSVTAGNAS---GLNDGASFLMLASEEAVKKYNLKP 272 34455555555555555...667777777777888877777766 PP >> DUF2802 Protein of unknown function (DUF2802) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.8 0.0 9e-05 0.38 36 59 .. 152 175 .. 148 177 .. 0.90 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 9e-05 DUF2802 36 AiklvrqGasveelaeecgLsraE 59 A +++G ++e +ae+ g++r+E 23726_FusoPortal_Gene_1893 152 AYHNIHMGITAENIAERYGITREE 175 56669*****************99 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (403 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 493 (0.0294998); expected 334.2 (0.02) Passed bias filter: 434 (0.0259694); expected 334.2 (0.02) Passed Vit filter: 37 (0.00221398); expected 16.7 (0.001) Passed Fwd filter: 4 (0.000239349); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.28u 0.23s 00:00:00.51 Elapsed: 00:00:00.32 # Mc/sec: 3661.04 // [ok]