# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_198.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_198 [L=333] Description: # 210603 # 211601 # -1 # ID=1_198;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.285 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.8e-39 133.1 0.0 1.2e-38 132.8 0.0 1.1 1 Epimerase NAD dependent epimerase/dehydratase family 1.9e-16 60.3 0.2 2.7e-16 59.7 0.2 1.2 1 GDP_Man_Dehyd GDP-mannose 4,6 dehydratase 4.2e-10 39.0 0.0 1e-09 37.7 0.0 1.6 1 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomeras 0.00016 20.9 0.0 0.0014 17.7 0.0 2.3 2 Polysacc_synt_2 Polysaccharide biosynthesis protein 0.00072 18.7 0.0 0.016 14.3 0.0 2.1 2 NAD_binding_4 Male sterility protein 0.00073 18.6 0.0 0.001 18.1 0.0 1.5 1 RmlD_sub_bind RmlD substrate binding domain ------ inclusion threshold ------ 0.018 14.3 0.4 0.42 9.8 0.3 2.3 2 ThiF ThiF family 0.097 12.5 0.2 0.34 10.7 0.2 2.0 1 KR KR domain Domain annotation for each model (and alignments): >> Epimerase NAD dependent epimerase/dehydratase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 132.8 0.0 6e-42 1.2e-38 1 241 [] 2 247 .. 2 247 .. 0.85 Alignments for each domain: == domain 1 score: 132.8 bits; conditional E-value: 6e-42 EEEETTTSHHHHHHHHHHHHCTSE.EEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHH..HH..T-SEEEE--S---HHH CS Epimerase 1 ilVtGatGfiGsalvkallekgye.vigldrlssasntarledlelveldltdrsalerlfk..ee..qpdavihlAavggvaa 79 i+VtG++G+iGsa+v +l+e g++ ++ +d+l++++++ +++ + + d+ d+++l++ ++ e+ +++avih++a + a+ 23726_FusoPortal_Gene_198 2 IIVTGGAGMIGSAFVWKLNEMGIKdILIVDKLRKEDKWLNIR--KREYYDWIDKDNLKEWLAckENadNIEAVIHMGA--CSAT 81 89********************777*******9999999999..677889999998888765213335899*****55..3444 PP HHHSHHHHHHHHTHHHHHHHHHHHHHTCTEEEEEEEGGGGTSBSS..SSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT CS Epimerase 80 ssedpadfieknlqgtlnlleaarkagvkrllflsSsevYGkdae..qpkeettltgplkpnspYaaaKlageklveayaaqyg 161 + +d+ ++++n+ +t l + + ++++ +++++sS+++YG ++ + + + ++l p + Y+++K ++ + + ++q + 23726_FusoPortal_Gene_198 82 TETDADFLMDNNFGYTKFLWNFCAEKNI-KYIYASSAATYGMGELgyNDDVSPEELQKLMPLNKYGYSKKFFDDWAFKQKNQPK 164 4455555667******************.************888853235666666788***************9999999985 PP -EEEEEEESEEESTT.S-TTSTTSHHHHHHHHHHCTSSSEEEET.......TST-EEEEEEHHHHHHHHHHHHHHHTT-STTEE CS Epimerase 162 lnaiilrlfnlyGpr.ngegevsrvipalirkilegkqevtllg.......dgtalRdflyveDvaeaillvlehvdagdkgei 237 + l+ fn+yGp ++g++++++++ ++ +e+ v+l++ dg++lRdf+yv+Dv+++++++l + + k +i 23726_FusoPortal_Gene_198 165 -QWNGLKFFNVYGPQeYHKGRMASMVFHTYNQYKENG-YVKLFKsykegfkDGEQLRDFVYVKDVVDIMYFMLVN---DVKSGI 243 .999***********555566**************99.8888888888999************************...78899* PP EEES CS Epimerase 238 yniG 241 yniG 23726_FusoPortal_Gene_198 244 YNIG 247 ***9 PP >> GDP_Man_Dehyd GDP-mannose 4,6 dehydratase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.7 0.2 1.3e-19 2.7e-16 1 281 [. 3 277 .. 3 319 .. 0.66 Alignments for each domain: == domain 1 score: 59.7 bits; conditional E-value: 1.3e-19 EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH....T-SEEE CS GDP_Man_Dehyd 1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlykdpeaeleenlklvkgDltDssslerllaev....qpdevy 80 ++TG+aG iGs ++ L e g + + iv + + ++ +++k + D D+++l++ la ++++v+ 23726_FusoPortal_Gene_198 3 IVTGGAGMIGSAFVWKLNEMGIKDILIVDKLRKE--DKWLNIRK-----------REYYDWIDKDNLKEWLACKenadNIEAVI 73 59*******************9988776543332..23333332...........2499**********99754334589**** PP E--S---HHHHTTSHHCHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-SBS.....SSSB-TTS-----SHHHHHHHH CS GDP_Man_Dehyd 81 nLAAqshVdvsfekPeytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvq.....evpqtEttpfyPrsPYaaaKly 159 +++A s+ ++ ++ + n G ++ L a ek+++++ aS++ YG + +v +E +++ P + Y+ +K + 23726_FusoPortal_Gene_198 74 HMGACSATTET--DAD-FLMDNNFGYTKFLWNFCA---EKNIKYIYASSAATYGMGElgyndDVSPEELQKLMPLNKYGYSKKF 151 ******98873..444.555556677777765533...4789***********9986556556777899************988 PP HHHHHHHHHHHH---EEEEEE-EEESTTS-TTS.CCCHHHHHHHHHHTT....S-C-EE..ETTTT-EEEEEEHHHHHHHHHHH CS GDP_Man_Dehyd 160 aewivvnyreayglfavngilfNhesprrgetf.vtrkitraiakialg....kqevlv..lGnldakRdwghvkDyveamwlm 236 + + + +++ + + + +fN ++p ++ + + ++ + +++ + + ++ + ++++ Rd+ +vkD+v+ m m 23726_FusoPortal_Gene_198 152 FDDWAFKQKNQPKQWN-GLKFFNVYGPQEYHKGrMASMVFHTYNQYKENgyvkLFKSYKegFKDGEQLRDFVYVKDVVDIMYFM 234 7766665555555443.3689**99999766532333444444444443111022333322469******************** PP HHCSS-.--EEE-TT-EEECHHCHHCCHHCCCHHHHHH........ CS GDP_Man_Dehyd 237 lqqdkp.edyviatgetysvrefvelaflelgkeiewegkgeeevg 281 l +d + y+i tg+ r+f++l+++ + ++ +++ev 23726_FusoPortal_Gene_198 235 LVNDVKsGIYNIGTGKA---RSFMDLSMATMRAASHNDNLDKNEVV 277 *9875415688888886...55555555555443333333334433 PP >> 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.7 0.0 5e-13 1e-09 1 225 [. 3 229 .. 3 240 .. 0.70 Alignments for each domain: == domain 1 score: 37.7 bits; conditional E-value: 5e-13 3Beta_HSD 1 vvtGggGFlGrrivkeLlrleelkevrvlD.lresselleelskvnvktkkvlegD.vrdkekleealegvdvvihtasivdva 82 +vtGg+G +G++ v +L +++ +k++ ++D lr+++++ +++k + + + D +++ +e +++++vih+ ++ + 23726_FusoPortal_Gene_198 3 IVTGGAGMIGSAFVWKLNEMG-IKDILIVDkLRKEDKW-LNIRKREYYD--WIDKDnLKEWLACKENADNIEAVIHM-GACSAT 81 69******************9.8*******44555555.4445555553..5555525556677888999*******.555566 PP 3Beta_HSD 83 gkleedeilevnvkGTqnvleacvkagvrvlvYtSsaevvgpns..rgdeilngdEetpyesthkdayaesKalaEklvlkang 164 ++ d +++ n T+ + + c+++++++ +Y Ssa g ++d++ Ee + ++ + y +sK+ ++ k + 23726_FusoPortal_Gene_198 82 TETDADFLMDNNFGYTKFLWNFCAEKNIKY-IYASSAATYGMGElgYNDDVS--PEE-LQKLMPLNKYGYSKKFFDDWAFKQKN 161 66999***********************97.8****9998773301334443..333.34556888999999999998887777 PP 3Beta_HSD 165 rtlk.nggrllTcaLRpagiyGegdkllvpllkkllksglalf.k.....igekealsdrvYvgNvaw 225 ++ + ng +++ + + G +++++++++++++g++++ k + + e+l d+vYv v++ 23726_FusoPortal_Gene_198 162 QPKQwNGLKFFNVYGPQEYHKGRMASMVFHTYNQYKENGYVKLfKsykegFKDGEQLRDFVYVKDVVD 229 55441554666655444444455556666777777777765431211111345678889999999886 PP >> Polysacc_synt_2 Polysaccharide biosynthesis protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.7 0.0 6.8e-07 0.0014 1 52 [. 2 56 .. 2 117 .. 0.77 2 ? 0.4 0.0 0.13 2.7e+02 133 158 .. 140 165 .. 137 200 .. 0.78 Alignments for each domain: == domain 1 score: 17.7 bits; conditional E-value: 6.8e-07 EEEETTTSHHHHHHHHHHHHHB-SEEEEEE..S-HHHHHHHHHH.......-TTE CS Polysacc_synt_2 1 vlvtGagGsiGselvrqilkekpkkiille..rdElklyeieke.leeelkkkkl 52 ++vtG++G iGs++v ++ ++ +k i++++ r+E k +i+k+ + + ++k++l 23726_FusoPortal_Gene_198 2 IIVTGGAGMIGSAFVWKLNEMGIKDILIVDklRKEDKWLNIRKReYYDWIDKDNL 56 79***************************94458999999988744444455444 PP == domain 2 score: 0.4 bits; conditional E-value: 0.13 S--SHHHHHHHHHHHHHHHGGG--SS CS Polysacc_synt_2 133 nPtnvmGatKrlaekllqalakesee 158 P n +G +K++ + + + +++ ++ 23726_FusoPortal_Gene_198 140 MPLNKYGYSKKFFDDWAFKQKNQPKQ 165 699********999887766665533 PP >> NAD_binding_4 Male sterility protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.5 0.0 0.03 64 1 19 [. 4 22 .. 4 54 .. 0.80 2 ! 14.3 0.0 7.6e-06 0.016 82 156 .. 63 136 .. 56 201 .. 0.75 Alignments for each domain: == domain 1 score: 2.5 bits; conditional E-value: 0.03 EE-TTSHHHHHHHHHHHHH CS NAD_binding_4 1 lTGaTGFLGkvLlekLLrt 19 +TG+ G++G+ ++ kL + 23726_FusoPortal_Gene_198 4 VTGGAGMIGSAFVWKLNEM 22 7************998655 PP == domain 2 score: 14.3 bits; conditional E-value: 7.6e-06 HHHHHH--EEEE--SS-S.ST.TSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H... CS NAD_binding_4 82 qelaeevdviihsaAtvnfde.pykellrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeege 156 +e a++++++ih++A +e + + l++ N t+ + +++++ + +++ S+a+ +g e +++v +e+ 23726_FusoPortal_Gene_198 63 KENADNIEAVIHMGACSATTEtDADFLMDNNFGYTKFLWNFCAEKNI--KYIYASSAATYGMGELGYNDDVSPEEL 136 6789**********9877766266668888888899999****6555..599****88888777666555444333 PP >> RmlD_sub_bind RmlD substrate binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.1 0.0 5e-07 0.001 3 130 .. 2 150 .. 1 287 [. 0.87 Alignments for each domain: == domain 1 score: 18.1 bits; conditional E-value: 5e-07 EEEESTTSHHHHHHHHHCTTTSEEEEEE-TT..............T--TTSHHHHHHHH....HHH--SEEEE------HHHHH CS RmlD_sub_bind 3 ilvtGanGqlGseLakqlaeeglevlaltre..............eldltdaeavaell....keakpdvvvnaAAytavDkaE 68 i+vtG+ G++Gs+ + +l+e g++ + + + d d+++++e l ++ + ++v++++A a E 23726_FusoPortal_Gene_198 2 IIVTGGAGMIGSAFVWKLNEMGIKDILIVDKlrkedkwlnirkreYYDWIDKDNLKEWLackeNADNIEAVIHMGACSAT--TE 83 89******************999766664444779*******999899999999999997766566778*******9995..79 PP HSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-.S-....TTS-B-TTS----SSHHHHHHH CS RmlD_sub_bind 69 seeeaayavnaeavealAeaaaavgalLihvStDyVFd.Ge....kkrpYeeddetsPlnvYGrtKl 130 ++ + + n ++ l + +a+ +++ i+ S+ + Ge + ee ++ Pln YG +K 23726_FusoPortal_Gene_198 84 TDADFLMDNNFGYTKFLWNFCAEKNIKYIYASSAATYGmGElgynDDVSPEELQKLMPLNKYGYSKK 150 9999999***************************99963446665445567888999********96 PP >> ThiF ThiF family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.8 0.3 0.0002 0.42 25 49 .. 7 31 .. 2 34 .. 0.94 2 ? 2.1 0.0 0.047 98 118 147 .. 91 121 .. 55 163 .. 0.89 Alignments for each domain: == domain 1 score: 9.8 bits; conditional E-value: 0.0002 --SHHHHHHHHHHHHHTTTEEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxx RF ThiF 25 GaGglGsellknLalsGvgkltlvD 49 GaG +Gs + + L +G++ + +vD 23726_FusoPortal_Gene_198 7 GAGMIGSAFVWKLNEMGIKDILIVD 31 9***********************9 PP == domain 2 score: 2.1 bits; conditional E-value: 0.047 SS.HHHHHHHHHHHHHHT-EEEEEEEETTEE CS xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF ThiF 118 Dn.iearrlvnracvkkgiplieagtlgfkg 147 Dn + + + ++c++k+i++i+a+ ++++g 23726_FusoPortal_Gene_198 91 DNnFGYTKFLWNFCAEKNIKYIYASSAATYG 121 444888888899***********99988877 PP >> KR KR domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.7 0.2 0.00016 0.34 3 34 .. 2 33 .. 1 124 [. 0.79 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 0.00016 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS CS KR 3 ylitGGlGgLGlelarwlaekgarhlvllsRs 34 ++tGG+G +G +++ l e g + ++++ + 23726_FusoPortal_Gene_198 2 IIVTGGAGMIGSAFVWKLNEMGIKDILIVDKL 33 58************************998776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (333 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 800 (0.0478698); expected 334.2 (0.02) Passed bias filter: 458 (0.0274055); expected 334.2 (0.02) Passed Vit filter: 44 (0.00263284); expected 16.7 (0.001) Passed Fwd filter: 8 (0.000478698); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 0.27u 0.23s 00:00:00.50 Elapsed: 00:00:00.31 # Mc/sec: 3122.72 // [ok]