# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_260.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_260 [L=65] Description: # 278182 # 278376 # -1 # ID=1_260;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.221 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.3e-08 32.5 0.1 1.2e-07 32.2 0.1 1.1 1 ThiS ThiS family ------ inclusion threshold ------ 0.12 12.4 0.1 0.13 12.3 0.1 1.2 1 DUF5450 Family of unknown function (DUF5450) Domain annotation for each model (and alignments): >> ThiS ThiS family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.2 0.1 1.4e-11 1.2e-07 21 77 .] 13 64 .. 2 64 .. 0.80 Alignments for each domain: == domain 1 score: 32.2 bits; conditional E-value: 1.4e-11 TSBHHHHHHHHCHHTTHHHTTTTEEEEETTEEEGC.CTTTSB--TTCEEEEEECTTT- CS ThiS 21 gstvaelleaLgerypelalerrvavavNgeivpr.lwldtelkdgDevailppVaGG 77 + ++ + l + ++r +r++v +Ng+iv++ + ++ +k+ D+++i+ +V+GG 23726_FusoPortal_Gene_260 13 DVNLLDYLIKNKYRV------DRIVVDYNGDIVKKsDFEKINIKNTDKIEIVCFVGGG 64 456666666666677......9*************99********************9 PP >> DUF5450 Family of unknown function (DUF5450) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.1 1.5e-05 0.13 113 143 .. 10 40 .. 3 57 .. 0.89 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 1.5e-05 DUF5450 113 eadgikllsaslkekypvdkvvasyankivv 143 e + ++ll +k+ky vd++v y iv 23726_FusoPortal_Gene_260 10 EINDVNLLDYLIKNKYRVDRIVVDYNGDIVK 40 78999********************999875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (65 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 523 (0.0312949); expected 334.2 (0.02) Passed bias filter: 303 (0.0181307); expected 334.2 (0.02) Passed Vit filter: 30 (0.00179512); expected 16.7 (0.001) Passed Fwd filter: 2 (0.000119674); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.27u 0.28s 00:00:00.55 Elapsed: 00:00:00.38 # Mc/sec: 497.26 // [ok]