# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1953.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1953 [L=1059] Description: # 2098930 # 2102106 # -1 # ID=1_1953;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.300 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.4e-118 391.5 0.0 7.1e-78 260.8 0.0 2.3 2 CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP bi 2.9e-42 143.7 0.3 1.1e-41 141.9 0.3 2.1 1 CPSase_L_D3 Carbamoyl-phosphate synthetase large chain, 2.5e-25 88.8 0.0 6.8e-11 41.4 0.0 3.7 3 ATPgrasp_Ter ATP-grasp in the biosynthetic pathway with T 2.5e-18 66.3 0.1 3.5e-09 36.4 0.0 2.5 2 Dala_Dala_lig_C D-ala D-ala ligase C-terminus 5.8e-18 64.8 0.3 5.9e-17 61.5 0.0 3.0 3 MGS MGS-like domain 4.3e-16 59.3 0.3 1.9e-09 37.6 0.0 2.4 2 ATP-grasp_3 ATP-grasp domain 1.8e-14 53.6 0.0 1.3e-06 28.0 0.0 2.4 2 ATP-grasp ATP-grasp domain 1.5e-08 34.6 0.0 0.0015 18.2 0.0 2.7 2 GARS_A Phosphoribosylglycinamide synthetase, ATP-gr 1.4e-06 27.9 0.9 0.00056 19.4 0.1 3.3 3 ATP-grasp_4 ATP-grasp domain ------ inclusion threshold ------ 0.057 12.8 0.0 4.9 6.5 0.0 2.4 2 ATP-grasp_5 ATP-grasp domain Domain annotation for each model (and alignments): >> CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 260.8 0.0 4.2e-81 7.1e-78 1 210 [. 128 333 .. 128 334 .. 0.99 2 ! 128.6 0.0 1.3e-40 2.1e-37 1 209 [. 666 866 .. 666 868 .. 0.94 Alignments for each domain: == domain 1 score: 260.8 bits; conditional E-value: 4.2e-81 SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-E CS CPSase_L_D2 1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqv 83 D+e ++++++++n+pv +s+++ +tleea +++kei yPvi+++af++GG+G+++++nee+l+e+v ++l+ ++ +q+ 23726_FusoPortal_Gene_1953 128 DRELFRDLMNELNEPVPDSAIV--HTLEEAENFVKEIDYPVIVRPAFTMGGTGGGICYNEEDLHEIVPNGLNYSP----VHQC 204 9******************999..**************************************************7....9*** PP EEEE--SSSEEEEEEEEEETTS-EEEEEEEEECCEC..TCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEE CS CPSase_L_D2 84 lvekslkgpkeiEvevlrDakgnvitvcerenslql..rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtvefll 164 l+eks++g+keiE+ev+rD+++++i+vc++en++++ +t+++i+vAPsqtLtd+e+++lr ++k++r+++++g+++v+ +l 23726_FusoPortal_Gene_1953 205 LLEKSIAGYKEIEYEVMRDSNDTAIVVCNMENIDPVgiHTGDSIVVAPSQTLTDREHHMLRDVSLKIIRALKIEGGCNVQIAL 287 *********************************************************************************** PP ETTTTEEEEEEEESS--CCHHHHHHHHS--HHHHHHHHHTT--GCG CS CPSase_L_D2 165 dpkskeyyviEvNtRlsvesalaekaTGldlvkeaakialgekLee 210 dp+s +yy+iEvN+R+s++sala+kaTG++++k+aakia+g++L+e 23726_FusoPortal_Gene_1953 288 DPNSFKYYIIEVNPRVSRSSALASKATGYPIAKIAAKIAVGMTLDE 333 ********************************************97 PP == domain 2 score: 128.6 bits; conditional E-value: 1.3e-40 SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-E CS CPSase_L_D2 1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqv 83 D+++++++l +++p +++a ++e+al+ a+eigyPv++++++ lGG+ m +++n+e+l++ ++ka++ + ++ v 23726_FusoPortal_Gene_1953 666 DRDRFEKLLIGLKIPQPLGKTA--FDVETALKNANEIGYPVLVRPSYVLGGRAMEIVYNDEDLTKYMEKAVHINP----DHPV 742 8999999999999999889888..9*************************************************6....9*** PP EEEE--SSSEEEEEEEEEETTS-EEEEEEEEECCEC..TCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEE CS CPSase_L_D2 84 lvekslkgpkeiEvevlrDakgnvitvcerenslql..rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtvefll 164 l++++l g keiEv+ ++D +++ i + +e + + +++i + P q L+++e ++l + k+++ ++v+g ++++++ 23726_FusoPortal_Gene_1953 743 LIDRYLIG-KEIEVDAISDGENTFI-PGIMEHIERAgvHSGDSISIYPPQSLSEKEIETLIDYTKKLASGLEVKGLINIQYVV 823 ******98.9*********987766.577888777677********************************************* PP ETTTTEEEEEEEESS--CCHHHHHHHHS--HHHHHHHHHTT--GC CS CPSase_L_D2 165 dpkskeyyviEvNtRlsvesalaekaTGldlvkeaakialgekLe 209 + ++e+yv+EvN+R s+ + +k+TG++++++a++ lg+kL+ 23726_FusoPortal_Gene_1953 824 S--KGEIYVLEVNPRASRTVPFLSKVTGVPVANIAMQCILGKKLK 866 *..5***************************************98 PP >> CPSase_L_D3 Carbamoyl-phosphate synthetase large chain, oligomerisation domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 141.9 0.3 6.4e-45 1.1e-41 2 123 .] 423 540 .. 422 540 .. 0.95 Alignments for each domain: == domain 1 score: 141.9 bits; conditional E-value: 6.4e-45 CPSase_L_D3 2 elkrptdeRifaiaealrrglsveeiheltkidpwFLekleelvelekelkkkkkeldeellreakklGfsDkqiaelleeee 84 ++k + deR+f i ealrr++s+eeihe tkid +FL+k++++++le+ lk++k + ellr++k GfsD+ ia+ +e 23726_FusoPortal_Gene_1953 423 RIKLAGDERLFFIGEALRRDVSIEEIHEYTKIDLFFLNKMKNIIDLEHLLKDNK--GNIELLRKVKTFGFSDRVIAHRWEM-- 501 5677889********************************************997..899*****************99855.. PP CPSase_L_D3 85 eeeevrelrkklgilpvykrvDtcAaeFeaetpYlYstY 123 +e+e++elr+k++i+pvyk+vDtcAaeF+++tpY+YstY 23726_FusoPortal_Gene_1953 502 TETEITELRHKHNIRPVYKMVDTCAAEFDSNTPYFYSTY 540 6778**********************************9 PP >> ATPgrasp_Ter ATP-grasp in the biosynthetic pathway with Ter operon # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.4 0.0 5.7e-09 9.6e-06 26 165 .. 41 178 .. 28 195 .. 0.85 2 ! 18.1 0.0 5e-07 0.00083 246 321 .. 261 338 .. 252 349 .. 0.80 3 ! 41.4 0.0 4e-14 6.8e-11 41 318 .. 602 869 .. 573 883 .. 0.80 Alignments for each domain: == domain 1 score: 24.4 bits; conditional E-value: 5.7e-09 ATPgrasp_Ter 26 kftviashrdersei..leaADealtePsglegeeyvefvldfckkheidvflpgr......ellllaarreeFeaaGvrllv 100 ++vi +++ +++ +e+AD++++eP vef+ ++++k++ d++lp+ +l+ + + + Gv++l 23726_FusoPortal_Gene_1953 41 GYEVILVNSNPATIMtdKEIADKVYIEPL------TVEFLSKIIRKEKPDALLPTLggqvalNLAVSLHESGILDECGVEILG 117 56777777777777722589*********......89*****************99666554555555555667777****99 PP ATPgrasp_Ter 101 gaasetlellddKvafyaaaeakglpvpeaelvttaeeleaalaklrasgeklcvKPavgiggrG 165 + ++++++d f + +++ + pvp++ +v t+ee e+ +++++ + ++v Pa gg G 23726_FusoPortal_Gene_1953 118 TKL-TSIKQAEDRELFRDLMNELNEPVPDSAIVHTLEEAENFVKEIDYP---VIVRPAFTMGGTG 178 988.*********************************************...9*****9999998 PP == domain 2 score: 18.1 bits; conditional E-value: 5e-07 ATPgrasp_Ter 246 deelielaeklaeafgldglvnvQtkededg.qpkLLEiNpRpsGGigy.stlaGvnlpylalklllglevaevvepe 321 + l +++ k+++a++++g nvQ+ d + +++++E+NpR+s + s ++G ++++a+k + g+ +e+ +p 23726_FusoPortal_Gene_1953 261 HHMLRDVSLKIIRALKIEGGCNVQIALDPNSfKYYIIEVNPRVSRSSALaSKATGYPIAKIAAKIAVGMTLDEIINPV 338 556778999*****************997763689********97666516667**************9766665554 PP == domain 3 score: 41.4 bits; conditional E-value: 4e-14 ATPgrasp_Ter 41 leaADealtePsglegeeyvefvldfckkheidvflpgrellllaarreeFeaaGvrllvgaasetlellddKvafyaaaeak 123 ++++D+ + eP +e v +ld k ++ v + g+ ++ la +++ + G+++l ++ +++++++d ++f + + 23726_FusoPortal_Gene_1953 602 FSISDKLYFEPL---TQEDVMEILDLEKPLGVVVQFGGQTAINLA---DKLVKNGIQILGSSL-DSIDTAEDRDRFEKLLIGL 677 567888888888...566677788999999988888888888776...67899******9999.******************* PP ATPgrasp_Ter 124 glpvpeaelvttaeeleaalaklrasgeklcvKPavgiggrGFrvidesadsleallkpesrkislaelvealssaeefppll 206 ++p p ++ ++e +al++ ++ g + v P+ ggr ++ ++ d + + + ++i++ p+l 23726_FusoPortal_Gene_1953 678 KIPQPLGKTAFDVE---TALKNANEIGYPVLVRPSYVLGGRAMEIVYNDEDLTKYME--KAVHINP------------DHPVL 743 ***99988777755...5555555555559*****************7777666654..4444444............4699* PP ATPgrasp_Ter 207 vmeyLegpEySvDvlae.kGevl....aaVpRrKekgriq.........elekdeelielaeklaeafgldglvnvQtkeded 275 + yL g+E+ vD +++ +++ + + R+ +++ + + ++ e li++++kla ++++gl+n+Q+ ++ 23726_FusoPortal_Gene_1953 744 IDRYLIGKEIEVDAISDgENTFIpgimEHIERAGVHSGDSisiyppqslSEKEIETLIDYTKKLASGLEVKGLINIQYVVSKG 826 ****************9766655444367888888333335588998444455689*************************** PP ATPgrasp_Ter 276 gqpkLLEiNpRpsGGig.ystlaGvnlpylalklllglevaevv 318 + ++LE+NpR+s ++ +s ++Gv ++++a++ +lg++ ++ 23726_FusoPortal_Gene_1953 827 E-IYVLEVNPRASRTVPfLSKVTGVPVANIAMQCILGKKLKDLG 869 *.**************8468899**************8776654 PP >> Dala_Dala_lig_C D-ala D-ala ligase C-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.0 0.0 1.6e-09 2.6e-06 26 174 .. 153 301 .. 143 308 .. 0.84 2 ! 36.4 0.0 2.1e-12 3.5e-09 28 174 .. 693 835 .. 682 845 .. 0.88 Alignments for each domain: == domain 1 score: 27.0 bits; conditional E-value: 1.6e-09 HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT-..SCEEEEE--.ESEEEEEEEEETSSCEEEEEEEEE CS Dala_Dala_lig_C 26 ellekveeelgypvfVKpareGSSvGvskveseeelkeaieeafkyd..ekvlvEeai.egreievavlgneklevsevgeiv 105 e e+ ++e+ ypv+V+pa + G + +ee+l+e + + ++y ++ l E+ i +eie v+ + + ++ +v ++ 23726_FusoPortal_Gene_1953 153 EEAENFVKEIDYPVIVRPAFTMGGTGGGICYNEEDLHEIVPNGLNYSpvHQCLLEKSIaGYKEIEYEVMRDSNDTAIVVCNM- 234 5678999************9988999999****************984479*******7889********665555544433. PP -SSSSS-HHHHHC.TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEE.ETTTEEEEEEEES CS Dala_Dala_lig_C 106 vkkgfydyeakysddkaqlevpaklekeveekiqelalkaykaldlrGlaRvDffl.teegeivlnEvNt 174 + +d +++d++ + +l++ +++ +++++lk+ +al+++G + v + l ++ + ++ EvN+ 23726_FusoPortal_Gene_1953 235 ---ENIDPVGIHTGDSIVVAPSQTLTDREHHMLRDVSLKIIRALKIEGGCNVQIALdPNSFKYYIIEVNP 301 ...334444445678899999999********************************44556999****96 PP == domain 2 score: 36.4 bits; conditional E-value: 2.1e-12 HHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT..-SCEEEEE--ESEEEEEEEEE.TSSCEEEEEEEEE-S CS Dala_Dala_lig_C 28 lekveeelgypvfVKpareGSSvGvskveseeelkeaieeafky..dekvlvEeaiegreievavlg.neklevsevgeivvk 107 k +e+gypv+V+p+ ++ v + e+l++++e+a++ d+ vl+++++ g+eiev + e++ + + e++ + 23726_FusoPortal_Gene_1953 693 ALKNANEIGYPVLVRPSYVLGGRAMEIVYNDEDLTKYMEKAVHInpDHPVLIDRYLIGKEIEVDAISdGENTFIPGIMEHIER 775 5566789**********9888889*****************87544899**************65551666778889999999 PP SSSS-HHHHHC.TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEES CS Dala_Dala_lig_C 108 kgfydyeakysddkaqlevpaklekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvNt 174 g+ s+d++++ p +l++++ e++ ++ +k + l+++Gl + ++++ +gei++ EvN+ 23726_FusoPortal_Gene_1953 776 AGVH------SGDSISIYPPQSLSEKEIETLIDYTKKLASGLEVKGLINIQYVVS-KGEIYVLEVNP 835 8885......6899*************************************9998.9*********7 PP >> MGS MGS-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.6 0.0 7.6 1.3e+04 63 93 .. 294 329 .. 266 330 .. 0.64 2 ? -2.2 0.0 2.7 4.5e+03 3 19 .. 640 656 .. 638 657 .. 0.86 3 ! 61.5 0.0 3.6e-20 5.9e-17 2 95 .] 950 1036 .. 949 1036 .. 0.92 Alignments for each domain: == domain 1 score: -3.6 bits; conditional E-value: 7.6 EEEEE--SHHHHHH.....SCHHHHHHHHHCTTSHC CS MGS 63 lvintlypfkatva.....kdgykirraaenidIpl 93 ++i+ ++p+ ++ + gy i+++a +i +++ 23726_FusoPortal_Gene_1953 294 YYIIEVNPRVSRSSalaskATGYPIAKIAAKIAVGM 329 555555554444444444457888888888888876 PP == domain 2 score: -2.2 bits; conditional E-value: 2.7 HHHHHHHHHTTEEEEEE CS MGS 3 velakklkelgfellAT 19 ++la kl+++g+++l + 23726_FusoPortal_Gene_1953 640 INLADKLVKNGIQILGS 656 789**********9976 PP == domain 3 score: 61.5 bits; conditional E-value: 3.6e-20 HHHHHHHHHHTTEEEEEEHHHHHHHHHTT--EEEEHHHHSTCSCGTCTCHHHHHHHTTSCEEEEEE--SHHHHHHSCHHHH CS MGS 2 lvelakklkelgfellATgGTakllkeagipvtevvektgegerlggrveildaikngeidlvintlypfkatvakdgyki 82 +++lak ++++gf++l T+GT+ +++e g++ v+k+g+ + ++++ldai+ng++d+vint+++ k+ ++ dg++i 23726_FusoPortal_Gene_1953 950 ALNLAKGFSDVGFSILTTEGTGIYFEEYGLK----VKKVGKI--DNSDYSVLDAIQNGDVDIVINTTTKGKSSEK-DGFRI 1023 5899***************************....7777766..445689***********************97.***** PP HHHHHCTTSHCCC CS MGS 83 rraaenidIplpt 95 rr a+++++ ++t 23726_FusoPortal_Gene_1953 1024 RRKATEYGVICFT 1036 *********9987 PP >> ATP-grasp_3 ATP-grasp domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.5 0.1 4.4e-07 0.00074 7 158 .. 131 303 .. 126 306 .. 0.74 2 ! 37.6 0.0 1.2e-12 1.9e-09 11 158 .. 674 837 .. 664 840 .. 0.79 Alignments for each domain: == domain 1 score: 19.5 bits; conditional E-value: 4.4e-07 HHHHHTTT..S---.........-EE..SS--SSSEEEEESS-------B--SS--TTE...............EEEE---S. CS ATP-grasp_3 7 tykkLkea.gvkvP.....tkleaee..leeeekklvvKprdGaggesvrvveekeeaeaaieeve........lvqefieG. 72 +++ L+++ + +vP ++le++e ++e +++++v p+ +gg++ + ++e++++++++ l+ + i G 23726_FusoPortal_Gene_1953 131 LFRDLMNElNEPVPdsaivHTLEEAEnfVKEIDYPVIVRPAFTMGGTGGGICYNEEDLHEIVPNGLnyspvhqcLLEKSIAGy 213 556666663556667777744444331134459**********************9999888865578998888999999997 PP EEEEEEEEE.SSSEEEEEEEEEEEET........TEEEEEEES----H...HHHHHHHHHHHHTTSTT--EEEEEEEEESS.. CS ATP-grasp_3 73 kplSvsllsdgekvlvlavnrqliekaeke....fvyaGnvtpietel...keevvelaeevvekleglaGyvGvDlvlkd.. 146 k++ +++ d ++ ++++n + i+ + + + v+p++t ++ ++++ +++++l ++ G v + l 23726_FusoPortal_Gene_1953 214 KEIEYEVMRDSNDTAIVVCNMENIDPVGIHtgdsI----VVAPSQTLTdreHHMLRDVSLKIIRAL-KIEGGCNVQIALDPns 291 7899********************97555433322....344554433211666778888999999.9999999999987755 PP .SEEEEEEESS- CS ATP-grasp_3 147 eepyviEvNPRl 158 + y+iEvNPR+ 23726_FusoPortal_Gene_1953 292 FKYYIIEVNPRV 303 789********8 PP == domain 2 score: 37.6 bits; conditional E-value: 1.2e-12 HTTT.S---...........-EESS--SSSEEEEESS-------B--SS--TTE...............EEEE---SEEEEEE CS ATP-grasp_3 11 LkeagvkvP.......tkleaeeleeeekklvvKprdGaggesvrvveekeeaeaaieeve........lvqefieGkplSvs 78 L +++ P ++ ++++e +++ v p++ gg ++ +v ++e++++ +e+ l+ +++ Gk++ v+ 23726_FusoPortal_Gene_1953 674 LIGLKIPQPlgktafdVETALKNANEIGYPVLVRPSYVLGGRAMEIVYNDEDLTKYMEKAVhinpdhpvLIDRYLIGKEIEVD 756 444555555666555555666777788***************************9999988999******************* PP EEE.SSSEEEEEEEEEEEET....TEEEEEEES----H..HHHHHHHHHHHHTTST...T--EEEEEEEEESS.SEEEEEEES CS ATP-grasp_3 79 llsdgekvlvlavnrqliekaekefvyaGnvtpietel..keevvelaeevvekle...glaGyvGvDlvlkdeepyviEvNP 156 ++sdge+ + + + +i e+ v +G ++ i + +e+ +e+ + ++kl +++G+ + v++++e+yv+EvNP 23726_FusoPortal_Gene_1953 757 AISDGENTFIPGIME-HI---ERAGVHSGDSISIYPPQslSEKEIETLIDYTKKLAsglEVKGLINIQYVVSKGEIYVLEVNP 835 ***997655544444.44...3468999999887543334888888888888888777799********************** PP S- CS ATP-grasp_3 157 Rl 158 R 23726_FusoPortal_Gene_1953 836 RA 837 *6 PP >> ATP-grasp ATP-grasp domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.0 0.0 7.8e-10 1.3e-06 3 160 .. 138 303 .. 136 311 .. 0.85 2 ! 23.0 0.0 2.7e-08 4.6e-05 16 160 .. 689 837 .. 676 840 .. 0.81 Alignments for each domain: == domain 1 score: 28.0 bits; conditional E-value: 7.8e-10 TTT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC....GTTCEEEEE----SEEEEEE CS ATP-grasp 3 klglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal....keekvivEefvpfekElsvl 81 +l+ pvp+ ++v++ ee+e++++e+++pv+v+ + G G ++ +eedl++++ + +++++E+ + kE+ 23726_FusoPortal_Gene_1953 138 ELNEPVPDSAIVHTLEEAENFVKEIDYPVIVR-PAFTMGGTGGGICYNEEDLHEIVPNGlnysPVHQCLLEKSIAGYKEIEYE 219 77889***************************.9999***************999877667767899**************** PP EEEETTC-EEE--EEEEEEETTEEE...EEEECEE-SCH.HHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCT.EEEEEEESS CS ATP-grasp 82 vvrsaeGetafypvvetvqedgilr...lsvapaevsek.aqkkaeeiakkiveeLggvGvfavElFvledge.llvnElapR 159 v+r+ + + ++ +e++ gi ++vap++ ++ +++ +++ ki+++L + G v + + ++ ++ E+ pR 23726_FusoPortal_Gene_1953 220 VMRDSNDTAIVVCNMENIDPVGIHTgdsIVVAPSQTLTDrEHHMLRDVSLKIIRALKIEGGCNVQIALDPNSFkYYIIEVNPR 302 ***99999888899999999988743337899988766626666777888**********99999888755546888888888 PP - CS ATP-grasp 160 p 160 + 23726_FusoPortal_Gene_1953 303 V 303 7 PP == domain 2 score: 23.0 bits; conditional E-value: 2.7e-08 CHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC....GTTCEEEEE----SEEEEEEEEEETTC-EEE-- CS ATP-grasp 16 skeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal....keekvivEefvpfekElsvlvvrsaeGetafyp 94 + e + + a+e+g+pv+v+ + G+ +v ++edl + +e + +++v++ + kE+ v ++ +Ge +f+p 23726_FusoPortal_Gene_1953 689 DVETALKNANEIGYPVLVR-PSYVLGGRAMEIVYNDEDLTKYMEKAvhinPDHPVLIDRYL-IGKEIEVDAIS--DGENTFIP 767 4555667779*********.99999****************99999999889999999875.46666666665..56656655 PP .EEEEEEETTEE....EEEEECEE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEESS- CS ATP-grasp 95 .vvetvqedgil....rlsvapaevsekaqkkaeeiakkiveeLggvGvfavElFvledgellvnElapRp 160 ++e++++ g+ + p+++sek+ ++ +++kk+++ L++ G++ + v +ge++v E+ pR 23726_FusoPortal_Gene_1953 768 gIMEHIERAGVHsgdsISIYPPQSLSEKEIETLIDYTKKLASGLEVKGLINIQYVVS-KGEIYVLEVNPRA 837 37799998766522116788999*****************************97666.9***********6 PP >> GARS_A Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.5 0.0 2.6e-05 0.043 4 108 .. 130 230 .. 127 303 .. 0.78 2 ! 18.2 0.0 9.1e-07 0.0015 9 112 .. 673 771 .. 667 838 .. 0.81 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 2.6e-05 HHHHHHHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEE CS GARS_A 4 sfakdllkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviE 86 + +dl+++ + p ++ + ++ eea+++++e + ++ +v+++ +g g ++ +ee+ ++v + l+ + ++ ++E 23726_FusoPortal_Gene_1953 130 ELFRDLMNELNEPVPDSAIVHTLEEAENFVKEIDYPV-IVRPAFTMGGTGGGICYNEEDLHEIVPNGLN----YSPVHQCLLE 207 5679*********************************.99999999***********998888888876....3467899999 PP E---S.EEEEEEEEECTTEEEE- CS GARS_A 87 elleG.eEvsllalvdgktvkpl 108 + + G +E+ ++ d ++++ + 23726_FusoPortal_Gene_1953 208 KSIAGyKEIEYEVMRDSNDTAIV 230 99999558888888887766544 PP == domain 2 score: 18.2 bits; conditional E-value: 9.1e-07 HHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEEE---S CS GARS_A 9 llkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelleG 91 ll +ip + ++ d+e+a + +e + ++ v+++ + +g+ + ++ + e+ +k++++ ++ + + v+i+ +l G 23726_FusoPortal_Gene_1953 673 LLIGLKIPQPLGKTAFDVETALKNANEIGYPV-LVRPSYVLGGRAMEIVYNDEDLTKYMEKAVH----INPDHPVLIDRYLIG 750 6667899999999999****************.99*******************9999988887....5789*********** PP EEEEEEEEECTTEEEE---BE CS GARS_A 92 eEvsllalvdgktvkplplaq 112 +E+ + a++dg+++ + 23726_FusoPortal_Gene_1953 751 KEIEVDAISDGENTFIPGIME 771 ***********9986555544 PP >> ATP-grasp_4 ATP-grasp domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.7 0.0 4.5 7.4e+03 74 103 .. 39 69 .. 37 72 .. 0.69 2 ! 5.3 0.0 0.0076 13 2 151 .. 163 302 .. 162 308 .. 0.75 3 ! 19.4 0.1 3.4e-07 0.00056 5 152 .. 704 837 .. 700 840 .. 0.76 Alignments for each domain: == domain 1 score: -3.7 bits; conditional E-value: 4.5 ATP-grasp_4 74 eeGepvilnilkkefas.eedvsdrlyvtsa 103 eeG++vil + + + ++++ d++y+ + 23726_FusoPortal_Gene_1953 39 EEGYEVILVNSNPATIMtDKEIADKVYIEPL 69 7888888877766655405569999998775 PP == domain 2 score: 5.3 bits; conditional E-value: 0.0076 ATP-grasp_4 2 slPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyieG.eEfavdayfdeeGepvilni 83 ++Pv+++P+ ++ G ++ nee++++ v + +y + ++ l+E+ i G +E+ ++ d++ +++++ 23726_FusoPortal_Gene_1953 163 DYPVIVRPAFTMGGTGGGICYNEEDLHEIVPNGL--------NYSP----VHQCLLEKSIAGyKEIEYEVMRDSNDTAIVVCN 233 6899999999999999999999999888544332........2333....478999999999779999999999988777766 PP ATP-grasp_4 84 lkkefaseedvsdrlyvtsakvieetleal.eellkevnallglknfpvHiElrvsedg.kiipiEvnpl 151 ++ ++ d + v +++ ++++++++ ++ ++ ++l+++ + + + + ++ ++ k + iEvnp+ 23726_FusoPortal_Gene_1953 234 MENIDPVGIHTGDSIVVAPSQTLTDREHHMlRDVSLKIIRALKIEGG-CNVQIALDPNSfKYYIIEVNPR 302 67777777788899888877766665555538888899999999755.5677777776668899999995 PP == domain 3 score: 19.4 bits; conditional E-value: 3.4e-07 ATP-grasp_4 5 vviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevve.eesflvEeyieGeEfavdayfdeeGepvilnilkk 86 v ++Ps + + + ++ n+e++ + +e+ ++ ++ +l+ y+ G+E+ vda d e ++ i i+++ 23726_FusoPortal_Gene_1953 704 VLVRPSYVLGGRAMEIVYNDEDLTKY---MEKA----------VHINpDHPVLIDRYLIGKEIEVDAISDGE-NTFIPGIMEH 772 55555555555555555555555542...2222..........122235678*****************888.89999***** PP ATP-grasp_4 87 efaseedvsdrl.yvtsakvieetlealeellkevnallglknfpvHiElrvsedgkiipiEvnplr 152 + d + + +++++e+++e+l +++k++++ l++k + + i vs+ g+i+++Evnp++ 23726_FusoPortal_Gene_1953 773 IERAGVHSGDSIsIYPPQSLSEKEIETLIDYTKKLASGLEVK-GLINIQYVVSK-GEIYVLEVNPRA 837 99999999999955678899****************999997.77999999886.99********75 PP >> ATP-grasp_5 ATP-grasp domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.5 0.0 0.0029 4.9 17 52 .. 134 169 .. 121 172 .. 0.88 2 ? 3.6 0.0 0.022 37 17 51 .. 672 706 .. 659 709 .. 0.85 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.0029 ATP-grasp_5 17 elleaygipvvetrlassaeeaveaaeeigypvvlK 52 +l++ ++ pv+++ ++++ eea + ++ei+ypv ++ 23726_FusoPortal_Gene_1953 134 DLMNELNEPVPDSAIVHTLEEAENFVKEIDYPVIVR 169 567777889************************875 PP == domain 2 score: 3.6 bits; conditional E-value: 0.022 ATP-grasp_5 17 elleaygipvvetrlassaeeaveaaeeigypvvl 51 +ll + ip + + a ++e a++ a+eigypv + 23726_FusoPortal_Gene_1953 672 KLLIGLKIPQPLGKTAFDVETALKNANEIGYPVLV 706 677777889999999*****************976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1059 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 611 (0.0365606); expected 334.2 (0.02) Passed bias filter: 543 (0.0324916); expected 334.2 (0.02) Passed Vit filter: 58 (0.00347056); expected 16.7 (0.001) Passed Fwd filter: 10 (0.000598372); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 10 [number of targets reported over threshold] # CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.44 # Mc/sec: 6996.70 // [ok]