# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1923.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1923 [L=119] Description: # 2065470 # 2065826 # -1 # ID=1_1923;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.232 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.2e-28 96.1 8.3 1.1e-27 95.7 8.3 1.2 1 LrgA LrgA family ------ inclusion threshold ------ 0.084 12.7 0.2 0.11 12.3 0.2 1.2 1 DUF656 Family of unknown function (DUF656) Domain annotation for each model (and alignments): >> LrgA LrgA family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 95.7 8.3 1.3e-31 1.1e-27 2 94 .] 13 105 .. 12 105 .. 0.98 Alignments for each domain: == domain 1 score: 95.7 bits; conditional E-value: 1.3e-31 LrgA 2 llGellsrllplpiPgsviGlllLlllLltkivklekveeaadfllkhlallFvPagvgvmeyldllkaellailvalvvstl 84 ++G l+s++l++p+Pg++ +lllL+llL++k++klek+e+aa+fll +++l+F+P++v ++++++ll+++l++i+v++vvst+ 23726_FusoPortal_Gene_1923 13 YVGILISSILHFPLPGTITALLLLFLLLQLKVLKLEKIENAANFLLLNMTLFFMPPTVKIIDSYHLLEKDLFKIIVIIVVSTF 95 5899******************************************************************************* PP LrgA 85 lvlvvtglvv 94 +++ +tg vv 23726_FusoPortal_Gene_1923 96 ITMGITGKVV 105 *******985 PP >> DUF656 Family of unknown function (DUF656) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.2 1.4e-05 0.11 32 98 .. 49 116 .. 41 118 .. 0.78 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 1.4e-05 DUF656 32 rieigplgvllnlnmlfhmsrvrhidvypyln.nimsisvsldvpvssgvgvgrvrvlifttsrervg 98 +ie + +lln+ ++f v+ id y l+ +++ i v + v +g+ v ++ re+ g 23726_FusoPortal_Gene_1923 49 KIENAANFLLLNMTLFFMPPTVKIIDSYHLLEkDLFKIIVIIVVSTFITMGITGKVVQVMIDYREKKG 116 67777777899999999999*********997357889998888888888887666777777787766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (119 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 821 (0.0491264); expected 334.2 (0.02) Passed bias filter: 272 (0.0162757); expected 334.2 (0.02) Passed Vit filter: 27 (0.00161561); expected 16.7 (0.001) Passed Fwd filter: 3 (0.000179512); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.22u 0.23s 00:00:00.45 Elapsed: 00:00:00.31 # Mc/sec: 1115.93 // [ok]