# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_229.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_229 [L=634] Description: # 247250 # 249151 # -1 # ID=1_229;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.312 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-160 533.6 0.5 3.7e-160 533.2 0.5 1.1 1 GIDA Glucose inhibited division protein A 3.1e-72 243.1 1.7 6.8e-72 241.9 1.7 1.6 1 GIDA_assoc GidA associated domain 2.5e-09 36.9 0.0 4.8e-09 36.0 0.0 1.5 1 FAD_oxidored FAD dependent oxidoreductase 3.9e-08 32.8 0.2 8.4e-08 31.7 0.2 1.6 1 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase 6.5e-06 25.4 2.7 0.00077 18.5 1.4 2.3 2 FAD_binding_2 FAD binding domain 0.0022 17.2 1.9 1.3 8.1 0.1 3.1 3 Pyr_redox_3 Pyridine nucleotide-disulphide oxidoreductase ------ inclusion threshold ------ 0.012 14.8 0.2 0.033 13.4 0.1 1.7 2 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain 0.026 14.0 1.0 4 6.8 0.7 2.3 2 DAO FAD dependent oxidoreductase 0.03 13.4 0.9 0.064 12.4 0.2 1.9 2 Thi4 Thi4 family 0.04 14.4 0.3 0.04 14.4 0.3 2.5 1 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase 0.077 11.7 0.9 0.49 9.1 0.3 2.0 2 Trp_halogenase Tryptophan halogenase 0.21 10.5 1.3 0.4 9.6 1.3 1.5 1 Lycopene_cycl Lycopene cyclase protein 0.56 8.7 6.5 1.5 7.4 1.0 3.5 4 HI0933_like HI0933-like protein 3.5 7.6 6.4 0.78 9.7 0.4 2.6 3 DUF520 Protein of unknown function (DUF520) Domain annotation for each model (and alignments): >> GIDA Glucose inhibited division protein A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 533.2 0.5 3.1e-163 3.7e-160 1 392 [] 5 403 .. 5 403 .. 0.98 Alignments for each domain: == domain 1 score: 533.2 bits; conditional E-value: 3.1e-163 CEEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEE-TTHHHHHHHHHHHT-SHHHHHHHHEEEEEEESTTS-CC CS GIDA 1 dviViGgGhAGceAAlaaarlGakvlLithkldtiaelsCnpsiggiakgllvrEidalggliikaadkagiqfrilNrskGpa 84 d+iV+GgGhAGceAAla+ar+G+k++++t +ldti+ +sCnps+gg+ak++l rEidalgg++++ +dk+ iq+r+lN++kGpa 23726_FusoPortal_Gene_229 5 DIIVVGGGHAGCEAALASARMGMKTAIFTISLDTIGVMSCNPSLGGPAKSHLAREIDALGGEMGRNIDKTFIQIRVLNTRKGPA 88 79********************************************************************************** PP C-EEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECT....TEEEEEEETTS-EEEECEEEE--TT-BT-EEEETTEEEE CS GIDA 85 vralraqvdrelyskevteklenepnleiieeeveelivee....kkvkgvvtedgetikakavviatGtflkgkihigekels 164 vr+lraq+d+ +y++e++++le+++nl++i+++v+el+vee k +kg++ ++g +++akav+iatGtfl+g ihige ++s 23726_FusoPortal_Gene_229 89 VRSLRAQADKMAYANEMKKTLEHTDNLSVIQGMVSELVVEEengkKIIKGIKIREGLEYRAKAVIIATGTFLRGLIHIGEINFS 172 ***************************************999998899************************************ PP SSCTTC--B-THHHHHHHTT--EEEEEEEE--EEEGGGS-TTTSEEE---.SS-B-SSSSSSST...CG----EEEEE--HHHH CS GIDA 165 aGrlgeltseglseslkelgfellrlktgtppridkesidfskleeqsgd.kegeefsylnkpl...nkeqvecfltatneath 244 aGr+gel+se+l sl+++g +l r+ktgtp rid+++id+s+leeq+gd +++ +fs +k+ +++q++c++++tne+ h 23726_FusoPortal_Gene_229 173 AGRMGELSSEELPLSLEKIGLKLERFKTGTPTRIDGRTIDYSVLEEQPGDkSQVLKFSNRTKDEdalSRRQISCYIAHTNEKVH 256 **************************************************777888888888776667**************** PP HHHHCTCCC-T.T----B--S-CCC-SSTCCCCCCSTT-S--EEEEEESSTT--EEEEET----S-HHHHHHHHTTSTT-TT-- CS GIDA 245 kiikenlkksaklfegcieelgprycpsiedkivrladkeshqvfLepegleteliylvgfstslpeevqkevlrsipGLenae 328 +ii++ ++s+ lf+g+i++lgprycpsiedki+r +dk++h++fLe+eg et++iyl g+s+slp++vq+e+l++i+G+ena+ 23726_FusoPortal_Gene_229 257 EIIRNAKERSP-LFNGTIQGLGPRYCPSIEDKIFRYPDKNQHHLFLEREGYETNEIYLGGLSSSLPVDVQEEMLKNIKGFENAK 339 ***********.************************************************************************ PP EEE--EEEEEEEE-GGGB-TTSBBSSSBTEEE-CGGGTB-SHHHHHHHHHHHHHHHHHHHCTS- CS GIDA 329 ivrpGyaieydyvdprqllntLetkkvkgLflAGqinGteGYeEaaaqGllAGinaarkakgke 392 i+r++yaieydyv+p++++ tLe+++v++LflAGqinGt+GYeEa aqGl+AGina+rk++++e 23726_FusoPortal_Gene_229 340 IMRYAYAIEYDYVPPEEIKYTLESRTVENLFLAGQINGTSGYEEAGAQGLMAGINAVRKLRNEE 403 ************************************************************9975 PP >> GIDA_assoc GidA associated domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 241.9 1.7 5.7e-75 6.8e-72 1 209 [. 405 624 .. 405 625 .. 0.94 Alignments for each domain: == domain 1 score: 241.9 bits; conditional E-value: 5.7e-75 ----TTT-HHHHHHHHHHHH--SS-B-CCCB--TTTCCC-CCCHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHCCEE CS GIDA_assoc 1 lilkRseaYiGVLiDDLvtkgvkEPYRmfTSRaEyRlllRaDnAdlRLtekgrelglvseeryekfeekkeeieelkellkstk 84 +il+R+++YiG LiDDLv+kg++EPYRmfT+R+EyRl lR+DnAdlRLt++g+elglv ee+y+++e+kk++++ ++e+l +t+ 23726_FusoPortal_Gene_229 405 VILDRADSYIGTLIDDLVSKGTNEPYRMFTARSEYRLYLREDNADLRLTKLGYELGLVPEEEYQRVEKKKKDVKIITEILAKTN 488 589********************************************************************************* PP E..HHHHHHHH.HHHT----....EHHHHCTTST--HHHHHCCHHHH......HHHSCHHHHHHHHHHHCHHHHHHHHHHCHHH CS GIDA_assoc 85 l..kseewkkllekkeskkl....slaellkrpevsledlleelpee......eeeseeeleqveieakYegyiekqeeeiekl 156 + ++ ++++ l k++++++ +l+ell+rpevs+ed+ + ++ee + ++++++ qvei++kYegyi++ + iek 23726_FusoPortal_Gene_229 489 VgpSNPRVNEILLKRRENPIkdgsTLLELLRRPEVSFEDI-KYISEEirgidlQGYDHDTTYQVEITVKYEGYINRALKMIEKH 571 *876677777766666666667889***************.7777778999988888888************************ PP HHHHTSB--TTS-CCCSTT--CHHHHHHHHH--SCHHHHTTSTTS-HHHHHHH CS GIDA_assoc 157 kkeenlkipedldyskikgLskearekLkkvrPetlgqAsrisGvtpaaisvL 209 k++en+kip d+dy+++k++ kea++kLk+++P ++gqAsrisGv+pa+i+++ 23726_FusoPortal_Gene_229 572 KSMENKKIPVDIDYDDLKTIPKEAKDKLKRIKPINIGQASRISGVSPADIQAI 624 **************************************************987 PP >> FAD_oxidored FAD dependent oxidoreductase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.0 0.0 4e-12 4.8e-09 1 165 [. 5 180 .. 5 297 .. 0.68 Alignments for each domain: == domain 1 score: 36.0 bits; conditional E-value: 4e-12 FAD_oxidored 1 DvvVvGGgpaGvaAAiaAaraGakvlLve.ergvlGGlltsglvatdignkaeeqvvtgiareflerlrq..........rgga 73 D++VvGGg aG+ AA+a+ar+G k+++ + +G ++ + ++ + + + ++ + + +e+ +++++ r+g 23726_FusoPortal_Gene_229 5 DIIVVGGGHAGCEAALASARMGMKTAIFTiSLDTIGVMSCNPSLGGPAKSHLAR-EIDALGGEMGRNIDKtfiqirvlntRKGP 87 9************************99875667777777666655555555444.33333333333333311111001112222 PP FAD_oxidored 74 rlkkrskwn.....tfepevakavleeml.aeagvtvllntrlveveke..gkr.iesvtveskegrktirAkvfiDATgd..G 146 + + ++++ +++ l + +++ v+ + + + v+ e gk+ i+++++++ + ++rAk +i ATg 23726_FusoPortal_Gene_229 88 A-------VrslraQADKMAYANEMKKTLeHTDNLSVIQGMVSELVVEEenGKKiIKGIKIRE---GLEYRAKAVIIATGTflR 161 1.......1222335788888888888888889*****99998888886323448******75...899999999999885224 PP FAD_oxidored 147 dlaalaGvpyrvGresree 165 l++ ++++ Gr ++ 23726_FusoPortal_Gene_229 162 GLIHIGEINFSAGRMGELS 180 6778888888888877764 PP >> Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.7 0.2 7.1e-11 8.4e-08 1 107 [. 4 158 .. 4 186 .. 0.66 Alignments for each domain: == domain 1 score: 31.7 bits; conditional E-value: 7.1e-11 ESEEEE--SHHHHHHHHHHHHHTS-EEEEE........TTHHHHHHSHHHHHHHHHHHHHHH..........E........... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxx..........x........... RF Pyr_redox_2 1 kdvvviGgGpAGlaaaltlaqagakvtlve........legtclnggcllskallgaaedae..........i........... 55 +d++v+GgG+AG++aal a+ g+k++++ + +gg+ s+ ++++ + + i 23726_FusoPortal_Gene_229 4 FDIIVVGGGHAGCEAALASARMGMKTAIFTisldtigvMSCNPSLGGPAKSHLAREIDALGGemgrnidktfIqirvlntrkgp 87 599**************************8744344443334444444444444444444447766666655155666777777 PP ......................HHHHHHHHHHHHHHHHTTEEEEECEEEEEETCEEETCEEEEEESEEEE---E CS ......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF Pyr_redox_2 56 ......................evvkklnqgielllgeevvkidpgkkkvklekkkegkeekiaydklviAtGs 107 e++++l+ i+ + e vv+ ++gkk +k k ++ ++ +++++iAtG 23726_FusoPortal_Gene_229 88 avrslraqadkmayanemkktlEHTDNLSV-IQGMVSELVVEEENGKKIIKGIKI--REGLEYRAKAVIIATGT 158 778888887666666555544444443332.344444346666666655665544..57889***********5 PP >> FAD_binding_2 FAD binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.5 1.4 6.5e-07 0.00077 1 28 [. 5 32 .. 5 36 .. 0.95 2 ! 5.8 0.0 0.0049 5.8 165 204 .. 113 161 .. 86 195 .. 0.73 Alignments for each domain: == domain 1 score: 18.5 bits; conditional E-value: 6.5e-07 SEEEE--SHHHHHHHHHHHHTTT-EEEE CS FAD_binding_2 1 DviViGsGlAGLaAAleaaeaGlkvavv 28 D+iV+G+G AG+ AAl+ a+ G k+a+ 23726_FusoPortal_Gene_229 5 DIIVVGGGHAGCEAALASARMGMKTAIF 32 9************************997 PP == domain 2 score: 5.8 bits; conditional E-value: 0.0049 EEEEECTTEEEEEEEEETTTTCEE.........EEEESEEEE-----GG CS FAD_binding_2 165 deLivedgrvtGavvenpesgrev.........rirakavvlatgGfgr 204 d+L v +g v+ vve+++++++ ++rakav++atg f r 23726_FusoPortal_Gene_229 113 DNLSVIQGMVSELVVEEENGKKIIkgikireglEYRAKAVIIATGTFLR 161 4555555678888888774444446666666779************987 PP >> Pyr_redox_3 Pyridine nucleotide-disulphide oxidoreductase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.1 0.1 0.0011 1.3 166 193 .. 5 32 .. 1 45 [. 0.86 2 ! 7.1 0.0 0.0022 2.6 69 135 .. 87 159 .. 71 163 .. 0.56 3 ? -2.2 0.0 1.4 1.7e+03 5 30 .. 384 410 .. 384 418 .. 0.80 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 0.0011 Pyr_redox_3 166 kvvViGgknSavDaAlelvrkgaeVtvv 193 +++V+Gg+ +++aAl +r+g++ ++ 23726_FusoPortal_Gene_229 5 DIIVVGGGHAGCEAALASARMGMKTAIF 32 7899999999999999999999987665 PP == domain 2 score: 7.1 bits; conditional E-value: 0.0022 Pyr_redox_3 69 pafslkeeklsrkealeYlrevaesf.elpiklfeeVesvkkedeg.fe...vetske.tyeAkkviiAtGef 135 pa+ + ++ ++ +++ +++ e+ +l++ + e v +e++g + ++ +++ +y+Ak viiAtG f 23726_FusoPortal_Gene_229 87 PAVRSLRAQADKMAYANEMKKTLEHTdNLSVIQGMVSELVVEEENGkKIikgIKIREGlEYRAKAVIIATGTF 159 555555555555555555555544431455544433343444333313301133444579***********99 PP == domain 3 score: -2.2 bits; conditional E-value: 1.4 Pyr_redox_3 5 aGPaGlaaaiel.kkagledylilEkg 30 aG+ Gl a+i++ +k+ e+ +il+++ 23726_FusoPortal_Gene_229 384 AGAQGLMAGINAvRKLRNEEPVILDRA 410 8********976256667889999986 PP >> AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 0.1 2.7e-05 0.033 30 63 .. 5 38 .. 1 49 [. 0.89 2 ? -3.5 0.0 4 4.8e+03 5 31 .. 595 621 .. 594 623 .. 0.85 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 2.7e-05 EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHH CS AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDvrpar 63 ++v+GgG aG +A+ +++++g k+ ++ ++ ++ 23726_FusoPortal_Gene_229 5 DIIVVGGGHAGCEAALASARMGMKTAIFTISLDT 38 689***********************99887765 PP == domain 2 score: -3.5 bits; conditional E-value: 4 HHHHCSCGCTSEEETTCEETCB---EE CS AlaDh_PNT_C 5 aakalekffggkgtlaGgvpgvepakv 31 a ++l++ ++ ++ a++++gv+pa + 23726_FusoPortal_Gene_229 595 AKDKLKRIKPINIGQASRISGVSPADI 621 5567899999999999********976 PP >> DAO FAD dependent oxidoreductase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 0.7 0.0033 4 1 24 [. 5 30 .. 5 36 .. 0.85 2 ? 5.3 0.0 0.01 12 141 211 .. 94 165 .. 57 272 .. 0.78 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.0033 EEEEECTSHHHHHHHHHHHHTT..EE CS DAO 1 dvviiGGGiiGlstAyeLarrg..Vt 24 d++++GGG +G+ +A++ ar g ++ 23726_FusoPortal_Gene_229 5 DIIVVGGGHAGCEAALASARMGmkTA 30 8***************9988776644 PP == domain 2 score: 5.3 bits; conditional E-value: 0.01 EEEEHHHHHHHHHHHH.HHTT-EEEESECEEEE..EEEE..TCEEEEE.EECTEEEEEEEEEEE--GGGHH.HHHTTC CS DAO 141 gqvdpakltaalaraa.ealGveilegtevtgl..eeed..gkvwgve.rttpgendaadavVnaaGawsd.llgllk 211 +q+d ++++ + +++ + +++g v +l eee+ + ++g++ r + g + +a+av++a+G + + l+ + 23726_FusoPortal_Gene_229 94 AQADKMAYANEMKKTLeHTDNLSVIQG-MVSELvvEEENgkKIIKGIKiR-E-GLEYRAKAVIIATGTFLRgLI---H 165 677788888888888734455788888.4555423444444223333232.2.66634599******9977655...3 PP >> Thi4 Thi4 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.2 5.4e-05 0.064 17 53 .. 3 38 .. 1 50 [. 0.88 2 ? -3.1 0.0 2.9 3.4e+03 61 80 .. 120 139 .. 91 152 .. 0.59 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 5.4e-05 EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS- CS Thi4 17 esDvvivGaGssGLtaayylakkpdlkvailersvsp 53 e D+++vG+G +G aa a+ ++k+ai+ s+ 23726_FusoPortal_Gene_229 3 EFDIIVVGGGHAGCEAALASARM-GMKTAIFTISLDT 38 78****************99999.******9888755 PP == domain 2 score: -3.1 bits; conditional E-value: 2.9 STTBSEEEEETTTHHHHHHT CS Thi4 61 GqlfsaivvrkpakelLdel 80 G++ + +v ++++k++++ + 23726_FusoPortal_Gene_229 120 GMVSELVVEEENGKKIIKGI 139 33333333333344444444 PP >> Pyr_redox Pyridine nucleotide-disulphide oxidoreductase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 0.3 3.3e-05 0.04 2 29 .. 6 33 .. 5 50 .. 0.90 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 3.3e-05 EEEECSSHHHHHHHHHHHHTTSEEEEEE CS Pyr_redox 2 vvvvGgGyiglElAgalaelgkkVtvve 29 ++vvGgG g+E+A a a++g k+ ++ 23726_FusoPortal_Gene_229 6 IIVVGGGHAGCEAALASARMGMKTAIFT 33 89*******************9998765 PP >> Trp_halogenase Tryptophan halogenase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.1 0.3 0.00041 0.49 1 39 [. 5 42 .. 5 49 .. 0.90 2 ? 0.8 0.0 0.13 1.6e+02 150 209 .. 95 158 .. 79 166 .. 0.86 Alignments for each domain: == domain 1 score: 9.1 bits; conditional E-value: 0.00041 EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS--- CS Trp_halogenase 1 kivivGGGtaGwlaAaalakalkgklevtlveseeigtv 39 +i++vGGG aG aA a a+++ k+++ + ++ig++ 23726_FusoPortal_Gene_229 5 DIIVVGGGHAGCEAALASARMG-MKTAIFTISLDTIGVM 42 69******************99.6699999999999976 PP == domain 2 score: 0.8 bits; conditional E-value: 0.13 EE-HHHHHHHHHHHHHHC.T-EEEE--EEEEEE-T.TS-..EEEEEETTS-EEE-SEEEE-SGG CS Trp_halogenase 150 hldaalyakfLrrvaear.Gvtrvegkvvevqlde.dgr..veslrledgreveadlfiDcsGf 209 + d+ ya+ +++ e+ ++ +++g v e +++e +g+ ++++++ +g e+ a +i ++G 23726_FusoPortal_Gene_229 95 QADKMAYANEMKKTLEHTdNLSVIQGMVSELVVEEeNGKkiIKGIKIREGLEYRAKAVIIATGT 158 68999999999999988779*********9998887664449***********99999999995 PP >> Lycopene_cycl Lycopene cyclase protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.6 1.3 0.00033 0.4 1 28 [. 5 30 .. 5 162 .. 0.74 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 0.00033 Lycopene_cycl 1 DvvviGaGpAglslAarlteakpglkvv 28 D++v+G+G Ag+ A + a++g+k 23726_FusoPortal_Gene_229 5 DIIVVGGGHAGCEAALAS--ARMGMKTA 30 9************99999..44444433 PP >> HI0933_like HI0933-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 1.0 0.0012 1.5 1 29 [. 4 32 .. 4 35 .. 0.92 2 ? -0.3 0.1 0.27 3.2e+02 134 163 .. 128 157 .. 100 159 .. 0.72 3 ? 0.3 0.0 0.17 2.1e+02 368 384 .. 359 375 .. 354 381 .. 0.85 4 ? -0.2 0.0 0.25 3e+02 8 33 .. 384 411 .. 383 415 .. 0.79 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.0012 -SEEEE--SHHHHHHHHHHHHTT--EEEE CS HI0933_like 1 kdviviGgGaAGlmaAisaakrgakVlll 29 +d+iv+GgG AG aA++ a+ g k++++ 23726_FusoPortal_Gene_229 4 FDIIVVGGGHAGCEAALASARMGMKTAIF 32 589*******************9999886 PP == domain 2 score: -0.3 bits; conditional E-value: 0.27 EEECETTE.EEEEE.TTEEEEESEEEE--- CS HI0933_like 134 svekeedgkfrvktkseeeleadklvlAtG 163 + e+ ++ +k++++ e++a+++++AtG 23726_FusoPortal_Gene_229 128 EEENGKKIIKGIKIREGLEYRAKAVIIATG 157 444445555678888999***********9 PP == domain 3 score: 0.3 bits; conditional E-value: 0.17 TT-BBTTSTTEEE-GGG CS HI0933_like 368 ktmeskkvpgLffaGEv 384 t+es++v++Lf+aG + 23726_FusoPortal_Gene_229 359 YTLESRTVENLFLAGQI 375 59*************76 PP == domain 4 score: -0.2 bits; conditional E-value: 0.25 -SHHHHHHHHHH..HHTT--EEEE-SSS CS HI0933_like 8 gGaAGlmaAisa..akrgakVlllekak 33 +Ga Glma i+a + r+++ ++l++a+ 23726_FusoPortal_Gene_229 384 AGAQGLMAGINAvrKLRNEEPVILDRAD 411 8**********96656677777777765 PP >> DUF520 Protein of unknown function (DUF520) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.2 0.1 0.58 6.9e+02 99 114 .. 125 140 .. 88 153 .. 0.69 2 ? -3.6 0.1 8.1 9.7e+03 94 124 .. 226 259 .. 205 266 .. 0.47 3 ? 9.7 0.4 0.00066 0.78 88 147 .. 570 629 .. 555 632 .. 0.88 Alignments for each domain: == domain 1 score: 0.2 bits; conditional E-value: 0.58 DUF520 99 egidkekakkivklik 114 +++e+ kki+k ik 23726_FusoPortal_Gene_229 125 LVVEEENGKKIIKGIK 140 4567788888888777 PP == domain 2 score: -3.6 bits; conditional E-value: 8.1 DUF520 94 evklkegidkeka...kkivklikdsklkvqaqi 124 ++k+ + ++e+a ++i+ i ++ kv+ i 23726_FusoPortal_Gene_229 226 VLKFSNRTKDEDAlsrRQISCYIAHTNEKVHEII 259 3444444444433333455555555555555544 PP == domain 3 score: 9.7 bits; conditional E-value: 0.00066 DUF520 88 gkkvkqevklkegidkekakkivklikdsklkvqaqiqgdevRvtgkkrDdLQaviallk 147 ++k ++ k+ id ++ k i k+ kd+ +++ g++ R++g + d+Qa++ +lk 23726_FusoPortal_Gene_229 570 KHKSMENKKIPVDIDYDDLKTIPKEAKDKLKRIKPINIGQASRISGVSPADIQAILIYLK 629 4555666788889******************************************99998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (634 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 641 (0.0383557); expected 334.2 (0.02) Passed bias filter: 515 (0.0308162); expected 334.2 (0.02) Passed Vit filter: 60 (0.00359023); expected 16.7 (0.001) Passed Fwd filter: 14 (0.000837721); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 14 [number of targets reported over threshold] # CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.42 # Mc/sec: 4388.23 // [ok]