# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_275.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_275 [L=165] Description: # 294238 # 294732 # 1 # ID=1_275;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.269 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-63 213.3 0.3 2.2e-63 213.1 0.3 1.0 1 YgbB YgbB family ------ inclusion threshold ------ 0.012 14.8 0.2 0.016 14.4 0.2 1.1 1 DUF2130 Uncharacterized protein conserved in bacteria (DUF2 Domain annotation for each model (and alignments): >> YgbB YgbB family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 213.1 0.3 2.6e-67 2.2e-63 2 155 .] 3 156 .. 2 156 .. 0.99 Alignments for each domain: == domain 1 score: 213.1 bits; conditional E-value: 2.6e-67 EEEEEEEEEEEEEECEEEETTEEEEESEEEESSSTCHHHHHHHHHHHHHHTT--SHHHHSTTTCGCCTTTCHHHHHHHHHHHHH CS YgbB 2 riGlGyDvHrlaegrklvlgGveieaekgllahSDgDvllhAlvDAllGalalgdigelfpdtdpkykgadSaelLeevlellk 85 riG GyDvH+l+egrkl+lgGve++++kg+l+hSDgDvllhA++DA++Gal+lgdig +fpd+d+++k++dSa+lL+++ +++k 23726_FusoPortal_Gene_275 3 RIGNGYDVHKLVEGRKLMLGGVEVPHTKGVLGHSDGDVLLHAITDAIIGALGLGDIGLHFPDNDENLKDIDSAILLKKINNIMK 86 9*********************************************************************************** PP HTTEEEEEEEEEEECSSSCCGGGHHHHHHHHHHHHTSEGGGEEEEEEETTTSHHHHTTSEEEEEEEEEEE CS YgbB 86 ekgykivnvdvtiiaekpklapykeamrenlakllgleeeqvsvkattteklgfvGrgegiaalavvlle 155 ek+ykivn+d i+++kpkl+py++++r+n+ak+l+++ e ++vka+t+eklgf+G + g+++++vvlle 23726_FusoPortal_Gene_275 87 EKNYKIVNLDSIIVIQKPKLRPYIDSIRNNIAKILEIDSELINVKAKTEEKLGFTGDETGVKSYCVVLLE 156 *******************************************************************996 PP >> DUF2130 Uncharacterized protein conserved in bacteria (DUF2130) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 0.2 1.9e-06 0.016 111 183 .. 64 136 .. 63 149 .. 0.87 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 1.9e-06 DUF2130 111 dkDrrkkkaeyAvLVselepdnelyiegiveyekmyvvrpqffiplitiLrqaliksleakkelenvkekned 183 d+D + k+ + A+L ++ + + + +iv + + v++ + p i+ +r+ + k+le+++el nvk+k+e 23726_FusoPortal_Gene_275 64 DNDENLKDIDSAILLKKINNIMKEKNYKIVNLDSIIVIQKPKLRPYIDSIRNNIAKILEIDSELINVKAKTEE 136 5788888888999977666555555*******************************************99885 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (165 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 789 (0.0472116); expected 334.2 (0.02) Passed bias filter: 511 (0.0305768); expected 334.2 (0.02) Passed Vit filter: 39 (0.00233365); expected 16.7 (0.001) Passed Fwd filter: 2 (0.000119674); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.23u 0.22s 00:00:00.45 Elapsed: 00:00:00.30 # Mc/sec: 1598.87 // [ok]