# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_211.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_211 [L=160] Description: # 224738 # 225217 # 1 # ID=1_211;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.342 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.23 9.1 3.3 0.26 9.0 3.3 1.0 1 Med5 Mediator complex subunit Med5 Domain annotation for each model (and alignments): >> Med5 Mediator complex subunit Med5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 3.3 1.6e-05 0.26 934 1070 .. 19 156 .. 14 159 .. 0.62 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 1.6e-05 Med5 934 eesehvldylfyflvlsdv.esqeeasellelledtsesskseakpkkeevklk.ekleqkqenvsdddfdmLfgenetslq 1013 ee + ++++ ++ dv e ++++ e +++ + + +s+ e ++ +++ ++ ek++ + + + df Lfg ts+ 23726_FusoPortal_Gene_211 19 EEKDNLINIVGNIVGEVDVvERENKNGEAFKVTNFSVVSKDDEGNKVYHNCSAYgEKSDIPK-DFKQGDFVKLFGQIRTSID 99 56666677777777655551444445567777666666666666666666666656666666.8889*************** PP Med5 1014 andeelassievl.e...kvkksnkilalkrdsfgvilhemkldadealeegdiskeeyek 1070 +n +e s+i +l + k k++ k + k+ds +l +k+ ++e+ e+ + +ke+ ++ 23726_FusoPortal_Gene_211 100 DNGKEH-SNIRILsSkllKAKEQMKGKEEKKDS---VLGAIKKYQAEEKEKPKEKKEATKE 156 ****96.67777755433444444444444444...5555555555555555555554444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (160 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1741 (0.104177); expected 334.2 (0.02) Passed bias filter: 496 (0.0296793); expected 334.2 (0.02) Passed Vit filter: 46 (0.00275251); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.26u 0.25s 00:00:00.51 Elapsed: 00:00:00.35 # Mc/sec: 1328.93 // [ok]