# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_261.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_261 [L=434] Description: # 278389 # 279690 # -1 # ID=1_261;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.343 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-195 650.3 1.9 1.2e-195 650.1 1.9 1.0 1 ThiC_Rad_SAM Radical SAM ThiC family Domain annotation for each model (and alignments): >> ThiC_Rad_SAM Radical SAM ThiC family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 650.1 1.9 7.2e-200 1.2e-195 1 417 [. 4 421 .. 4 422 .. 0.99 Alignments for each domain: == domain 1 score: 650.1 bits; conditional E-value: 7.2e-200 ThiC_Rad_SAM 1 tqleaarkgiiteemeevaekenvepefvreevaeGrivipanknhkek.pvaiGkglrtkvnaniGtsadasdieeEveKlkv 83 tq+eaa+kgi+t+em+ +ae+e++++++++e+va+G+i ipank+h++ + ++G+gl+tk+n+n+G+s+d+ ++++E+eK+kv 23726_FusoPortal_Gene_261 4 TQMEAAKKGILTKEMKGIAESESMDEKVLMERVASGEIAIPANKKHSSLlAKGVGTGLSTKINVNLGISKDCPNVDKELEKVKV 87 8*********************************************7777********************************** PP ThiC_Rad_SAM 84 alkagadtvmdLstggdideirekileespvpvgtvpiYqaleekekkveelteeellevieeqaedGvdfltiHagvtleale 167 a++++ad++mdLs g+++e+r+k++++s+++vgtvpiY+a+ +k+++++++ee+l+v++++aedGvdf+tiHag+++ea++ 23726_FusoPortal_Gene_261 88 AIDMKADAIMDLSSFGKTEEFRKKLIAMSTAMVGTVPIYDAIGFYDKELKDIKAEEFLDVVRKHAEDGVDFVTIHAGLNREAVN 171 ************************************************************************************ PP ThiC_Rad_SAM 168 llkkekRltgivSrgGsllaawmlanekenplyeefdelleilkeydvtlSlgdglRpGsiaDatdeaqlaelivlgelvkrar 251 l+k+++R+t+ivSrgGsl++awm+ n++enp+ye+fd+ll+i++eyd+t+Slgd+lRpG+++Datd++q++eli+lgel+kra+ 23726_FusoPortal_Gene_261 172 LFKRNERITNIVSRGGSLMYAWMELNNTENPFYENFDKLLDICEEYDMTISLGDALRPGCLNDATDACQIKELITLGELTKRAW 255 ************************************************************************************ PP ThiC_Rad_SAM 252 eagvqvmveGPGHvpldeieanvklqkklckeaPfyvlGplvtDiapgYDhitsaiGaalaaaaGadllCyvtpaEHlglPdee 335 e++vq+++eGPGH+++deieanvkl+kklc++aPfyvlGplvtDiapgYDhitsaiG+a+aaaaG+d+lCyvtpaEHl+lPd + 23726_FusoPortal_Gene_261 256 ERNVQIIIEGPGHMAIDEIEANVKLEKKLCHNAPFYVLGPLVTDIAPGYDHITSAIGGAIAAAAGVDFLCYVTPAEHLRLPDLD 339 ************************************************************************************ PP ThiC_Rad_SAM 336 dvkeGviaakiaahaadlakglkkarerdkalskaRkeldwekqfelaldpekareireeklpeeeeaCsmCgekCavkive 417 d+keG+ia++iaahaad+ k+++ka ++d++++k+R+++dwe +f+ a+d+ekar++r+e++pe+e++C+mCg++C++++++ 23726_FusoPortal_Gene_261 340 DMKEGIIASRIAAHAADISKKVPKAIDWDNRMAKYRADIDWEGMFTEAIDEEKARRYRKESTPENEDTCTMCGKMCSMRTMK 421 *******************************************************************************997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (434 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 554 (0.0331498); expected 334.2 (0.02) Passed bias filter: 411 (0.0245931); expected 334.2 (0.02) Passed Vit filter: 41 (0.00245333); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.34u 0.27s 00:00:00.61 Elapsed: 00:00:00.38 # Mc/sec: 3320.14 // [ok]