# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_212.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_212 [L=356] Description: # 225387 # 226454 # 1 # ID=1_212;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.6e-26 91.4 0.4 9.9e-26 90.6 0.4 1.4 1 AAA ATPase family associated with various cellul 2.6e-05 24.3 0.5 0.00011 22.3 0.1 2.0 2 AAA_2 AAA domain (Cdc48 subfamily) 0.0002 21.0 2.8 0.41 10.3 0.2 3.0 3 HTH_38 Helix-turn-helix domain 0.0002 21.3 0.1 0.00049 20.0 0.1 1.7 1 AAA_14 AAA domain 0.001 19.0 0.4 0.008 16.1 0.4 2.2 1 AAA_5 AAA domain (dynein-related subfamily) 0.0011 18.7 0.1 0.0022 17.8 0.1 1.4 1 AAA_3 ATPase family associated with various cellul 0.0018 18.4 0.0 0.0032 17.6 0.0 1.5 1 AAA_33 AAA domain 0.0022 18.4 0.0 0.0079 16.6 0.0 2.0 2 AAA_18 AAA domain 0.0023 17.6 0.0 0.0041 16.8 0.0 1.4 1 Viral_helicase1 Viral (Superfamily 1) RNA helicase ------ inclusion threshold ------ 0.026 13.7 0.2 0.084 12.0 0.2 1.8 1 RuvB_N Holliday junction DNA helicase ruvB N-termin 0.03 13.9 0.0 0.13 11.9 0.0 2.1 2 Thymidylate_kin Thymidylate kinase 0.036 13.4 0.3 0.72 9.1 0.0 2.5 2 KTI12 Chromatin associated protein KTI12 0.066 12.8 0.2 0.41 10.3 0.2 2.1 1 AAA_24 AAA domain 0.12 12.6 0.0 0.34 11.2 0.0 1.8 1 RNA_helicase RNA helicase 0.14 12.4 0.3 1.7 8.8 0.0 2.4 2 AAA_22 AAA domain 0.16 11.3 0.0 0.39 10.0 0.0 1.6 1 Mg_chelatase Magnesium chelatase, subunit ChlI Domain annotation for each model (and alignments): >> AAA ATPase family associated with various cellular activities (AAA) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 90.6 0.4 9.4e-29 9.9e-26 2 131 .. 104 235 .. 103 236 .. 0.95 Alignments for each domain: == domain 1 score: 90.6 bits; conditional E-value: 9.4e-29 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCCSSSTTHHHHHHHHHHHHHHHTS..TSEEEEEETGGGHCHHH.SSCSTHHH CS AAA 2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakeka..kpsilfiDEidalaksr.sgseseee 82 l+ G pG GKT +ak va+ l++++++++ +l+++ +g+++k+i ++fke+ ++ ++++DEid +a +r ++++ +e 23726_FusoPortal_Gene_212 104 LFEGLPGSGKTEAAKNVARLLDRSLFRVDFENLIDSKLGQTNKNIIKVFKEINMIPnaNKIVVLFDEIDVIALDRiNSNDIREM 187 899*******************************999**************966556677***************9999***** PP HHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSCHHHHSTSSEEEEETC CS AAA 83 ervvnqLlteldgvkkkeskvivigatnrpdkldpallrgRfdrkieie 131 rv +++l+eld++++ ++k+++i++tn ++++d+al+ +Rfd +i+++ 23726_FusoPortal_Gene_212 188 GRVTSTILRELDRLTDLNKKIVLIATTNLYSNFDKALV-RRFDAVINFN 235 **************************************.7******986 PP >> AAA_2 AAA domain (Cdc48 subfamily) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.3 0.1 1e-07 0.00011 5 101 .. 102 196 .. 99 223 .. 0.75 2 ? -1.6 0.0 2.2 2.3e+03 32 60 .. 324 350 .. 303 354 .. 0.62 Alignments for each domain: == domain 1 score: 22.3 bits; conditional E-value: 1e-07 -EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---...----THHHHHHHHHTTT-HHHHTTSEEEEETGGG------ CS AAA_2 5 silllgptgvGktelakalaellfvkkekkliradaselle...eeevehlvsrligappgyvgaeegGivllDEidKiapkes 85 ++l+ g g+Gkte+ak++a+ll+ ++l r+d +l+ ++ +++++ ++ + ++ +++ +vl+DEid ia + 23726_FusoPortal_Gene_212 102 KFLFEGLPGSGKTEAAKNVARLLD----RSLFRVDFENLIDsklGQTNKNIIKVFK--EINMIPNANKIVVLFDEIDVIALDRI 179 79*********************9....7**********99665555566655443..33455667778**********99777 PP -------HH.HHHHHHH CS AAA_2 86 sgadvSreg.VqrdLLq 101 +++d+ + g V +L+ 23726_FusoPortal_Gene_212 180 NSNDIREMGrVTSTILR 196 77777654435555555 PP == domain 2 score: -1.6 bits; conditional E-value: 2.2 ..-EEEEEGGG-------THHHHHHHHHT CS AAA_2 32 ekkliradaselleeeevehlvsrligap 60 e+ +++ + +l e+++ vsr + ++ 23726_FusoPortal_Gene_212 324 EEGFTVREIEKLKG--ESKSAVSRKLKKE 350 45566666666655..6666666655554 PP >> HTH_38 Helix-turn-helix domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.1 0.0 3 3.2e+03 26 33 .. 120 127 .. 116 127 .. 0.85 2 ! 10.3 0.2 0.0004 0.41 28 43 .. 185 200 .. 185 201 .. 0.94 3 ! 9.7 0.0 0.00064 0.67 13 43 .. 319 349 .. 314 350 .. 0.92 Alignments for each domain: == domain 1 score: -2.1 bits; conditional E-value: 3 HTH_38 26 IArrLgrs 33 +Ar+L+rs 23726_FusoPortal_Gene_212 120 VARLLDRS 127 89****98 PP == domain 2 score: 10.3 bits; conditional E-value: 0.0004 HTH_38 28 rrLgrspsTIsRElkR 43 r++gr +sTI REl R 23726_FusoPortal_Gene_212 185 REMGRVTSTILRELDR 200 89************88 PP == domain 3 score: 9.7 bits; conditional E-value: 0.00064 HTH_38 13 IerllaeGlslreIArrLgrspsTIsRElkR 43 I +l++eG ++reI ++ g s+s +sR lk+ 23726_FusoPortal_Gene_212 319 INQLHEEGFTVREIEKLKGESKSAVSRKLKK 349 889************************9985 PP >> AAA_14 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.0 0.1 4.7e-07 0.00049 8 90 .. 106 205 .. 102 250 .. 0.77 Alignments for each domain: == domain 1 score: 20.0 bits; conditional E-value: 4.7e-07 AAA_14 8 tGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe.kllelilek..lkeekktylflDEiqev............ 76 +G+ +GKT +k++++ l +s + +++++ d+kl +++ +++++++e + + +k ++++DEi + 23726_FusoPortal_Gene_212 106 EGLPGSGKTEAAKNVARLLD---RSLFRVDFENLIDSKLGQTNkNIIKVFKEInmIPNANKIVVLFDEIDVIaldrinsndire 186 688899*********96666...**********999887765437889999986444589999******988666666666666 PP AAA_14 77 .....pewekalkslvdeg 90 +++ + l +l d + 23726_FusoPortal_Gene_212 187 mgrvtSTILRELDRLTDLN 205 6666655555555555544 PP >> AAA_5 AAA domain (dynein-related subfamily) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.1 0.4 7.6e-06 0.008 2 138 .] 103 228 .. 102 228 .. 0.71 Alignments for each domain: == domain 1 score: 16.1 bits; conditional E-value: 7.6e-06 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHH CS AAA_5 2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsL 85 +l G pG+gK+e a+ +a++l r+++ v + + ++ l g+++ kn +++++ + +a ++ ++++DE++ + + +ns 23726_FusoPortal_Gene_212 103 FLFEGLPGSGKTEAAKNVARLLDRSLFRVDFENLIDSK-L-GQTN-KNIIKVFKEINMIPNA-NKIVVLFDEIDVIALDRINSN 182 6889*************************998855544.4.4444.3556666666666544.678888899997777777774 PP HHHHHSSEEE..-SSSEEE---.......-EEEEEESS--.-TT-TTHHHHTT- CS AAA_5 86 lslleerrllleeggelvkakndd.llerfrviatanpldrslnelspalrsRf 138 + e r+ ++el + + l +++ +iat+n + + ++al++Rf 23726_FusoPortal_Gene_212 183 -DIREMGRVTSTILRELD---RLTdLNKKIVLIATTNLYS----NFDKALVRRF 228 .44444444444444444...3333667799999999988....7799999998 PP >> AAA_3 ATPase family associated with various cellular activities (AAA) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.8 0.1 2.1e-06 0.0022 2 111 .. 103 215 .. 102 220 .. 0.70 Alignments for each domain: == domain 1 score: 17.8 bits; conditional E-value: 2.1e-06 AAA_3 2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkkGpvfan.llladeinr.appktqsall 83 l+eg+PG +kt ++k++a+ ld ++ r+ f +l+ s + G++ + + e++ p ++ ++l dei+ a +++s + 23726_FusoPortal_Gene_212 103 FLFEGLPGSGKTEAAKNVARLLDRSLFRVDFE-NLIDSKL-GQTNKNIIKVFKEINMIPNANKiVVLFDEIDViALDRINSNDI 184 589****************************6.6777775.4433333333333444444444167889998536788888888 PP AAA_3 84 eameerqvtvege...thklpepflvlatqn 111 m + t+ +e ++l+++ +++at n 23726_FusoPortal_Gene_212 185 REMGRVTSTILREldrLTDLNKKIVLIATTN 215 8888877777654111456777888888887 PP >> AAA_33 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.6 0.0 3e-06 0.0032 3 42 .. 104 146 .. 103 243 .. 0.63 Alignments for each domain: == domain 1 score: 17.6 bits; conditional E-value: 3e-06 AAA_33 3 llvGlpGsGKstlaerllkklg..avllssdtlrrrlfg.tdq 42 l+ GlpGsGK+ a+++++ l+ ++++ +l++ g t + 23726_FusoPortal_Gene_212 104 LFEGLPGSGKTEAAKNVARLLDrsLFRVDFENLIDSKLGqTNK 146 799***************9999888888888877744431333 PP >> AAA_18 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.6 0.0 7.6e-06 0.0079 3 85 .. 105 182 .. 104 217 .. 0.54 2 ? -2.1 0.0 4.7 5e+03 12 25 .. 192 213 .. 191 248 .. 0.55 Alignments for each domain: == domain 1 score: 16.6 bits; conditional E-value: 7.6e-06 AAA_18 3 ltGtpGvGKttlareLskrlgf..................gvnlrdvakenglllevdpealdeskrldedkldklldaleens 68 G pG+GKt+ a++++++l n+++v+ke ++ ++ +k++ +++e+ 23726_FusoPortal_Gene_212 105 FEGLPGSGKTEAAKNVARLLDRslfrvdfenlidsklgqtNKNIIKVFKEINMI----------------PNANKIVVLFDEI- 171 57*****************93325333333333333322222222222222222................2222333333333. PP AAA_18 69 saleegenlvvdghlae 85 +++ +d + ++ 23726_FusoPortal_Gene_212 172 ------DVIALDRINSN 182 ......34444444444 PP == domain 2 score: -2.1 bits; conditional E-value: 4.7 AAA_18 12 ttlareLskrlgf........g 25 +t+ reL +++ + 23726_FusoPortal_Gene_212 192 STILRELDRLTDLnkkivliaT 213 7778888776533232222222 PP >> Viral_helicase1 Viral (Superfamily 1) RNA helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.8 0.0 3.9e-06 0.0041 4 71 .. 106 171 .. 103 175 .. 0.89 Alignments for each domain: == domain 1 score: 16.8 bits; conditional E-value: 3.9e-06 Viral_helicase1 4 hGvpGcGKStlirkllrtsliltvnrptaelltegk.pklpnlsvrtvdsflmalvkstkgkililDEy 71 G pG+GK+ + ++++r l+ + r +e l ++k +++++ ++ ++++ m + + ++++DE+ 23726_FusoPortal_Gene_212 106 EGLPGSGKTEAAKNVARL-LDRSLFRVDFENLIDSKlGQTNKNIIKVFKEINMIPNAN--KIVVLFDEI 171 79****************.888899999999999999999999999999999988875..89999**97 PP >> RuvB_N Holliday junction DNA helicase ruvB N-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.2 8e-05 0.084 32 188 .. 83 246 .. 53 258 .. 0.76 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 8e-05 RuvB_N 32 vkeklkifieaakkreealdhvllyGpPGlGkttlakiiakelgvnl.kitsgPvleka.gdlaalltnleekdvlfideihrl 113 ++e++k +i+a + + ++ l+ G PG Gkt ak +a+ l+ +l ++ +++ + g+ + ++ k++ +i + ++ 23726_FusoPortal_Gene_212 83 ITEDIKGIINAV-NHNVGINKFLFEGLPGSGKTEAAKNVARLLDRSLfRVDFENLIDSKlGQTNKNIIKV-FKEINMIPNANKI 164 566666666654.56788999**********************987527777777875414443333333.3578889999999 PP RuvB_N 114 sraveevlysamedfrldivigkGpsarsikldlpkft.......lvgattragllssPlrdrfgivarlefyeeeeleeiv 188 +e+ a++ ++ + + + G+ + +i +l+++t l+++t + + + l rf v +++ y++e+l e+ 23726_FusoPortal_Gene_212 165 VVLFDEIDVIALDRINSNDIREMGRVTSTILRELDRLTdlnkkivLIATTNLYSNFDKALVRRFDAVINFNRYSNEDLIEVA 246 99999999999999998888888988888877766655444444366666678999999**************999998875 PP >> Thymidylate_kin Thymidylate kinase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 0.0 0.00012 0.13 1 56 [. 105 161 .. 105 181 .. 0.75 2 ? -2.4 0.0 2.9 3e+03 85 118 .. 245 278 .. 237 280 .. 0.70 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 0.00012 EEESTTSSHHHHHHHHHHHHHHTTE.EEEESSS.TTSHHHHHHHHHHH..TCS---HHH CS Thymidylate_kin 1 iEGlDGaGKttqaellkerlkeegikvvltrep.ggteiGekirelll..keeeleeqt 56 +EGl G+GKt a+++++ l+++ + + +e+ ++++G++ +++++ ke ++ + + 23726_FusoPortal_Gene_212 105 FEGLPGSGKTEAAKNVARLLDRSLFR--VDFENlIDSKLGQTNKNIIKvfKEINMIPNA 161 8*******************999976..5555524677777777777766666666655 PP == domain 2 score: -2.4 bits; conditional E-value: 2.9 EES-HHHHHH..HHHTTTTTTCHHHHHHGGGTTSE- CS Thymidylate_kin 85 vdRylfSsla..YqgakegvdldlvlslnedvllkP 118 v+ y+fSs + ++g + d +l++++ ++++ P 23726_FusoPortal_Gene_212 245 VAEYYFSSFIksFKGTS--KDTRLFKKILKTAPKLP 278 56688888863344544..48999999999988766 PP >> KTI12 Chromatin associated protein KTI12 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.1 0.0 0.00069 0.72 5 29 .. 104 128 .. 103 220 .. 0.81 2 ? 1.8 0.1 0.12 1.2e+02 51 73 .. 330 352 .. 308 353 .. 0.84 Alignments for each domain: == domain 1 score: 9.1 bits; conditional E-value: 0.00069 EEE--TTSSHHHHHHHHHHHHHHTT CS KTI12 5 vltGlPssGKstrakeLakaleeek 29 ++ GlP sGK+ +ak++a+ l + 23726_FusoPortal_Gene_212 104 LFEGLPGSGKTEAAKNVARLLDRSL 128 678****************998843 PP == domain 2 score: 1.8 bits; conditional E-value: 0.12 GGHHHHHHHHHHHHHHHHTT.SE CS KTI12 51 akekalRsslrsavkrdLskekv 73 ++ ++l+++ +sav+r+L+ke+v 23726_FusoPortal_Gene_212 330 REIEKLKGESKSAVSRKLKKEEV 352 567899**************976 PP >> AAA_24 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 0.2 0.00039 0.41 6 130 .. 104 213 .. 101 221 .. 0.64 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 0.00039 AAA_24 6 liyGpsgiGKTtlakel....gpkplfidtekGlksldadkfpdieswedfldevvelaaeladyk.tlviDtideleelclae 84 l G +g+GKT ak+ + + +d+e+ +s + ++i +++ +e++ + ++ k ++ +D id + 23726_FusoPortal_Gene_212 104 LFEGLPGSGKTEAAKNVarllDRSLFRVDFENLIDSKLGQTNKNI---IKVFKEINMI---PNANKiVVLFDEIDVI------A 175 55688************99966666679***96666666665544...4444444444...4444404556888777......3 PP AAA_24 85 virqnekaeskedkgdgkGygelaeefrrllkklqelrknvifiah 130 ++r n++ + g+++ + r l++l++l+k +++ia 23726_FusoPortal_Gene_212 176 LDRINSNDIRE--------MGRVTSTILRELDRLTDLNKKIVLIAT 213 33333331122........367777777777777777777777775 PP >> RNA_helicase RNA helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 0.0 0.00033 0.34 3 106 .. 105 215 .. 103 216 .. 0.76 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 0.00033 RNA_helicase 3 lyGpsgeGKStlakeLakallkkl............klkkkdsvysrnpeddfwdgYtgqevvvidDfgqvkdee.npsdlael 73 + G +g GK+ +ak++a+ l ++l +++++++ +e ++ + ++ vv++d++ + + n +d+ e+ 23726_FusoPortal_Gene_212 105 FEGLPGSGKTEAAKNVARLLDRSLfrvdfenlidskLGQTNKNIIKVFKEINMIPN-ANKIVVLFDEIDVIALDRiNSNDIREM 187 7899***********88888877799999999999533333455445555555554.4589999999*99999999999***** PP RNA_helicase 74 irlvsstpyplnmasleekgtlftSkvvivtsN 106 r+ s+ +l+ +k+ v+i+t+N 23726_FusoPortal_Gene_212 188 GRVTSTILRELDRLTDLNKK-----IVLIATTN 215 ***99988888766666664.....66677777 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.8 0.0 0.0016 1.7 12 43 .. 107 129 .. 103 141 .. 0.80 2 ? 0.2 0.2 0.77 8e+02 93 134 .. 164 217 .. 150 220 .. 0.65 Alignments for each domain: == domain 1 score: 8.8 bits; conditional E-value: 0.0016 AAA_22 12 GesGtGKTtllrrlleqldeeakaeeerpevv 43 G +G+GKT ++++++ l +++++ 23726_FusoPortal_Gene_212 107 GLPGSGKTEAAKNVARLL---------DRSLF 129 99**************99.........45554 PP == domain 2 score: 0.2 bits; conditional E-value: 0.77 AAA_22 93 elliiDEaqhlr.....s..........eealeeLrsllnlsrkgvqliLvGtpelr 134 +++ DE++ + s ++l+eL +l + + +++L+ t++l+ 23726_FusoPortal_Gene_212 164 IVVLFDEIDVIAldrinSndiremgrvtSTILRELDRLTD---LNKKIVLIATTNLY 217 5788888888765555414555565555777777766655...66677788777775 PP >> Mg_chelatase Magnesium chelatase, subunit ChlI # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.0 0.0 0.00037 0.39 20 48 .. 98 126 .. 88 149 .. 0.86 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 0.00037 Mg_chelatase 20 aGgHnlllvGppGsGKtmlakrlpsllpp 48 G ++l+ G pGsGKt ak ++ ll + 23726_FusoPortal_Gene_212 98 VGINKFLFEGLPGSGKTEAAKNVARLLDR 126 477789*****************999865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (356 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 642 (0.0384155); expected 334.2 (0.02) Passed bias filter: 392 (0.0234562); expected 334.2 (0.02) Passed Vit filter: 52 (0.00311154); expected 16.7 (0.001) Passed Fwd filter: 16 (0.000957396); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 16 [number of targets reported over threshold] # CPU time: 0.33u 0.28s 00:00:00.61 Elapsed: 00:00:00.38 # Mc/sec: 2723.43 // [ok]