# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1974.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1974 [L=224] Description: # 2120410 # 2121081 # -1 # ID=1_1974;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.278 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-31 109.9 0.0 2.1e-31 109.2 0.0 1.3 1 ABC_tran ABC transporter 3.2e-10 40.2 4.9 9.8e-07 28.8 0.4 2.1 2 AAA_21 AAA domain, putative AbiEii toxin, Type IV TA s 1.4e-06 27.9 0.6 0.011 15.1 0.0 2.1 2 SMC_N RecF/RecN/SMC N terminal domain 3.8e-05 23.2 0.1 7.2e-05 22.3 0.1 1.5 1 AAA_29 P-loop containing region of AAA domain 7.8e-05 22.9 0.4 0.00081 19.6 0.4 2.0 1 AAA_22 AAA domain 0.001 18.9 0.2 0.0023 17.7 0.0 1.6 2 RsgA_GTPase RsgA GTPase 0.0014 18.2 0.7 0.039 13.5 0.2 2.1 2 AAA_15 AAA ATPase domain 0.003 18.0 0.0 1.1 9.6 0.0 2.2 2 AAA_18 AAA domain 0.006 16.4 0.8 0.088 12.6 0.8 2.1 1 ATPase_2 ATPase domain predominantly from Archaea ------ inclusion threshold ------ 0.012 16.1 1.3 0.017 15.6 1.3 1.5 1 AAA_23 AAA domain 0.014 15.3 0.3 0.043 13.8 0.1 1.9 2 MMR_HSR1 50S ribosome-binding GTPase 0.016 14.8 0.0 0.16 11.6 0.0 2.0 2 AAA_30 AAA domain 0.017 14.0 0.0 0.67 8.8 0.0 2.1 2 DUF3987 Protein of unknown function (DUF3987) 0.037 13.7 0.1 0.66 9.6 0.0 2.1 2 AAA_24 AAA domain 0.037 14.3 0.0 0.077 13.3 0.0 1.5 2 AAA_16 AAA ATPase domain 0.046 13.5 0.0 0.077 12.8 0.0 1.4 1 APS_kinase Adenylylsulphate kinase 0.061 11.9 0.2 0.59 8.6 0.0 1.9 2 AAA_13 AAA domain 0.063 13.1 0.2 0.17 11.7 0.1 1.7 1 NACHT NACHT domain 0.092 12.3 0.1 0.32 10.5 0.0 1.9 2 SH3_1 SH3 domain 0.12 12.0 0.0 0.19 11.3 0.0 1.3 1 Ribosomal_L4 Ribosomal protein L4/L1 family Domain annotation for each model (and alignments): >> ABC_tran ABC transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 109.2 0.0 2.5e-34 2.1e-31 2 137 .] 22 169 .. 21 169 .. 0.96 Alignments for each domain: == domain 1 score: 109.2 bits; conditional E-value: 2.5e-34 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTEEGGG....B-HHHCCHCEEEE-SS--S-TTSBHHHH. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF ABC_tran 2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke....qeleslrkeigvlpqepqlfpeltvren. 79 k+v+l++ g v i+G++G+GKStLl+++agll+ ++G++lldg++ e ++ ++ +k+ig++pq p l l++ en 23726_FusoPortal_Gene_1974 22 KDVDLNILDGDFVHIIGRSGSGKSTLLNIVAGLLSADKGTLLLDGTNYLElndeEKSKFRNKNIGFIPQSPALLGYLNILENi 104 89*********************************************9999999999999*********************** PP ...........HHHTCHHHHHHCSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS ...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF ABC_tran 80 ...........esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137 +s+ ++ +l++lgl++l+++ ++LSgG+ +r+ +aral+++pk+l++DEpt+ 23726_FusoPortal_Gene_1974 105 rlpydmyekdgDSEGKARYFLNELGLEHLAKSYP----KELSGGELRRIIIARALMTDPKILIADEPTS 169 ******9998888888************888877....*****************************96 PP >> AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.8 2.2 5e-06 0.0042 4 106 .. 36 119 .. 33 137 .. 0.71 2 ! 28.8 0.4 1.2e-09 9.8e-07 142 298 .. 61 199 .. 56 204 .. 0.89 Alignments for each domain: == domain 1 score: 16.8 bits; conditional E-value: 5e-06 AAA_21 4 liGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqveek 86 +iG+ gsGKS+LL + +l + + g+ +++ +l +++++++f+ + f q++ + l++ +++ 23726_FusoPortal_Gene_1974 36 IIGRSGSGKSTLLNIVAGLLS----------ADKGTLLLDGTNYLELNDEEKSKFRNKNIGFIPQSPALLGYLNILENIR--- 105 9****************9976..........6777777777777777888888888887778888887777777777777... PP AAA_21 87 lssvetllesgllldkrsle 106 l +++ +d +s+ 23726_FusoPortal_Gene_1974 106 ------LPYDMYEKDGDSEG 119 ......44444444444444 PP == domain 2 score: 28.8 bits; conditional E-value: 1.2e-09 AAA_21 142 kaltditsrawsllllldglrkerigllnifadyfgfakekrllqrlvrslklveielsdlgegeeliasvderlrergvvfl 224 +l+d t+ ++ +++ ++r+++ig+ + +++g+ ++++ ++ ++ + ++++ + +++ ++ +++++ + 23726_FusoPortal_Gene_1974 61 TLLLDGTNYLELNDEEKSKFRNKNIGFIPQSPALLGYLNILENIRLPYDMYEKDGDSEGKARYFLNELGLEHLAKSY------ 137 55666777777777788888888******************************************999999999877...... PP AAA_21 225 engdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298 + elS G +r +++ l +++ ++l+ DEp + L+ ++++++++llk+ +++g+ ++++TH 23726_FusoPortal_Gene_1974 138 ---------PKELSGGELRR-IIIARALMTDP--KILIADEPTSDLDIEATKEVMDLLKKINEKGTTILIVTHE 199 .........999********.88888888887..79**********************888888*********7 PP >> SMC_N RecF/RecN/SMC N terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.1 0.2 0.00021 0.18 23 51 .. 30 58 .. 15 83 .. 0.79 2 ! 15.1 0.0 1.3e-05 0.011 134 212 .. 138 213 .. 108 218 .. 0.82 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 0.00021 TSSEEEEEESTTSSHHHHHHHHHHHHTT. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF SMC_N 23 sksftaivGpNGSGKsnlldAilFvLGer 51 + f i+G+ GSGKs ll+ + +L+ + 23726_FusoPortal_Gene_1974 30 DGDFVHIIGRSGSGKSTLLNIVAGLLSAD 58 567999***********999887777755 PP == domain 2 score: 15.1 bits; conditional E-value: 1.3e-05 TTCS-HHHHHHHHHHHHHHHHTCS--SEEEECSTTTTS-HHHHHHHHHHHHHHCCT.SEEEEE-SSHHHHTT-SCEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF SMC_N 134 kelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadklvgvt 212 +++LSgGe +++A + + + De + LD + +k+v +llk+ +++ + +++++++ ++l+ +k++ ++ 23726_FusoPortal_Gene_1974 138 PKELSGGELR----RIIIARALMTDPKILIADEPTSDLDIEATKEVMDLLKKINEKgTTILIVTHELDTLKYGKKVYTMS 213 5689999976....44555444455557789********************9877769999*********9999998775 PP >> AAA_29 P-loop containing region of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.3 0.1 8.6e-08 7.2e-05 22 50 .. 30 59 .. 16 63 .. 0.76 Alignments for each domain: == domain 1 score: 22.3 bits; conditional E-value: 8.6e-08 AAA_29 22 kg.vtlltGpsGsGKSTllDAiqalLvpak 50 +g ++ ++G+sGsGKSTll ++ lL ++k 23726_FusoPortal_Gene_1974 30 DGdFVHIIGRSGSGKSTLLNIVAGLLSADK 59 346999*************99999988876 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.6 0.4 9.7e-07 0.00081 7 134 .. 33 201 .. 29 203 .. 0.69 Alignments for each domain: == domain 1 score: 19.6 bits; conditional E-value: 9.7e-07 AAA_22 7 ilvvtGesGtGKTtllrrlleqldeeakaee..........................................erpevvfvtl 47 ++ ++G sG+GK+tll+ ++ l ++ + e+ ++ + 23726_FusoPortal_Gene_1974 33 FVHIIGRSGSGKSTLLNIVAGLLSAD----KgtllldgtnylelndeekskfrnknigfipqspallgylnilENIRLPYDMY 111 6779******************9655....23446999999999999888888877777777776666666644444333333 PP AAA_22 48 psstsskdllrellralglelka....erlsseellealeqalraravielliiDEaqh.lr...seealeeLrsllnlsrkg 122 ++++s+ +r +l++lgle+ a ++ls el++ + + ++ ++li DE l+ ++e++ L+++ +kg 23726_FusoPortal_Gene_1974 112 EKDGDSEGKARYFLNELGLEHLAksypKELSGGELRRIIIARALMTDP-KILIADEPTSdLDieaTKEVMDLLKKIN---EKG 190 333367777777777777777777777777888888777777777777.9******999995543344444444443...455 PP AAA_22 123 vqliLvGtpelr 134 ++ iL+ t+el+ 23726_FusoPortal_Gene_1974 191 TT-ILIVTHELD 201 54.577777776 PP >> RsgA_GTPase RsgA GTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.7 0.0 2.8e-06 0.0023 95 121 .. 27 53 .. 3 63 .. 0.79 2 ? -2.1 0.0 3.5 3e+03 65 81 .. 179 195 .. 148 213 .. 0.61 Alignments for each domain: == domain 1 score: 17.7 bits; conditional E-value: 2.8e-06 HHCTTSEEEEECSTTSSHHHHHHHHCT CS RsgA_GTPase 95 ellkdktsvlvGqSGvGKStLinallp 121 + l+++++ ++G SG GKStL+n +++ 23726_FusoPortal_Gene_1974 27 NILDGDFVHIIGRSGSGKSTLLNIVAG 53 46788999***************9877 PP == domain 2 score: -2.1 bits; conditional E-value: 3.5 HHHHHHHHHHTTSEEEE CS RsgA_GTPase 65 leelkeelealgyevll 81 + +l +++++ g+++l+ 23726_FusoPortal_Gene_1974 179 VMDLLKKINEKGTTILI 195 33333333333333333 PP >> AAA_15 AAA ATPase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.5 0.2 4.7e-05 0.039 14 72 .. 21 83 .. 16 125 .. 0.82 2 ? 3.5 0.0 0.051 42 338 380 .. 157 198 .. 144 208 .. 0.80 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 4.7e-05 AAA_15 14 lkdteidldee.ltvliGkNnsGKSsilealdlflnnkekkn......enkvikiekedlekfeni 72 kd+++++ + + +iG+ +sGKS++l++ +l+ + + +++ +++e+ +kf+n+ 23726_FusoPortal_Gene_1974 21 VKDVDLNILDGdFVHIIGRSGSGKSTLLNIVAGLLSAD---KgtllldGTNYLELNDEEKSKFRNK 83 57788887666799******************999977...3347887445666666666666554 PP == domain 2 score: 3.5 bits; conditional E-value: 0.051 AAA_15 338 ekinilaiEEPEahlHPqlqkvlikllkelannnktQviitTH 380 +++ il+ +EP l ++ k++++llk++ +++ ++i TH 23726_FusoPortal_Gene_1974 157 TDPKILIADEPTSDLDIEATKEVMDLLKKINEKGT-TILIVTH 198 45688888888888888999999999998888885.8888888 PP >> AAA_18 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.6 0.0 0.0014 1.1 3 44 .. 36 75 .. 34 117 .. 0.72 2 ? 6.6 0.0 0.012 9.9 46 91 .. 165 207 .. 129 217 .. 0.77 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 0.0014 AAA_18 3 ltGtpGvGKttlareLskrlgfgvnlrdvakenglllevdpe 44 + G +G+GK+tl + ++ +l + + ++ ++ +le ++e 23726_FusoPortal_Gene_1974 36 IIGRSGSGKSTLLNIVAGLL--SADKGTLLLDGTNYLELNDE 75 8999**********999887..55555555554444444444 PP == domain 2 score: 6.6 bits; conditional E-value: 0.012 AAA_18 46 ldeskrldedkldklldaleenssaleegenlvvdghlaelfsera 91 ++++ ld+++ +++d+l++++ e+g ++++ h + +++ 23726_FusoPortal_Gene_1974 165 DEPTSDLDIEATKEVMDLLKKIN---EKGTTILIVTHELDTLKYGK 207 3567999**************97...69999999888777766655 PP >> ATPase_2 ATPase domain predominantly from Archaea # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.6 0.8 0.00011 0.088 21 131 .. 32 204 .. 26 214 .. 0.68 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 0.00011 ATPase_2 21 eiyfiYGpegsGKtaLlkeiienl.edkdk...yviyyialreesiskldefie........................eeeek 75 +++ i G+ gsGK++Ll+ ++ l dk+ + y +l++e+ sk++++ + + 23726_FusoPortal_Gene_1974 32 DFVHIIGRSGSGKSTLLNIVAGLLsADKGTlllDGTNYLELNDEEKSKFRNK-NigfipqspallgylnilenirlpyD---- 109 578899***********98888884444446666677777777777777776.33555555555555544444444441.... PP ATPase_2 76 kklekal.................................................giavpkaeleeilkeksklvfkaiell 109 + +i + +e ++ +++k + +l 23726_FusoPortal_Gene_1974 110 ------MyekdgdsegkaryflnelglehlaksypkelsggelrriiiaralmtdpKILIA----DEPTSDLDIEATKEVMDL 182 ......1555555555566678888999999999999999999988887765444322222....222235566778888999 PP ATPase_2 110 lekikkkgkkiiiiiDelqkli 131 l+ki++kg+ i i+ el l+ 23726_FusoPortal_Gene_1974 183 LKKINEKGTTILIVTHELDTLK 204 9999999999999999988887 PP >> AAA_23 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.6 1.3 2e-05 0.017 11 52 .. 22 64 .. 2 208 .. 0.73 Alignments for each domain: == domain 1 score: 15.6 bits; conditional E-value: 2e-05 AAA_23 11 rdqeidF.skgltlItGpNGaGKTTildAiklaLygetprlsr 52 +d++++ + ++ I G G+GK+T+l+ + L ++++l 23726_FusoPortal_Gene_1974 22 KDVDLNIlDGDFVHIIGRSGSGKSTLLNIVAGLLSADKGTLLL 64 33344437778999**************999988887765544 PP >> MMR_HSR1 50S ribosome-binding GTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.8 0.1 5.1e-05 0.043 2 21 .. 34 53 .. 33 74 .. 0.88 2 ? -1.4 0.0 2.7 2.2e+03 28 38 .. 187 197 .. 150 210 .. 0.64 Alignments for each domain: == domain 1 score: 13.8 bits; conditional E-value: 5.1e-05 EEEEESTTSSHHHHHHHHHT CS MMR_HSR1 2 vaivGrpNvGKStLinaltg 21 v i+Gr+ +GKStL+n g 23726_FusoPortal_Gene_1974 34 VHIIGRSGSGKSTLLNIVAG 53 789*************8765 PP == domain 2 score: -1.4 bits; conditional E-value: 2.7 SSTTSSSSCEE CS MMR_HSR1 28 dkpgtTrdine 38 +++gtT+ i++ 23726_FusoPortal_Gene_1974 187 NEKGTTILIVT 197 34445544444 PP >> AAA_30 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 0.0 0.00019 0.16 20 48 .. 33 61 .. 24 67 .. 0.84 2 ? 1.0 0.0 0.32 2.7e+02 85 122 .. 155 196 .. 121 200 .. 0.73 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 0.00019 AAA_30 20 vavltGpAGtGKttalkalreaweaaggr 48 ++ + G+ G+GK+t+l+ ++ ++ a++g+ 23726_FusoPortal_Gene_1974 33 FVHIIGRSGSGKSTLLNIVAGLLSADKGT 61 67899***************999988655 PP == domain 2 score: 1.0 bits; conditional E-value: 0.32 AAA_30 85 rlepgtllivDEagmv....dtkqlaallkaaekagakvilv 122 +++ ++li DE +tk++ +llk+++++g+++++v 23726_FusoPortal_Gene_1974 155 LMTDPKILIADEPTSDldieATKEVMDLLKKINEKGTTILIV 196 455568888888544335557888889999999999998877 PP >> DUF3987 Protein of unknown function (DUF3987) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.8 0.0 0.0008 0.67 38 62 .. 33 57 .. 32 85 .. 0.83 2 ? 3.2 0.0 0.041 34 134 158 .. 182 206 .. 174 217 .. 0.86 Alignments for each domain: == domain 1 score: 8.8 bits; conditional E-value: 0.0008 DUF3987 38 ytlvvapsGerKSpvdklvlrplee 62 ++ ++++sG++KS+++++v+ +l + 23726_FusoPortal_Gene_1974 33 FVHIIGRSGSGKSTLLNIVAGLLSA 57 5779***************999875 PP == domain 2 score: 3.2 bits; conditional E-value: 0.041 DUF3987 134 LlelLaengggililsdEggiflaa 158 Ll+ ++e g +ili++ E+++++ + 23726_FusoPortal_Gene_1974 182 LLKKINEKGTTILIVTHELDTLKYG 206 8999*****************9866 PP >> AAA_24 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.6 0.0 0.00079 0.66 6 45 .. 35 71 .. 33 111 .. 0.83 2 ? 2.0 0.0 0.16 1.3e+02 107 132 .. 175 200 .. 173 221 .. 0.84 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 0.00079 AAA_24 6 liyGpsgiGKTtlakelgpkplfidtekGlksldadkfpd 45 i+G sg+GK+tl++ + ++ +kG+ ld++++ + 23726_FusoPortal_Gene_1974 35 HIIGRSGSGKSTLLNIV---AGLLSADKGTLLLDGTNYLE 71 59************999...77788888888888877655 PP == domain 2 score: 2.0 bits; conditional E-value: 0.16 AAA_24 107 laeefrrllkklqelrknvifiahek 132 +++e+++llkk++e + ++ ++ he 23726_FusoPortal_Gene_1974 175 ATKEVMDLLKKINEKGTTILIVTHEL 200 6899999*******999999999974 PP >> AAA_16 AAA ATPase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 9.2e-05 0.077 26 55 .. 33 62 .. 24 106 .. 0.83 2 ? -2.2 0.0 5.2 4.3e+03 10 10 .. 177 177 .. 120 199 .. 0.62 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 9.2e-05 AAA_16 26 lvllsGesGvGKsslvrellralekdggif 55 v ++G sG+GKs+l++ ++ l++d+g + 23726_FusoPortal_Gene_1974 33 FVHIIGRSGSGKSTLLNIVAGLLSADKGTL 62 6899*************9998888885444 PP == domain 2 score: -2.2 bits; conditional E-value: 5.2 AAA_16 10 e 10 + 23726_FusoPortal_Gene_1974 177 K 177 2 PP >> APS_kinase Adenylylsulphate kinase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 0.0 9.2e-05 0.077 4 40 .. 33 68 .. 30 94 .. 0.81 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 9.2e-05 EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHH CS APS_kinase 4 vvwltGlsgsGKstianalekkLvekgisvylLdGdn 40 v++ G sgsGKst+ n ++ L + + + lLdG n 23726_FusoPortal_Gene_1974 33 FVHIIGRSGSGKSTLLNIVAG-LLSADKGTLLLDGTN 68 68899************9995.5566678899***98 PP >> AAA_13 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.1 0.0 0.13 1.1e+02 21 39 .. 36 54 .. 31 76 .. 0.87 2 ? 8.6 0.0 0.0007 0.59 524 579 .. 156 208 .. 149 217 .. 0.90 Alignments for each domain: == domain 1 score: 1.1 bits; conditional E-value: 0.13 AAA_13 21 iYGwNGaGKTtLSrllrsl 39 i G+ G+GK+tL ++ + l 23726_FusoPortal_Gene_1974 36 IIGRSGSGKSTLLNIVAGL 54 66999*******9998876 PP == domain 2 score: 8.6 bits; conditional E-value: 0.0007 AAA_13 524 igkdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevkk 579 ++ ki + D P S LD ++ v+ l+k+ +k ++i TH l+ +k+ kk 23726_FusoPortal_Gene_1974 156 MTDPKILIADEPTSDLDIEATKEVMDLLKKIN---EKGTTILIVTHELDTLKYGKK 208 46789*************************96...9999**********9998765 PP >> NACHT NACHT domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 0.1 0.00021 0.17 3 27 .. 34 58 .. 32 63 .. 0.84 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 0.00021 NACHT 3 vilqGeaGsGKTtLlqklalawaeg 27 v + G++GsGK+tLl +a ++ ++ 23726_FusoPortal_Gene_1974 34 VHIIGRSGSGKSTLLNIVAGLLSAD 58 7899***********9988777665 PP >> SH3_1 SH3 domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 0.0 0.00038 0.32 5 30 .. 17 42 .. 16 43 .. 0.93 2 ? -2.6 0.0 4.7 3.9e+03 41 47 .. 83 89 .. 78 90 .. 0.70 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 0.00038 SBE-SSTTB-EB-TTEEEEEEEECSS CS SH3_1 5 DYeaeesdELsfkkGDviivleksed 30 D+ a+++ +L++ GD ++++ +s + 23726_FusoPortal_Gene_1974 17 DFFAVKDVDLNILDGDFVHIIGRSGS 42 9********************99875 PP == domain 2 score: -2.6 bits; conditional E-value: 4.7 TEEEEEE CS SH3_1 41 gkeGliP 47 + G+iP 23726_FusoPortal_Gene_1974 83 KNIGFIP 89 469***9 PP >> Ribosomal_L4 Ribosomal protein L4/L1 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.0 0.00023 0.19 105 147 .. 158 201 .. 147 214 .. 0.82 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 0.00023 TT-EEEES---..-SS--HHHHHHHHHHCT-TTSSEEEEESSST CS Ribosomal_L4 105 qglllvvdnle.pleesktkelvellkklglksksvLivvsekd 147 + ++l+ d+ + +l+++ tke++ llkk++ k +Liv++e d 23726_FusoPortal_Gene_1974 158 DPKILIADEPTsDLDIEATKEVMDLLKKINEKGTTILIVTHELD 201 5677777766557999***********************98744 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (224 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 540 (0.0323121); expected 334.2 (0.02) Passed bias filter: 482 (0.0288416); expected 334.2 (0.02) Passed Vit filter: 94 (0.0056247); expected 16.7 (0.001) Passed Fwd filter: 20 (0.00119674); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 20 [number of targets reported over threshold] # CPU time: 0.27u 0.24s 00:00:00.51 Elapsed: 00:00:00.32 # Mc/sec: 2034.92 // [ok]