# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_241.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_241 [L=590] Description: # 260692 # 262461 # -1 # ID=1_241;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.339 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-91 304.6 0.0 4.5e-91 304.1 0.0 1.2 1 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-b 1.3e-44 150.8 0.2 2.5e-44 149.9 0.2 1.5 1 ATP-synt_ab_Xtn ATPsynthase alpha/beta subunit N-term extens 9.3e-13 48.4 5.2 9.3e-13 48.4 5.2 2.4 2 ATP-synt_ab_N ATP synthase alpha/beta family, beta-barrel 0.0086 16.2 0.0 0.024 14.8 0.0 1.7 1 AAA_22 AAA domain Domain annotation for each model (and alignments): >> ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 304.1 0.0 1.1e-94 4.5e-91 1 213 [] 211 433 .. 211 433 .. 0.98 Alignments for each domain: == domain 1 score: 304.1 bits; conditional E-value: 1.1e-94 SSHHHHHCS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSSEEEEEEESEEHHHHHHHHHHHHH.......TSGGGGEEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxx RF ATP-synt_ab 1 GirvlDalfpivqGqrtlipgafgvGktvisqslskqsnsddaiiyvgiGergnevaevleefpe.......gtimkrttlvan 77 G+r++D++f + +G++ +ipg fg Gktvi+++l+k+++++ +++yvg+Gergne+++vl+efpe + +mkrt+l+an 23726_FusoPortal_Gene_241 211 GQRIIDTFFAVTKGGTAAIPGPFGSGKTVIQHQLAKWADAE-VVVYVGCGERGNEMTDVLMEFPEiidpktgQSLMKRTVLIAN 293 9************************************9777.**************************987555********** PP ETTS-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHCTSEEE....TS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xx RF ATP-synt_ab 78 tsnepvaareasiytgitlAEyfrdqgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagka....pd 157 tsn+pvaareasiytgit+AEyfrd+g+ v l+ads+srwaeAlre+s+rl+emp+d+gypayl++++a++yERag + + 23726_FusoPortal_Gene_241 294 TSNMPVAAREASIYTGITIAEYFRDMGYSVALMADSTSRWAEALREMSGRLEEMPGDEGYPAYLASRIAEFYERAGLVeclgNG 377 ******************************************************************************999888 PP SEEEEEEEEEEEECCGSTTSHHHHHHHCCSSEEEEE-HHHHHTTBSS-BETTTEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF ATP-synt_ab 158 rtGsvtivaavspaggDfsdpvttatlgitdgfivLdkklaqrkhfPainvlvSvS 213 ++G++t++ avsp+ggD+s+pv++ tl+i ++f++Ld +l r+hfPain+l+S+S 23726_FusoPortal_Gene_241 378 EEGALTVIGAVSPPGGDISEPVSQSTLRIAKVFWGLDYALSYRRHFPAINWLNSYS 433 89*****************************************************9 PP >> ATP-synt_ab_Xtn ATPsynthase alpha/beta subunit N-term extension # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 149.9 0.2 6e-48 2.5e-44 1 120 [] 84 202 .. 84 202 .. 0.99 Alignments for each domain: == domain 1 score: 149.9 bits; conditional E-value: 6e-48 EETTS-BHHHHHHHHTSBE-TT----SS-SSS-EEEEESS-TT-EEETT-EEEEEECTTCEEEEEE--TT-EEEEEEE-.EEEE CS ATP-synt_ab_Xtn 1 yDGiqrpLekiaeksgsfierGvsvpaldrekkwefkpkvkvgdkvsggdilGtvqeteliehkimvppkvegkvkeiaeegey 84 +DGiqrpL ki+e+ g+f+ +Gvsvpaldrekkw+f+p+++vg++v++g+++Gtvqete++ hkimvp +v gk+ i+ ege+ 23726_FusoPortal_Gene_241 84 FDGIQRPLLKIQEAVGDFLLKGVSVPALDREKKWQFTPTMQVGEEVEPGKVIGTVQETEIVLHKIMVPNGVYGKIIDIK-EGEF 166 9*****************************************************************************9.**** PP -TTSECEEECETTECEEEESSEEEETTS---ESEEE CS ATP-synt_ab_Xtn 85 tvedtiaeveteekekeltllqkwPvrkprpvkekl 120 tv++ti+++ete+ +el+++qkwPvrk rp+ +kl 23726_FusoPortal_Gene_241 167 TVDKTICSIETENGVRELNMIQKWPVRKGRPYLRKL 202 ********************************9996 PP >> ATP-synt_ab_N ATP synthase alpha/beta family, beta-barrel domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 48.4 5.2 2.2e-16 9.3e-13 1 69 [] 6 68 .. 6 68 .. 0.98 2 ? -0.3 0.1 0.35 1.5e+03 4 31 .. 154 179 .. 152 187 .. 0.76 Alignments for each domain: == domain 1 score: 48.4 bits; conditional E-value: 2.2e-16 EEEEETTEEEEEESTTCETCTTEEEEEECETSSTEEEEEEEEEETTEEEEEESS-STTBBTTSEEEEES CS ATP-synt_ab_N 1 ivqviGpvvdvefgigrlpgiynalevelvefgtlvlgvalnlgedkVrvivmggtdGlsrGteVkrTG 69 i++v+Gp+v +e++++ + y+++ev e ++++g++++ ++dk+ ++v+++t+G+ +G+ V+ TG 23726_FusoPortal_Gene_241 6 IIKVSGPLVVAEGMEE--ANVYDVVEVS--E--NKLIGEIIEMRGDKASIQVYEETTGIGPGDVVVTTG 68 689*************..**********..9..**********************************98 PP == domain 2 score: -0.3 bits; conditional E-value: 0.35 EETTEEEEEESTTCETCTTEEEEEECET CS ATP-synt_ab_N 4 viGpvvdvefgigrlpgiynalevelve 31 v+G+++d++ g+ + + ++ +e+e + 23726_FusoPortal_Gene_241 154 VYGKIIDIKEGEFTVDKTICSIETE--N 179 89******99999776666666666..4 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.8 0.0 5.8e-06 0.024 5 67 .. 224 279 .. 221 301 .. 0.82 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 5.8e-06 AAA_22 5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevv.fvtlpsst.sskdllrellralgle 67 g ++ G+ G+GKT+ +l++++ ++evv +v + + + + +d+l e+ ++++ + 23726_FusoPortal_Gene_241 224 GGTAAIPGPFGSGKTVIQHQLAKWA---------DAEVVvYVGCGERGnEMTDVLMEFPEIIDPK 279 567899*******************.........7777779999999988888899988888843 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (590 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 616 (0.0368597); expected 334.2 (0.02) Passed bias filter: 485 (0.0290211); expected 334.2 (0.02) Passed Vit filter: 50 (0.00299186); expected 16.7 (0.001) Passed Fwd filter: 4 (0.000239349); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.32 # Mc/sec: 5359.84 // [ok]