# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_203.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_203 [L=188] Description: # 218074 # 218637 # 1 # ID=1_203;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.289 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.3e-17 62.2 1.3 5.3e-17 62.2 1.3 2.4 2 CDP-OH_P_transf CDP-alcohol phosphatidyltransferase Domain annotation for each model (and alignments): >> CDP-OH_P_transf CDP-alcohol phosphatidyltransferase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 62.2 1.3 3.2e-21 5.3e-17 1 66 [] 2 74 .. 2 74 .. 0.84 2 ? -0.9 1.9 0.16 2.7e+03 12 12 .. 137 137 .. 76 174 .. 0.56 Alignments for each domain: == domain 1 score: 62.2 bits; conditional E-value: 3.2e-21 S-HHHHHHHHHHHHHHHHHGGGS-H..........HHHHHHHHHHHHHTTHHHHHHHHTT---HHHHHHHHHHH CS CDP-OH_P_transf 1 nlPnaiTllrlllsvlailllltyyp........lvlailllliasltDalDGklARrlnqvstlGkllDslaD 66 nlPn +T++r++l++ i++l ++ ++ +++++iasltD++DG++AR++n ++++Gk++D+laD 23726_FusoPortal_Gene_203 2 NLPNRLTMIRFILAIPFIIFLQYS-DsskyglifRLISLVIFVIASLTDFFDGYIARKYNLITDFGKIMDPLAD 74 69***********76666544333.269999976666666668******************************9 PP == domain 2 score: -0.9 bits; conditional E-value: 0.16 H CS CDP-OH_P_transf 12 l 12 + 23726_FusoPortal_Gene_203 137 V 137 1 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (188 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 702 (0.0420057); expected 334.2 (0.02) Passed bias filter: 254 (0.0151987); expected 334.2 (0.02) Passed Vit filter: 21 (0.00125658); expected 16.7 (0.001) Passed Fwd filter: 3 (0.000179512); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.24u 0.24s 00:00:00.48 Elapsed: 00:00:00.32 # Mc/sec: 1707.88 // [ok]