# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_286.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_286 [L=377] Description: # 304869 # 305999 # 1 # ID=1_286;partial=00;start_type=TTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.293 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.3e-35 121.1 0.0 8.1e-35 120.2 0.0 1.5 1 ABC_tran ABC transporter 9.4e-09 35.4 2.9 0.00036 20.3 0.9 2.5 2 AAA_21 AAA domain, putative AbiEii toxin, Type IV TA s 8.6e-07 28.9 0.0 4.6e-06 26.6 0.0 2.3 2 TOBE_2 TOBE domain 2e-05 24.8 0.2 0.00013 22.2 0.2 2.0 1 AAA_22 AAA domain 0.00077 19.8 0.6 0.0062 16.9 0.6 2.2 1 AAA ATPase family associated with various cellular 0.0009 19.6 0.0 0.0014 19.0 0.0 1.4 1 AAA_16 AAA ATPase domain 0.0013 19.2 5.5 0.0043 17.5 4.6 2.3 1 AAA_23 AAA domain 0.0019 17.5 5.9 0.15 11.4 0.2 2.8 3 SMC_N RecF/RecN/SMC N terminal domain 0.0066 16.3 1.6 0.0088 15.9 0.4 1.8 2 Phage_Gp15 Bacteriophage Gp15 protein 0.0084 15.7 0.0 0.021 14.4 0.0 1.7 1 AAA_29 P-loop containing region of AAA domain 0.0099 15.7 0.0 0.027 14.3 0.0 1.8 1 RsgA_GTPase RsgA GTPase ------ inclusion threshold ------ 0.018 14.9 0.2 0.018 14.9 0.2 2.6 2 ATPase_2 ATPase domain predominantly from Archaea 0.02 14.8 0.0 0.097 12.6 0.0 2.0 2 AAA_5 AAA domain (dynein-related subfamily) 0.028 14.0 0.0 0.028 14.0 0.0 1.1 1 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-bind 0.031 13.0 0.2 4.6 5.8 0.0 2.8 2 ABC_ATPase Predicted ATPase of the ABC class 0.055 13.3 0.0 0.13 12.1 0.0 1.5 1 NACHT NACHT domain 0.072 12.0 0.2 0.2 10.5 0.1 1.7 2 NB-ARC NB-ARC domain 0.082 13.0 0.0 0.2 11.8 0.0 1.6 1 AAA_28 AAA domain 0.083 12.9 0.0 0.13 12.3 0.0 1.2 1 sCache_3_2 Single cache domain 3 0.12 12.5 0.3 2.4 8.4 0.3 2.2 1 SbcCD_C Putative exonuclease SbcCD, C subunit 0.14 12.4 0.4 0.99 9.6 0.4 2.5 1 AAA_19 AAA domain 0.16 11.2 0.0 2.7 7.2 0.0 2.2 2 Mg_chelatase Magnesium chelatase, subunit ChlI 1.7 8.1 15.8 44 3.4 15.8 2.3 1 AAA_15 AAA ATPase domain Domain annotation for each model (and alignments): >> ABC_tran ABC transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 120.2 0.0 1.1e-37 8.1e-35 1 136 [. 21 163 .. 21 164 .. 0.96 Alignments for each domain: == domain 1 score: 120.2 bits; conditional E-value: 1.1e-37 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTEEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..... RF ABC_tran 1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..... 79 lk+++lk+++ge i+G++G+GK+tLl+++ag +p++G i l ++++ + l+ +++ +++q+ lfp+l+v en 23726_FusoPortal_Gene_286 21 LKDINLKIEQGEFFSIIGPSGCGKTTLLRMIAGFISPDSGAIYLGDENMVN--LPPNLRNVNTIFQKYALFPHLNVFENvafpl 102 79****************************************999999998..99999************************** PP ........HHHTCHHHHHHCSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS ........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF ABC_tran 80 ........esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136 + +ee++k+l+ +gl+e +++v s+LSgGq+qr+++aral++kp +lllDEp 23726_FusoPortal_Gene_286 103 rlkkvdekTINEEVNKYLKLVGLEEHSTKKV----SQLSGGQQQRISIARALINKPGVLLLDEPL 163 **99988888888999999999999999999....*****************************7 PP >> AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.8 0.1 2.4e-05 0.018 2 30 .. 34 62 .. 33 79 .. 0.75 2 ! 20.3 0.9 4.9e-07 0.00036 168 298 .. 79 195 .. 64 200 .. 0.69 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 2.4e-05 AAA_21 2 nvliGpNgsGKSnLLdaldllarldrdve 30 +iGp g+GK++LL+ + ++ + d+ ++ 23726_FusoPortal_Gene_286 34 FSIIGPSGCGKTTLLRMIAGFISPDSGAI 62 569***************88755444444 PP == domain 2 score: 20.3 bits; conditional E-value: 4.9e-07 AAA_21 168 llnifadyfgfakekrllqrlvrslklveielsdlgegeeliasvderlrergvvflengdgqelparelSdGtkrllalltal 251 ++ if++y+ f++++ + + +++ +e + ++e+++ ++v + + +++lS G+++ + ++ al 23726_FusoPortal_Gene_286 79 VNTIFQKYALFPHLNVFENVAFPLRLKKVDEKTINEEVNKYLKLVGLEEHS------------TKKVSQLSGGQQQRISIARAL 150 556666666666666666666666666666666666665555443333333............223568899999997888888 PP AAA_21 252 lralkkgsllliDEpEngLHPkllrrll...ellkelsrngaQviltTHS 298 + + ++ll+DEp + L+ kl ll +l+ ++ g+ +i+ TH+ 23726_FusoPortal_Gene_286 151 INKP---GVLLLDEPLSALDAKLRQNLLielDLIHDE--VGITFIFITHD 195 8766...*********************555555444..56********8 PP >> TOBE_2 TOBE domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 0.0 8.5 6.2e+03 16 27 .. 239 250 .. 236 251 .. 0.77 2 ! 26.6 0.0 6.4e-09 4.6e-06 1 72 [. 281 357 .. 281 368 .. 0.82 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 8.5 TOBE_2 16 anglsGtVedve 27 +n +sG+V++++ 23726_FusoPortal_Gene_286 239 NNFFSGKVTEII 250 4589*****986 PP == domain 2 score: 26.6 bits; conditional E-value: 6.4e-09 TOBE_2 1 laiRPEklrla.....aagga..nglsGtVedveylGsstryvvelaggqlvvvrqpnadrdsalapGdtVelswdpdd 72 +++RPEk++l+ + + + n+++ V++ +y G +++y+v l ++++++ + ++ ++ ++ d+ +++wd d+ 23726_FusoPortal_Gene_286 281 ISLRPEKIKLSkneikK-TKNymNSAAVYVDEYIYSGFQSKYYVHLKNNEKLKFKIFMQH-AAFFDDNDEKAIWWDEDA 357 58********9988852.332349**************************9988555555.348999999999999886 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.2 0.2 1.7e-07 0.00013 4 129 .. 30 193 .. 27 199 .. 0.69 Alignments for each domain: == domain 1 score: 22.2 bits; conditional E-value: 1.7e-07 AAA_22 4 tagilvvtGesGtGKTtllrrlleqldeeakaee.............erpevvfvtlpsstsskdllrellralglelka.... 70 + + ++G+sG+GKTtllr+++ ++ a + + + +++++ + + +l+ + 23726_FusoPortal_Gene_286 30 QGEFFSIIGPSGCGKTTLLRMIAGFISPDSGAIYlgdenmvnlppnlR-------------NVNTIFQKYALFPHLNVFEnvaf 100 567889*******************98888888866666666666662.............44444444444444444434444 PP AAA_22 71 ............................erlsseell.ealeqalrarav...ielliiDEaqh.lr...seealeeLrsllnl 118 ++++ ++l + ++ + ara +++l++DE l+ ++++l eL +++ 23726_FusoPortal_Gene_286 101 plrlkkvdektineevnkylklvgleehSTKKVSQLSgGQQQRISIARALinkPGVLLLDEPLSaLDaklRQNLLIELDLIHD- 183 4444444455555555566666666566688888888666666666666699*********7776877556999999999999. PP AAA_22 119 srkgvqliLvG 129 + g+++i++ 23726_FusoPortal_Gene_286 184 -EVGITFIFIT 193 .9999999985 PP >> AAA ATPase family associated with various cellular activities (AAA) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.9 0.6 8.5e-06 0.0062 3 111 .. 36 195 .. 34 208 .. 0.59 Alignments for each domain: == domain 1 score: 16.9 bits; conditional E-value: 8.5e-06 EESSTTSSHHHHHHHHHHHHTHE..............................................EEEEETTTCCSS... CS AAA 3 lyGppGtGKTllakavakelgve..............................................fleisgsellsk... 37 ++Gp G+GKT+l + +a ++ + k 23726_FusoPortal_Gene_286 36 IIGPSGCGKTTLLRMIAGFISPDsgaiylgdenmvnlppnlrnvntifqkyalfphlnvfenvafplrlK----------Kvde 109 68****************9743333333444455555555556666666666666666655554444430..........1444 PP ......................STTHHHHHHHHHHHHHHHTS.TSEEEEEETGGGHCHHHSSCSTHHHHHHHHHHHHHHHHTTT CS AAA 38 ......................yvgesekkirelfkeakeka.kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkk 98 v++ + ++ ++ a++ kp +l++DE + ++ + + Ll eld + 23726_FusoPortal_Gene_286 110 ktineevnkylklvgleehstkKVSQLSGGQQQRISIARALInKPGVLLLDEPLSALDAK----------LRQNLLIELDLIHD 183 455555555666444333333344444444444444444333778999999977766666..........67777777777777 PP SSSTEEEEEEESS CS AAA 99 keskvivigatnr 111 + + +++i +t++ 23726_FusoPortal_Gene_286 184 EVG-ITFIFITHD 195 544.777777776 PP >> AAA_16 AAA ATPase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.0 0.0 1.9e-06 0.0014 23 57 .. 30 65 .. 19 184 .. 0.76 Alignments for each domain: == domain 1 score: 19.0 bits; conditional E-value: 1.9e-06 AAA_16 23 rpelvllsGesGvGKsslvrellralekd.ggiflr 57 ++e ++G+sG+GK++l+r+++ ++ d g+i+l 23726_FusoPortal_Gene_286 30 QGEFFSIIGPSGCGKTTLLRMIAGFISPDsGAIYLG 65 4478899****************9999884344444 PP >> AAA_23 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.5 4.6 5.9e-06 0.0043 11 194 .. 22 304 .. 8 310 .. 0.52 Alignments for each domain: == domain 1 score: 17.5 bits; conditional E-value: 5.9e-06 AAA_23 11 rdqeidF...skgltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiese....................... 68 +d ++ ++ I Gp G+GKTT+l+ i +++ + ++++++ +++ + 23726_FusoPortal_Gene_286 22 KDI--NLkieQGEFFSIIGPSGCGKTTLLRMIAGFISPDSGAIYLG-DENMVNLPPNLRNVntifqkyalfphlnvfenvafpl 102 443..4444444799*****************98888876655554.5566666666555555555667777777765556666 PP AAA_23 69 ...........gkvkayvelt..fenkdgrytrsier....erekskkkgkttkkaklellei..deleqfisellgskki... 130 ++v++y++l+ e+ ++ ++++ ++++++ ++k ll++ ++l+ +++++l ++ + 23726_FusoPortal_Gene_286 103 rlkkvdektinEEVNKYLKLVglEEHSTK----KVSQlsggQQQRISIARALINKPGVLLLDEplSALDAKLRQNLLIELDlih 182 66666655555566666666653222222....222222223333333333334444444444665555555554444433445 PP AAA_23 131 ...ilnlilflgqer.......................fekfelkdkke................................... 153 +++i++ ++++ + e 23726_FusoPortal_Gene_286 183 devGITFIFITHDQQealsisdriavmnagkvlqvgtpA---------Evyeapadtfvadflgennffsgkvteiineelaki 257 556444444444444245555554444444444444440.........044444445555555555554554444433322222 PP AAA_23 154 ...rleelekeleeledekkllekl...eqekekekeleeleeelee 194 + e++ el+++ ++ +++ e++k ++e+++ ++ +++ 23726_FusoPortal_Gene_286 258 nleGIGEIIIELDKKVKIGDKVTISlrpEKIKLSKNEIKKTKNYMNS 304 22244444444444444444444448888888888888888877765 PP >> SMC_N RecF/RecN/SMC N terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.3 0.1 0.0018 1.3 23 44 .. 30 51 .. 5 66 .. 0.75 2 ! 11.4 0.2 0.0002 0.15 111 206 .. 110 203 .. 79 215 .. 0.72 3 ? -0.9 0.1 1.2 8.5e+02 89 129 .. 299 339 .. 252 345 .. 0.70 Alignments for each domain: == domain 1 score: 8.3 bits; conditional E-value: 0.0018 TSSEEEEEESTTSSHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxx RF SMC_N 23 sksftaivGpNGSGKsnlldAi 44 + +f +i+Gp G+GK+ ll i 23726_FusoPortal_Gene_286 30 QGEFFSIIGPSGCGKTTLLRMI 51 346899**********998766 PP == domain 2 score: 11.4 bits; conditional E-value: 0.0002 EEETTEEE-HHHHHHHHHCTT--TTCS-HHHHHHHHHHHHHHHHTCS--SEEEECSTTTTS-HHHHHHHHHHHHHHCCT..SEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxx RF SMC_N 111 ykingkevtkkevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQf 192 +in++ ++ ++ l e++ + ++LSgG+++ +++a +++ + llDe +aLD+k ++++ l+ +++ f 23726_FusoPortal_Gene_286 110 KTINEEVNKYLKLVGLEEHSTKKVSQLSGGQQQRISIARA----LINKPGVLLLDEPLSALDAKLRQNLLIELDLIHDEvgITF 189 3455555555555555555555666*******98887644....456778899*************999876664333323899 PP EEE-SSHHHHTT-S CS xxxxxxxxxxxxxx RF SMC_N 193 ivislreemlekad 206 i i+++++ + 23726_FusoPortal_Gene_286 190 IFITHDQQEALSIS 203 99999887655444 PP == domain 3 score: -0.9 bits; conditional E-value: 1.2 E-B----BEEEEEEEETTT-EEEEETTEEE-HHHHHHHHHC CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF SMC_N 89 klkiekeevsisrrvkrkgeseykingkevtkkevselles 129 k +++ v++ ++++ +s+y++ k+ +k + + ++++ 23726_FusoPortal_Gene_286 299 KNYMNSAAVYVDEYIYSGFQSKYYVHLKNNEKLKFKIFMQH 339 24566667888888888888888887777777666666655 PP >> Phage_Gp15 Bacteriophage Gp15 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.1 0.0 4.1 3e+03 53 87 .. 107 141 .. 92 146 .. 0.71 2 ! 15.9 0.4 1.2e-05 0.0088 83 126 .. 296 337 .. 252 349 .. 0.75 Alignments for each domain: == domain 1 score: -2.1 bits; conditional E-value: 4.1 Phage_Gp15 53 eepedleeaiekllwfyscgkeeeqkkskkdkkgn 87 +++ ++e+++k l+++ +++ ++k s+ + ++ 23726_FusoPortal_Gene_286 107 VDEKTINEEVNKYLKLVGLEEHSTKKVSQLSGGQQ 141 45677788888888888777776666666655554 PP == domain 2 score: 15.9 bits; conditional E-value: 1.2e-05 Phage_Gp15 83 dkkgnklkqiysfsqDaeyIyaaFlqqYgiDLievekLhWwkFk 126 +k +n ++ + +eyIy+ F ++Y + L + ekL+++ F+ 23726_FusoPortal_Gene_286 296 KKTKNYMNS--AAVYVDEYIYSGFQSKYYVHLKNNEKLKFKIFM 337 333333332..3456689*********************99986 PP >> AAA_29 P-loop containing region of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.4 0.0 2.9e-05 0.021 17 43 .. 26 52 .. 14 63 .. 0.77 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 2.9e-05 AAA_29 17 ieldlkgvtlltGpsGsGKSTllDAiq 43 +++++ +++ ++GpsG GK+Tll i+ 23726_FusoPortal_Gene_286 26 LKIEQGEFFSIIGPSGCGKTTLLRMIA 52 566645599*************96555 PP >> RsgA_GTPase RsgA GTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.3 0.0 3.7e-05 0.027 88 121 .. 19 53 .. 1 66 [. 0.76 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 3.7e-05 TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS RsgA_GTPase 88 egleelkellkd.ktsvlvGqSGvGKStLinallp 121 + l++++ ++++ ++ ++G+SG GK+tL+ ++++ 23726_FusoPortal_Gene_286 19 QILKDINLKIEQgEFFSIIGPSGCGKTTLLRMIAG 53 5667788888877999**************99986 PP >> ATPase_2 ATPase domain predominantly from Archaea # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.9 0.2 2.4e-05 0.018 9 42 .. 22 53 .. 15 181 .. 0.77 2 ? 0.2 1.0 0.74 5.4e+02 63 128 .. 244 313 .. 230 336 .. 0.64 Alignments for each domain: == domain 1 score: 14.9 bits; conditional E-value: 2.4e-05 ATPase_2 9 keleeilerepneiyfiYGpegsGKtaLlkeiie 42 k+++ +e+ e+ i Gp g+GKt+Ll+ i+ 23726_FusoPortal_Gene_286 22 KDINLKIEQ--GEFFSIIGPSGCGKTTLLRMIAG 53 555555555..788999************98875 PP == domain 2 score: 0.2 bits; conditional E-value: 0.74 ATPase_2 63 skldefieeeeekkklekalgiavpkaeleeilk.eksklvfkaielllekikkkgkk...iiiiiDelq 128 k++e i+ee k +le i ++ ++ +i + ++ l ++i+l +++ikk++ ++ +De 23726_FusoPortal_Gene_286 244 GKVTEIINEELAKINLEGIGEIIIELDKKVKIGDkVTISLRPEKIKLSKNEIKKTKNYmnsAAVYVDEYI 313 5555666666666655555555555544444444455566667777777777777665666677777754 PP >> AAA_5 AAA domain (dynein-related subfamily) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.0 0.00013 0.097 4 36 .. 36 69 .. 34 71 .. 0.87 2 ? -1.6 0.0 3.2 2.3e+03 36 69 .. 290 323 .. 287 346 .. 0.77 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 0.00013 EE--SSSSHHHHHHHGGGGB.S--EEEEE--TT- CS AAA_5 4 LvGppGtgKselaerlaaal.nreveyvqltrdt 36 ++Gp+G+gK++l + +a ++ ++ ++++ +++ 23726_FusoPortal_Gene_286 36 IIGPSGCGKTTLLRMIAGFIsPDSGAIYLGDENM 69 79***************99988888888887776 PP == domain 2 score: -1.6 bits; conditional E-value: 3.2 --HHHHH--B--.........--------G-SEE CS AAA_5 36 tteedlkgrreikngttslvdsplvraaregeil 69 ++++++k +++n+ +++vd ++ ++++ + 23726_FusoPortal_Gene_286 290 LSKNEIKKTKNYMNSAAVYVDEYIYSGFQSKYYV 323 5778899999999999999999988888866655 PP >> ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.0 0.0 3.8e-05 0.028 6 49 .. 23 182 .. 17 316 .. 0.64 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 3.8e-05 HHCS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSSEEEEEE......................................... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................................... RF ATP-synt_ab 6 DalfpivqGqrtlipgafgvGktvisqslskqsnsddaiiyvg......................................... 48 D + i qG+ i+g +g+Gkt+++++++ + d+ iy g 23726_FusoPortal_Gene_286 23 DINLKIEQGEFFSIIGPSGCGKTTLLRMIAGFISPDSGAIYLGdenmvnlppnlrnvntifqkyalfphlnvfenvafplrlkk 106 55667899**********************998777788888766666666666666666666666666666666666666666 PP ...........................................................................E CS ...........................................................................x RF ATP-synt_ab 49 ...........................................................................i 49 23726_FusoPortal_Gene_286 107 vdektineevnkylklvgleehstkkvsqlsggqqqrisiaralinkpgvllldeplsaldaklrqnllieldliH 182 6666666666666666555555555555555555555555555555555555555555555555555555555550 PP >> ABC_ATPase Predicted ATPase of the ABC class # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.8 0.0 0.027 20 241 265 .. 27 52 .. 23 56 .. 0.88 2 ? 5.8 0.0 0.0064 4.6 321 390 .. 134 203 .. 113 230 .. 0.66 Alignments for each domain: == domain 1 score: 3.8 bits; conditional E-value: 0.027 EE-SS.EEEEEE-TTSSHHHHHHHHH CS ABC_ATPase 241 gipkG.vtlIvGggfhGKsTLLeAle 265 i +G + I+G+ GK+TLL+ ++ 23726_FusoPortal_Gene_286 27 KIEQGeFFSIIGPSGCGKTTLLRMIA 52 588888999*************9875 PP == domain 2 score: 5.8 bits; conditional E-value: 0.0064 SS--HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHHHHH--E CS ABC_ATPase 321 edASGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrelykklgvs 390 ++ SG q +i++al ++ +lL+DE sA +r +++ el ++e +++ ++ + l +s 23726_FusoPortal_Gene_286 134 SQLSGGQQQRISIARALINKPGVLLLDEPLSALDAKLRQNLLIELDLIHDEVGITFIFITHDQQEALSIS 203 46699999999999***9999*******999976666555554443222222223444444444444444 PP >> NACHT NACHT domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 0.0 0.00018 0.13 5 21 .. 36 52 .. 33 57 .. 0.91 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 0.00018 NACHT 5 lqGeaGsGKTtLlqkla 21 + G++G+GKTtLl+ +a 23726_FusoPortal_Gene_286 36 IIGPSGCGKTTLLRMIA 52 89************997 PP >> NB-ARC NB-ARC domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 0.1 0.00028 0.2 17 39 .. 29 51 .. 18 54 .. 0.83 2 ? -2.2 0.0 2.2 1.6e+03 86 109 .. 137 160 .. 94 163 .. 0.58 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 0.00028 SSSEEEEEEESTTSSHHHHHHHH CS NB-ARC 17 delgivalvGmgGvGKttlakqi 39 ++ ++ ++ G G+GKttl++ i 23726_FusoPortal_Gene_286 29 EQGEFFSIIGPSGCGKTTLLRMI 51 677899*************9877 PP == domain 2 score: -2.2 bits; conditional E-value: 2.2 SSHHHHHHHHHHHCCCTSEEEEEE CS NB-ARC 86 keeselkrklrrlLlrkrfllvlD 109 ++ + r+L++k +l+lD 23726_FusoPortal_Gene_286 137 SGGQQQRISIARALINKPGVLLLD 160 223335557888899998888888 PP >> AAA_28 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 0.0 0.00027 0.2 3 20 .. 35 52 .. 33 67 .. 0.89 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 0.00027 AAA_28 3 vitGgestGKTtlleaLa 20 i+G++++GKTtll+ +a 23726_FusoPortal_Gene_286 35 SIIGPSGCGKTTLLRMIA 52 59************9876 PP >> sCache_3_2 Single cache domain 3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.0 0.00018 0.13 10 85 .. 140 222 .. 132 237 .. 0.75 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 0.00018 sCache_3_2 10 leeralalatsvagsrivrvaltd....rapesglqalv..ddvrritgvdyvvitDeegrvlahpdpa...evgrklsgpata 84 +++r +++a+++ +++v +l + +++ + + l+ d + + g+++++it +++ l +d+ + g++l+ ++ a 23726_FusoPortal_Gene_286 140 QQQR-ISIARALINKPGV-LLLDEplsaLDAKLRQNLLIelDLIHDEVGITFIFITHDQQEALSISDRIavmNAGKVLQVGTPA 221 5555.9************.4444468754444444455599****************999999999998777777777555555 PP sCache_3_2 85 a 85 + 23726_FusoPortal_Gene_286 222 E 222 4 PP >> SbcCD_C Putative exonuclease SbcCD, C subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.4 0.3 0.0033 2.4 26 84 .. 129 174 .. 108 178 .. 0.72 Alignments for each domain: == domain 1 score: 8.4 bits; conditional E-value: 0.0033 SbcCD_C 26 lsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatl 84 +++++lSGG++q +++a a l+ +++++++LDE s lD++ +++l 23726_FusoPortal_Gene_286 129 STKKVSQLSGGQQQR-ISIARA-----LI-------NKPGVLLLDEPLSALDAKLRQNL 174 457777888888833.333332.....22.......34889999999999999988876 PP >> AAA_19 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.6 0.4 0.0014 0.99 10 34 .. 31 55 .. 24 318 .. 0.81 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 0.0014 AAA_19 10 ekvllvtaGpGtGKTrvlkhivall 34 + + ++++ G+GKT++l++i + 23726_FusoPortal_Gene_286 31 GEFFSIIGPSGCGKTTLLRMIAGFI 55 567789************9987655 PP >> Mg_chelatase Magnesium chelatase, subunit ChlI # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 0.0 0.0037 2.7 27 50 .. 36 59 .. 25 94 .. 0.86 2 ? 1.6 0.0 0.2 1.4e+02 82 115 .. 128 162 .. 104 176 .. 0.69 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.0037 Mg_chelatase 27 lvGppGsGKtmlakrlpsllppls 50 ++Gp+G+GKt l + +++ ++p s 23726_FusoPortal_Gene_286 36 IIGPSGCGKTTLLRMIAGFISPDS 59 79************9999887755 PP == domain 2 score: 1.6 bits; conditional E-value: 0.2 Mg_chelatase 82 hhsaskaalvGggs.kpkpGeislahnGvLfLDEl 115 h + + l Gg++ ++ + GvL+LDE 23726_FusoPortal_Gene_286 128 HSTKKVSQLSGGQQqRISIARALINKPGVLLLDEP 162 444444556666553344444455578******94 PP >> AAA_15 AAA ATPase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.4 15.8 0.06 44 16 167 .. 23 333 .. 20 368 .. 0.58 Alignments for each domain: == domain 1 score: 3.4 bits; conditional E-value: 0.06 AAA_15 16 dteidldee.ltvliGkNnsGKSsilealdlflnnkekkn............................................ 54 d+ ++++ + +iG+ ++GK+++l+++ f++ + + 23726_FusoPortal_Gene_286 23 DINLKIEQGeFFSIIGPSGCGKTTLLRMIAGFISPD---Sgaiylgdenmvnlppnlrnvntifqkyalfphlnvfenvafplr 103 5444444436999*********************88...444688899999999999999999999999999888888888877 PP AAA_15 55 .................................................................................... 54 23726_FusoPortal_Gene_286 104 lkkvdektineevnkylklvgleehstkkvsqlsggqqqrisiaralinkpgvllldeplsaldaklrqnllieldlihdevgi 187 777777777777777776666666666666666666666666666666666666666666555555555555555554444444 PP AAA_15 55 enkvikiekedlekfeniseskeikIdvef...................................................... 84 + f 23726_FusoPortal_Gene_286 188 T----------------------------Fifithdqqealsisdriavmnagkvlqvgtpaevyeapadtfvadflgennffs 243 0............................0333334444444444444444555555555555555555555555555555444 PP AAA_15 85 ..........liefeyledkkkilklksk.kkskeyestlkskgkkkadlllkkkekdlkklikdkklklkkneysdekisvek 157 l + + + + ++i++l++k k ++ +l+++++k ++ +++k++k++ ++ ++++++ys +++ 23726_FusoPortal_Gene_286 244 gkvteiineeLAKINLEGIGEIIIELDKKvKIGDKVTISLRPEKIKLSK----NEIKKTKNYMNSAAVYVDEYIYSGFQSKYYV 323 4433333333333333334444444444454455555555555555443....5555555555555555554444433333333 PP AAA_15 158 kkekkelekk 167 +++e k+ 23726_FusoPortal_Gene_286 324 HLKNNEKLKF 333 3333333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (377 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 819 (0.0490067); expected 334.2 (0.02) Passed bias filter: 436 (0.026089); expected 334.2 (0.02) Passed Vit filter: 92 (0.00550503); expected 16.7 (0.001) Passed Fwd filter: 23 (0.00137626); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 23 [number of targets reported over threshold] # CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.35 # Mc/sec: 3131.29 // [ok]