# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_234.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_234 [L=215] Description: # 254227 # 254871 # -1 # ID=1_234;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.265 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.2e-87 291.3 0.3 5e-87 291.1 0.3 1.0 1 Peptidase_C15 Pyroglutamyl peptidase Domain annotation for each model (and alignments): >> Peptidase_C15 Pyroglutamyl peptidase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 291.1 0.3 3e-91 5e-87 1 200 [. 2 200 .. 2 203 .. 0.99 Alignments for each domain: == domain 1 score: 291.1 bits; conditional E-value: 3e-91 EEEEEEEE---TT-S--HHHHHHHHHTTEEETTEEEEEEEE-SSCCHHHHHHHHHHHHH--SEEEEEEE-TT-SSEEEE-EEES CS Peptidase_C15 1 kkvLvtGfdPfgkekinPaeeaakeldgkeiaeatvvkrelPtvfkkaadvlkkaleeikpdiviaiGqaggrsaitveRvain 84 kk+LvtGfdPfg+ekinPa e++k l+ k+i++ +++ +e+Ptv+kk+++ + k +++ +pd++++iGqaggr+ i++eRvain 23726_FusoPortal_Gene_234 2 KKILVTGFDPFGGEKINPALEVIKLLP-KKIGDNEIKILEIPTVYKKSIEKIDKEIKNYNPDYILSIGQAGGRTDISIERVAIN 84 69*************************.******************************************************** PP -BE-SS--TTS---CSB-SSTTS-SEEE--S-HHHHHHHHHHTT--EEEES---SSHHHHHHHHHHHHHHHHS--SEEEEEEE- CS Peptidase_C15 85 ldDaRipDnegkqpidekieedgpaaYfstlPvkamvkalreaGiPaavsnsaGtfvCnyllykvlhlsdkkgpplkaGfihvP 168 +dD Ri+Dneg+qpideki dg++aYfstlP+ka+ ++ ++GiPa++sn+aGtfvCn+++y+v +l++kk+ +k+Gfih+P 23726_FusoPortal_Gene_234 85 IDDFRIKDNEGNQPIDEKIYLDGDNAYFSTLPIKAIQSEITKNGIPASISNTAGTFVCNHVFYGVRYLIEKKYKGKKSGFIHIP 168 ************************************************************************************ PP B-GGGCCCHCCC-B--HHHHHHHHHHHHHHHH CS Peptidase_C15 169 ylpeqvvdktelpslslekevkaieaaieaav 200 ylpeq++ k ++ps+sl++++k+i++aie++ 23726_FusoPortal_Gene_234 169 YLPEQIIGKADTPSMSLDNILKGITIAIEIIF 200 *****************************987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (215 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 412 (0.0246529); expected 334.2 (0.02) Passed bias filter: 313 (0.0187291); expected 334.2 (0.02) Passed Vit filter: 36 (0.00215414); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.23u 0.23s 00:00:00.46 Elapsed: 00:00:00.31 # Mc/sec: 2016.17 // [ok]