# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1915.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1915 [L=1005] Description: # 2056432 # 2059446 # -1 # ID=1_1915;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.259 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-220 734.5 31.9 1.9e-220 734.3 31.9 1.0 1 ACR_tran AcrB/AcrD/AcrF family 1.5e-13 50.3 5.2 5.8e-09 35.2 0.1 2.3 2 MMPL MMPL family ------ inclusion threshold ------ 0.033 13.3 0.0 0.068 12.3 0.0 1.4 1 HAP1_N HAP1 N-terminal conserved region 0.44 9.9 5.9 0.13 11.7 1.0 2.8 2 DUF3087 Protein of unknown function (DUF3087) Domain annotation for each model (and alignments): >> ACR_tran AcrB/AcrD/AcrF family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 734.3 31.9 4.4e-224 1.9e-220 2 1020 .. 4 996 .. 3 997 .. 0.95 Alignments for each domain: == domain 1 score: 734.3 bits; conditional E-value: 4.4e-224 HHHHHTSHHHHHHHHHHHHHHHHHHHCTSSBESSSS-S--EEEEEEE-TTC-HHHHHHHTHHHHHCTCTS-TTEEEEEEEE CS ACR_tran 2 ikffikrpifalvlaliilllGilsilslPvdalPeiapptvqvstsypGaspevvesevtqplEqalngldglkyvsSqS 82 ik++ikr i+++++++ +l+lGi++++s+ + lP+i++p v++ t+ +Gas+ ve+++t+++E+ l ++g++++sS+S 23726_FusoPortal_Gene_1915 4 IKIAIKRTIVTTMISISLLILGIFAMKSMRTELLPDIEYPVVKIITHWSGASAADVEKQITNKIERILPNVEGIENISSES 84 799****************************************************************************** PP TTSEEEEEEEESTTS-HHHHHHHHHHHHHHHGGGS-HHHHHH-EEEEEEECCECEE.EEEEESSSSS-HHHHHHHHHHHTH CS ACR_tran 83 seglssitltFedgtdidiArqqvqnrlqeaknkLPeevqepgiskiktssseilv.lavtskdgsltktelrdlaetnik 162 s+ +ssi+++F+ g +i+ ++q ++ ++kn+LP+ +++p i+k++ + ++i l+++s+ +k+ l ++e+ +k 23726_FusoPortal_Gene_1915 85 SYENSSISVEFNYGVNIQDKVTEIQREVFQIKNDLPNSAKNPIIKKTEVGAGAITLfLTFVSP----DKKALFSYLENYVK 161 *************************************************99998651688898....999*********** PP HHHHTSTTEEEEEESS.-SEEEEEEE-HHHHHCTT--HHHHHHHHHHHSSB-EEEEETT-SB-EEEE-SB---SHHHHHTS CS ACR_tran 163 dqLsrveGVgdvqliGgsekavriwldpqklaklgltltdvvsalkeqnvnvaaGqlegqeeelliraqgqlqsaedieki 243 ++L+ ++GV++v + Gg +k+++i ++p+kla+++lt+ d+ + +++ ++ G+l + ee+ i+a g+l+s+e++e+i 23726_FusoPortal_Gene_1915 162 PNLETISGVAEVSILGGTKKQLQIQIEPAKLASYNLTPMDIYQLIRKSSMVIPLGSLMNGREEYVIQALGELESVEEYENI 242 ********************************************************************************* PP EEEETTSCEEEHHHCEEEEEEESSSSSEEEETTEEEEEEEEEEETTSBHHHHHHHHHHHHHCCGGGSSTTEEEEEEEESHH CS ACR_tran 244 ivknqdgskvrlrDvAkVelgaeeerlaatfngkpavllevkklpganaievakavkekleeLkeslPegveivvvydrte 324 ++ +++g +rl+D+A+V l +e+ + + +gkpa+ +++ k ++ +ie+ +++ +++++++e++P+++ + ++d +e 23726_FusoPortal_Gene_1915 243 LL-HSNGDTLRLKDIANVVLTEEDPLNLGFNRGKPATTIAISKSSDGSTIEINEKIMKAIKNMEETMPSNITYFKIFDSSE 322 **.99**************************************************************************** PP HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT--BCHHHHHHHHHHHHHHHHHHHHH CS ACR_tran 325 fvrasieeVvktLleaivLvvlvvflFLqnlratlipaiavPlsllgtfavlkalgfslNlltLfgLvlAiGlvvDdAiVv 405 +++si++V k+ l +++L+ l +++F +n + tli+ a Pl++ tf+++k + + Nl++L+gL++++G++ D+++Vv 23726_FusoPortal_Gene_1915 323 SIKKSINTVGKSALQGLILASLFLWIFFKNKKMTLIVSFAFPLAISTTFILMKGIHSTFNLISLMGLAIGVGMLTDNSVVV 403 ********************************************************************************* PP HHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH CS ACR_tran 406 vEnierkleeegekpleaalksmkeiqgalvaialvllavflPilflgGveGklfrqfaltivlaillsvlvaltltPalc 486 + ni+ +++e +++ eaa+ +++++ ++++a++++ ++vflPi+f +G+ ++f+++ +i+++ ++++lv++t++P+l+ 23726_FusoPortal_Gene_1915 404 IDNIYNHIQE-EKNSIEAAFIGTNQVFSSVLASTMTSIIVFLPIIFTKGIFKEMFQDMVWAIIFSNVAALLVSVTFIPMLA 483 **********.8889****************************************************************** PP HHHS----TT-CTSHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHH.HHHHTS-BESS----TSEEEEEEE CS ACR_tran 487 allLkerkeekekkffrefnrlfealeraYakllekvlrhravvllvalvllvlsv.llfvripkeflPeedegvlvtsvq 566 + ++k++ + e + f++++r+Y+++l+++l+h+++++l+ l++ l + + ++ fl ++d g+ +++++ 23726_FusoPortal_Gene_1915 484 SKFMKKNIIQTE-------GKYFSKIQRKYQRFLSISLKHKKKTVLISLLFAFLIFgIGGKFVKFGFLTKQDYGYYSVIAE 557 *******99998.......799******************99988887776666551555678889*************** PP -STTC-HHHHHHHHHHHHHHHHTTTTEEEEEEEECEESSE..ECCCEEEEEEEES-GCGS-SGGGSHHHHHHHHHHHCTTS CS ACR_tran 567 lppgvsleqtqkvlkqvekilkekpevesvfavtGfaesgdtagpnsakvfisLkpekerkeeeksvealierlrkelkki 647 +++g+ +e+ q++ +++e+i+k++p+++s f+ +g s +v + +k + ++s +++++++rke++ki 23726_FusoPortal_Gene_1915 558 FQNGSDFEKIQELRNEIETIIKKEPHTKSYFSIIQK-----RNGTISVNVDVGFKEKR-----KESIFEIVKKVRKEVEKI 628 *******************************88753.....46788899999999876.....67**************** PP TSSEEEEEETTSSCCCSSSSCEEEEEEE.SSSSHHHHHHHHHHHHHHHHCCSTTEEEEEESS-S-EEEEEEEE-HHHHHHC CS ACR_tran 648 pganvellapiqlreletlsgvrselqvklfgddleaLseaaeqllaalkelpelsdvrseqqedqpqlqveidrekaarl 728 p+++ ++ + + +++++++g+dle+++ +a+q+ + + ++++++dv+s+ +++ ++l++ r+k+++l 23726_FusoPortal_Gene_1915 629 PDIRTTFFYEYA----KGKPKK--DIEFQIVGTDLETIQILARQIYKDVLKIKGVTDVSSTLDSGGKKLEIIFKRDKIQSL 703 ****77765332....233455..555556*************************************************** PP TBSHHHHHHHHHHHH.TTEEEEE..EEETTEEEEEEEEE-GGGSSSGGGGCC-EEEETTSCEEEGGGTEEEEEEEE-SEEE CS ACR_tran 729 Gvsisdindtletal.ggsyvnd..fieegrrvkvvvrleedlrsspedlkklkvrnkkgkmvplsavakieeekgpnsie 806 +si++i++t++ +l gg +n+ ++ ++++++v vrl +d+r+s+++l++lk++ ++ ++ ls++a i++ + si 23726_FusoPortal_Gene_1915 704 NMSIKQIEETISYYLlGGDRANTitIKSGNEEIEVLVRLSKDNRKSIKQLENLKIKVTDNSFINLSEIADIRKVENQLSID 784 ***********99853777777611578899************************************************** PP EETTCEEEEEEEEESTTS-HHHHHHHHHHHCTT..SSTTEEEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTSSS CS ACR_tran 807 rengsrsvvisgnvaegdslseaeeavekiakkvklpegvtiewtgqaeqeqeasnsllilvalalllvflvLaalyesls 887 ++n++ sv i n g + +++++ ki ++ + ++++++w+g ae+ q+a+++l++ + +a++l++ +La ++es++ 23726_FusoPortal_Gene_1915 785 KINRFYSVSIYVN-DGGIGTQKIQQELVKIFSEKNKDSSIQYRWGGDAEKMQRAMKELMLTFLIAIFLIYALLASQFESFL 864 *******999877.45666778888888888887889******************************************** PP TCHHHHTTHHHHHHHHHHHHHHTT--BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHCHHHHHH CS ACR_tran 888 epllilltvPlalvGallalllrglelsviaqvGlilliGlavkNaillvefakelrekegksleeaileaakeRLrPiLM 968 p+l++ ++P++lvG +++ l+++ +l+ +a+vG++lliG++v+Nai+l++f++++++ e k+ +eai +a+ RLrPiL+ 23726_FusoPortal_Gene_1915 865 FPFLVMGSIPFSLVGVIIGFLITQHTLDAVAMVGIVLLIGIVVNNAIVLLDFIQQKEK-ESKNKKEAIEKACNLRLRPILL 944 ********************************************************99.9999****************** PP HHHHHHHHHHHHHTT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS ACR_tran 969 TalaailGvlPLalstgaGselqqplgivvlgGlvtstvLtLllvPvlYvlv 1020 T+l++i+G++PL l+ g+Gse+ q lgi ++ G+ st+LtL +vP Y+++ 23726_FusoPortal_Gene_1915 945 TSLTTIVGMIPLSLGIGDGSEVYQGLGISIIFGMSFSTLLTLIFVPTTYYML 996 *************************************************986 PP >> MMPL MMPL family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.2 1.6 8.6e-07 0.0036 178 300 .. 358 484 .. 354 508 .. 0.78 2 ! 35.2 0.1 1.4e-12 5.8e-09 31 297 .. 717 991 .. 697 1001 .. 0.77 Alignments for each domain: == domain 1 score: 16.2 bits; conditional E-value: 8.6e-07 MMPL 178 vvsllaalglvlilalllglelstfvlgllvvlliavG....tDYallLvsRyreelaagedreeaviravastgkvvtaaGl 256 +vs++ l++ + ++l+ +++ ++++l +++++a+G tD + ++ + +++++++ ea+ +++ + v+a+++ 23726_FusoPortal_Gene_1915 358 IVSFAFPLAI--STTFILMKGIH-STFNLISLMGLAIGvgmlTDNSVVVIDNIYNHIQEEKNSIEAAFIGTNQVFSSVLASTM 437 3444444444..33444444444.4444444444443322558**************************************** PP MMPL 257 tvaiamlgLvvar...lpvlaqvGvaialGvlvdvlivlTllPAllv 300 t +i +l +++ ++++ + ai + + ++l+++T++P l++ 23726_FusoPortal_Gene_1915 438 TSIIVFLPIIFTKgifKEMFQDMVWAIIFSNVAALLVSVTFIPMLAS 484 ***********99444489************************9986 PP == domain 2 score: 35.2 bits; conditional E-value: 1.4e-12 MMPL 31 vvvlaegdealgsaaaeaavdelvdelkkdtkhvgevsdf..............lsdpdvaaafvSkDgkaaralvtlegdpg 99 +++ + ++++++ ++ ++ ++ lv+ k++ k ++++ ++ ++d ++ +S D+ + v++ + g 23726_FusoPortal_Gene_1915 717 YLLGGDRANTITIKSGNEEIEVLVRLSKDNRKSIKQLENLkikvtdnsfinlseIADIRKVENQLSIDKINRFYSVSIYVNDG 799 45555666666666666666666666666666666666666666666655544434444666667777777777777777777 PP MMPL 100 steadesvaairaaveearpleglkvevtGpaatladlrdasdrdlklievvtlvvilviLlivyrSlvaallplltvvvsll 182 +++ +++ ++ +e +++++ + +G a ++ ++++l+l+ ++++ +i ++L+ + S++ ++l+++++ +sl+ 23726_FusoPortal_Gene_1915 800 GIGTQKIQQELVKIFSEKNKDSSIQYRWGGDAEKMQR----AMKELMLTFLIAIFLIYALLASQFESFLFPFLVMGSIPFSLV 878 7777777777777777777788888888887766666....8999************************************96 PP MMPL 183 aalglvlilalllglelstfvlgllvvlliavGtDYallLvsRyreelaagedreeaviravastgkvvtaaGltvaiamlgL 265 + li++++ ++v++ +vlli++ + a+ L+ ++++ ++ ++++ea+ +a + + ++ lt ++ m+ L 23726_FusoPortal_Gene_1915 879 GVIIGFLITQHT-----LDAVAMVGIVLLIGIVVNNAIVLLDFIQQKEKESKNKKEAIEKACNLRLRPILLTSLTTIVGMIPL 956 443334677776.....467889999********************************************************9 PP MMPL 266 vv...arlpvlaqvGvaialGvlvdvlivlTllPA 297 ++ +v +++G+ i G+ +++l++l ++P 23726_FusoPortal_Gene_1915 957 SLgigDGSEVYQGLGISIIFGMSFSTLLTLIFVPT 991 983334799*********************99996 PP >> HAP1_N HAP1 N-terminal conserved region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.0 1.6e-05 0.068 34 75 .. 700 743 .. 682 752 .. 0.85 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 1.6e-05 HAP1_N 34 evseelsaeqieetleYflLcservsqvt.k.tyeDievvtrLL 75 +s ++s +qieet +Y+lL+++r + +t k e+iev++rL 23726_FusoPortal_Gene_1915 700 IQSLNMSIKQIEETISYYLLGGDRANTITiKsGNEEIEVLVRLS 743 56788999******************9984467899***99985 PP >> DUF3087 Protein of unknown function (DUF3087) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.9 0.3 1.8 7.7e+03 41 69 .. 457 485 .. 432 509 .. 0.54 2 ? 11.7 1.0 3e-05 0.13 15 68 .. 839 892 .. 830 896 .. 0.83 Alignments for each domain: == domain 1 score: -3.9 bits; conditional E-value: 1.8 DUF3087 41 fgeeevsnfhlnllGvvlalvltaailrk 69 f++ + + n++ ++++ + ++ +k 23726_FusoPortal_Gene_1915 457 FQDMVWAIIFSNVAALLVSVTFIPMLASK 485 44444444444555555555555555555 PP == domain 2 score: 11.7 bits; conditional E-value: 3e-05 DUF3087 15 lnrvivalvallavlsllfstllialfgeeevsnfhlnllGvvlalvltaailr 68 + l+a++++ +ll s+ lf+ + ++ + l+Gv++++++t l 23726_FusoPortal_Gene_1915 839 KELMLTFLIAIFLIYALLASQFESFLFPFLVMGSIPFSLVGVIIGFLITQHTLD 892 34455667999*****************99999***************988776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1005 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1609 (0.0962781); expected 334.2 (0.02) Passed bias filter: 525 (0.0314146); expected 334.2 (0.02) Passed Vit filter: 44 (0.00263284); expected 16.7 (0.001) Passed Fwd filter: 8 (0.000478698); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.35 # Mc/sec: 8347.33 // [ok]