# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1907.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1907 [L=82] Description: # 2049870 # 2050115 # -1 # ID=1_1907;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.301 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-31 107.3 0.5 3.6e-31 107.1 0.5 1.0 1 Ribosomal_L31 Ribosomal protein L31 Domain annotation for each model (and alignments): >> Ribosomal_L31 Ribosomal protein L31 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 107.1 0.5 2.1e-35 3.6e-31 1 67 [] 1 77 [. 1 77 [. 0.99 Alignments for each domain: == domain 1 score: 107.1 bits; conditional E-value: 2.1e-35 Ribosomal_L31 1 mKkgiHPeyrevvvkcacgeefltrStl..........kekpeikvdvcsksHPfYtGkqklvdtaGrvekFkkryg 67 mKkgiHPe+ vv+++++g++fltrSt ke+p+ikv v+sksHPfYtG+q++vdtaGrv+kF+k+++ 23726_FusoPortal_Gene_1907 1 MKKGIHPEFDLVVFEDMAGNQFLTRSTKipketttfegKEYPVIKVAVSSKSHPFYTGEQRFVDTAGRVDKFNKKFN 77 9***************************************************************************6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (82 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 368 (0.0220201); expected 334.2 (0.02) Passed bias filter: 306 (0.0183102); expected 334.2 (0.02) Passed Vit filter: 13 (0.000777884); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.23u 0.24s 00:00:00.47 Elapsed: 00:00:00.33 # Mc/sec: 722.35 // [ok]