# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1921.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1921 [L=203] Description: # 2064156 # 2064764 # -1 # ID=1_1921;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.274 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4e-67 225.5 0.2 4.4e-67 225.4 0.2 1.0 1 CutC CutC family ------ inclusion threshold ------ 0.14 11.8 0.5 1.8 8.2 0.1 2.3 2 QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal Domain annotation for each model (and alignments): >> CutC CutC family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 225.4 0.2 5.2e-71 4.4e-67 1 199 [. 1 199 [. 1 202 [. 0.99 Alignments for each domain: == domain 1 score: 225.4 bits; conditional E-value: 5.2e-71 CutC 1 vllEvcveniesllaaqaagadRvELCaalavgGltPslgvlkeaaeeakipvyvmiRPRgGdFvysdeelkamleDieaare 83 +++E cve++e++l+aq++ga+R+ELC++l+vgG+tPs+g++k e+ +i++++m+R RgG+Fvys++e+++m+eDi+ ++ 23726_FusoPortal_Gene_1921 1 MIKEACVESFEKALEAQNNGANRIELCENLSVGGTTPSYGTVKICLEKLNISIFPMVRARGGNFVYSKDEIEIMKEDIKIFKK 83 689******************************************************************************** PP CutC 84 lgldgvvlGaltadgeiDlkaleklieaaegLgvtfHrAfDvvadpeealeqlielgvervLtsGqkssalegleklaeLveq 166 lg++gvvlG+lt+d++iDl+ +++l+ a +++vtfH+A+D++ +p ++ l+++g++r+LtsG+k+ aleg + ++e++++ 23726_FusoPortal_Gene_1921 84 LGVKGVVLGCLTSDNKIDLELTKELVDLAYPMEVTFHKAIDEILNPLDYIDGLVNIGIKRILTSGGKATALEGKDLINEMIKK 166 *********************************************************************************** PP CutC 167 aaerieimagaGvnaenvaelakktGvaevHls 199 +++r++i+ ++ v+ en+++l++ + e+H+ 23726_FusoPortal_Gene_1921 167 SNGRLKIVVAGKVTKENLNDLSNLISADEFHGK 199 *******************************85 PP >> QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.8 0.0 0.02 1.7e+02 136 168 .. 73 104 .. 4 105 .. 0.79 2 ? 8.2 0.1 0.00021 1.8 119 145 .. 162 188 .. 150 193 .. 0.83 Alignments for each domain: == domain 1 score: 1.8 bits; conditional E-value: 0.02 --TTTHHHHHCTT-SEEEECHHCHTB----EEE CS QRPTase_C 136 vtlenveeyaksgvdvisvgalthsvkalDisl 168 + +e+++ ++k gv+ + +g lt+ + +D++l 23726_FusoPortal_Gene_1921 73 IMKEDIKIFKKLGVKGVVLGCLTSD-NKIDLEL 104 6789999999999999999999876.4467665 PP == domain 2 score: 8.2 bits; conditional E-value: 0.00021 HHHHHHSTTSEEEEESS--TTTHHHHH CS QRPTase_C 119 eelkeknkrvlievSGgvtlenveeya 145 e++k+ n+r++i v+G vt+en++++ 23726_FusoPortal_Gene_1921 162 EMIKKSNGRLKIVVAGKVTKENLNDLS 188 455999*****************9986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (203 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 525 (0.0314146); expected 334.2 (0.02) Passed bias filter: 444 (0.0265677); expected 334.2 (0.02) Passed Vit filter: 32 (0.00191479); expected 16.7 (0.001) Passed Fwd filter: 2 (0.000119674); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.23u 0.23s 00:00:00.46 Elapsed: 00:00:00.30 # Mc/sec: 1967.09 // [ok]