# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_30.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_30 [L=262] Description: # 35433 # 36218 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.317 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4e-28 98.5 0.1 5.7e-28 98.0 0.1 1.2 1 ABC_tran ABC transporter 1.3e-06 28.4 0.9 0.0023 17.7 0.0 2.2 2 AAA_21 AAA domain, putative AbiEii toxin, Type IV TA s 1.5e-06 27.7 2.2 4.9e-06 26.0 2.2 1.7 1 SMC_N RecF/RecN/SMC N terminal domain 3.5e-05 22.7 3.7 0.014 14.1 0.3 2.8 2 ABC_ATPase Predicted ATPase of the ABC class 0.00027 21.1 0.1 0.00048 20.3 0.1 1.7 1 AAA_22 AAA domain 0.00031 20.3 0.5 0.0007 19.2 0.5 1.5 1 AAA_29 P-loop containing region of AAA domain 0.00087 19.7 0.0 0.0016 18.8 0.0 1.4 1 oligo_HPY Oligopeptide/dipeptide transporter, C-terminal 0.001 19.5 1.8 0.0014 19.1 1.8 1.4 1 AAA_23 AAA domain 0.0025 18.1 0.0 0.0036 17.6 0.0 1.4 1 AAA_16 AAA ATPase domain ------ inclusion threshold ------ 0.01 15.7 0.3 0.027 14.3 0.3 1.7 1 RsgA_GTPase RsgA GTPase 0.011 14.8 0.1 0.013 14.6 0.1 1.1 1 G-alpha G-protein alpha subunit 0.011 15.4 0.2 0.018 14.7 0.2 1.4 1 PRK Phosphoribulokinase / Uridine kinase family 0.011 15.0 0.2 0.02 14.2 0.2 1.4 1 FtsK_SpoIIIE FtsK/SpoIIIE family 0.012 15.4 0.0 0.017 14.9 0.0 1.4 1 NACHT NACHT domain 0.023 13.6 0.4 0.038 12.9 0.4 1.6 1 NB-ARC NB-ARC domain 0.043 14.1 0.4 0.16 12.3 0.4 2.2 1 RNA_helicase RNA helicase 0.062 13.1 0.4 0.11 12.2 0.4 1.7 1 ATPase_2 ATPase domain predominantly from Archaea 0.12 12.2 0.2 0.25 11.2 0.2 1.5 1 TsaE Threonylcarbamoyl adenosine biosynthesis protei 0.13 12.2 2.2 0.14 12.1 0.8 1.9 2 MMR_HSR1 50S ribosome-binding GTPase 0.15 12.0 2.3 0.2 11.6 1.3 1.7 2 DUF87 Domain of unknown function DUF87 0.17 12.1 1.0 0.5 10.6 0.9 1.9 1 AAA_19 AAA domain 0.45 10.4 2.6 0.71 9.8 2.5 1.7 1 Dynamin_N Dynamin family 1.4 8.4 5.5 1.7 8.1 0.7 2.2 2 AAA_15 AAA ATPase domain Domain annotation for each model (and alignments): >> ABC_tran ABC transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 98.0 0.1 7.8e-31 5.7e-28 2 137 .] 19 177 .. 18 177 .. 0.93 Alignments for each domain: == domain 1 score: 98.0 bits; conditional E-value: 7.8e-31 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--....SEEEEEETTEEGGG....B-HHHCCHCEEEE-SS..--S-TTSBH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx..xxxxxxxxx RF ABC_tran 2 knvslklkegekvaivGenGaGKStLlkllagllkp....teGeilldgkdlke....qeleslrkeigvlpqe..pqlfpeltv 76 +n sl++++ge++ ivGe+G+GKSt+l+ ++g l t+G+i ++gk+l + + +e i++++q+ ++l+p ++ 23726_FusoPortal_Gene_30 19 ENFSLTMQKGEIISIVGESGSGKSTVLRSIIGGLLGqgkiTSGDIIFNGKSLLNlsnnEWRELRGTVISMISQDcgATLNPIRKI 103 799**************************998776556669**********9999997888888899****************** PP HHH..............HHHTCHHHHHHCSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS xxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF ABC_tran 77 ren..............esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137 +++ e+++++ +l+k++l+e +++++s p++LSgG+kqrv +a+al +p+l+l+DEpt+ 23726_FusoPortal_Gene_30 104 GSQyieyinahtnlnktEAEKKALFMLEKVRLPE-VKNIMNSYPYELSGGMKQRVGIAMALTFEPELVLADEPTS 177 ***************9999999************.788899********************************96 PP >> AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.6 1.3 0.0018 1.3 3 20 .. 32 49 .. 30 83 .. 0.78 2 ! 17.7 0.0 3.2e-06 0.0023 234 299 .. 146 209 .. 100 213 .. 0.87 Alignments for each domain: == domain 1 score: 8.6 bits; conditional E-value: 0.0018 AAA_21 3 vliGpNgsGKSnLLdald 20 ++G gsGKS++L+ + 23726_FusoPortal_Gene_30 32 SIVGESGSGKSTVLRSII 49 69************9883 PP == domain 2 score: 17.7 bits; conditional E-value: 3.2e-06 AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrll.ellkelsr.ngaQviltTHSp 299 ++elS G+k+ +++ al + l+l DEp + L+ ++ ++ +++ el++ + +i++TH+ 23726_FusoPortal_Gene_30 146 PYELSGGMKQRVGIAMALTFEP---ELVLADEPTSALDVTTQAQIVkQMM-ELRDeFHTGIIIVTHNM 209 799*****************99...9********************5555.333336779******96 PP >> SMC_N RecF/RecN/SMC N terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.0 2.2 6.8e-09 4.9e-06 24 210 .. 28 220 .. 4 228 .. 0.67 Alignments for each domain: == domain 1 score: 26.0 bits; conditional E-value: 6.8e-09 SSEEEEEESTTSSHHHHHHHHH.HHHTT.TSSS--HHHHCCCT--........SSSSSTTCCEEEECEEECCEE-B----BEEEE CS xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF SMC_N 24 ksftaivGpNGSGKsnlldAil.FvLGersakklrseklsdlihk.......skekasvkkaeveitfdnedkklkiekeevsis 100 ++ +ivG+ GSGKs +l +i +LG+ k+ + d+i++ s+++ + +++v +++++ + + ++ +i 23726_FusoPortal_Gene_30 28 GEIISIVGESGSGKSTVLRSIIgGLLGQG---KI---TSGDIIFNgksllnlSNNEWRELRGTVISMISQDCGA--TLNPIRKIG 104 35789***************941344532...33...3445666555555556777777777776665544444..456666677 PP EEEETTT-EEEEETTEEE-HHHHHHHHHCTT--TT.........CS-HHHHHHHHHHHHHHHHTCS--SEEEECSTTTTS-HHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF SMC_N 101 rrvkrkgeseykingkevtkkevsellesagiske.........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknv 176 + ++ + + +n++e++kk + +le++++ + +LSgG k+ v +a+ + ++p+ l+l De +aLD + 23726_FusoPortal_Gene_30 105 SQYIEYINAHTNLNKTEAEKKALF-MLEKVRLPEVknimnsypyELSGGMKQRVGIAMALT---FEPE-LVLADEPTSALDVTTQ 184 777777777777777777776654.44555554444556666669**********999864...5665.8999********9988 PP HHHHHHHHHHCCT..SEEEEE-SSHHHHTT-SCEEE CS xxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx RF SMC_N 177 kkvaellkekskn..aQfivislreemlekadklvg 210 +++++ + e +++ + +i+++++ ++ + + + 23726_FusoPortal_Gene_30 185 AQIVKQMMELRDEfhTGIIIVTHNMGVAAYMADKII 220 777777776666634788999999888777643333 PP >> ABC_ATPase Predicted ATPase of the ABC class # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.8 0.3 0.0016 1.2 241 267 .. 24 51 .. 8 55 .. 0.90 2 ! 14.1 0.3 1.9e-05 0.014 309 431 .. 135 242 .. 132 255 .. 0.78 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.0016 EE-SS.EEEEEE-TTSSHHHHHHHHHHC CS ABC_ATPase 241 gipkG.vtlIvGggfhGKsTLLeAlekG 267 ++kG ++ IvG GKsT L+++ G 23726_FusoPortal_Gene_30 24 TMQKGeIISIVGESGSGKSTVLRSIIGG 51 678999*****************99777 PP == domain 2 score: 14.1 bits; conditional E-value: 1.9e-05 -CCC--STTEEESS--HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHHHHH--EEEE CS ABC_ATPase 309 LPegkdttkfstedASGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrelykklgvstil 393 LPe k+ ++ + SG + q + i+ al + +l+L DE tsA q+ +v++++el++++ +i+ 23726_FusoPortal_Gene_30 135 LPEVKNIMNSYPYELSGGMKQRVGIAMALTFEPELVLADEPTSALDVTT-----QAQ----------IVKQMMELRDEFHTGIII 204 6666666666667779999999999999999999999999999976555.....332..........4788999*********** PP EESS-GCCTTT-SEEEEEETTEEEE-HHHHHHHHHCHT CS ABC_ATPase 394 vvggsgdyldvAdtvilmeeykpkdvtekakeiaeela 431 v+ +g +Ad++i+m++ + d ++ + i + ++ 23726_FusoPortal_Gene_30 205 VTHNMGVAAYMADKIIVMQNGVVVDSGTREEVINNPKS 242 *******************9999888877666655444 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.3 0.1 6.6e-07 0.00048 4 70 .. 27 95 .. 24 207 .. 0.80 Alignments for each domain: == domain 1 score: 20.3 bits; conditional E-value: 6.6e-07 AAA_22 4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevv....fvtlpsstsskdllrellralglelka 70 + i+ ++GesG+GK+t+lr + l + k++ + + + +l++ ++++l+ + + + +++ a 23726_FusoPortal_Gene_30 27 KGEIISIVGESGSGKSTVLRSIIGGLLGQGKITSGDII-FngksLLNLSNN-EWRELRGTVISMISQDCGA 95 56799*****************9999877777663333.346434444444.5999999999988888888 PP >> AAA_29 P-loop containing region of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.2 0.5 9.6e-07 0.0007 18 48 .. 24 54 .. 17 62 .. 0.77 Alignments for each domain: == domain 1 score: 19.2 bits; conditional E-value: 9.6e-07 AAA_29 18 eldlkg.vtlltGpsGsGKSTllDAiqalLvp 48 +++ kg ++ ++G+sGsGKST+l +i+ L++ 23726_FusoPortal_Gene_30 24 TMQ-KGeIISIVGESGSGKSTVLRSIIGGLLG 54 455.345999************9888766665 PP >> oligo_HPY Oligopeptide/dipeptide transporter, C-terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.8 0.0 2.2e-06 0.0016 3 31 .. 230 258 .. 228 260 .. 0.91 Alignments for each domain: == domain 1 score: 18.8 bits; conditional E-value: 2.2e-06 oligo_HPY 3 rgpssklfdeplHPYTkaLlrsvprldre 31 g++++++++p+ YTk+Ll+++p++d e 23726_FusoPortal_Gene_30 230 SGTREEVINNPKSDYTKKLLKAIPEMDGE 258 699**********************9976 PP >> AAA_23 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.1 1.8 1.9e-06 0.0014 19 64 .. 28 70 .. 10 198 .. 0.69 Alignments for each domain: == domain 1 score: 19.1 bits; conditional E-value: 1.9e-06 AAA_23 19 kgltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdve 64 + I+G+ G+GK+T+l+ i +L g+ + +s++ +++++ 23726_FusoPortal_Gene_30 28 GEIISIVGESGSGKSTVLRSIIGGLLGQGKITSGDI---IFNGKSL 70 46889*********************9754444333...3333333 PP >> AAA_16 AAA ATPase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.6 0.0 5e-06 0.0036 21 45 .. 25 49 .. 15 126 .. 0.86 Alignments for each domain: == domain 1 score: 17.6 bits; conditional E-value: 5e-06 AAA_16 21 sgrpelvllsGesGvGKsslvrell 45 ++ +e++ ++GesG+GKs+++r++ 23726_FusoPortal_Gene_30 25 MQKGEIISIVGESGSGKSTVLRSII 49 45569****************9986 PP >> RsgA_GTPase RsgA GTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.3 0.3 3.7e-05 0.027 92 122 .. 20 51 .. 4 65 .. 0.78 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 3.7e-05 HHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT CS RsgA_GTPase 92 elkellkd.ktsvlvGqSGvGKStLinallpe 122 + + +++ +++ +vG+SG GKSt++ ++++ 23726_FusoPortal_Gene_30 20 NFSLTMQKgEIISIVGESGSGKSTVLRSIIGG 51 55555555599***************999875 PP >> G-alpha G-protein alpha subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.6 0.1 1.8e-05 0.013 26 90 .. 31 127 .. 12 224 .. 0.64 Alignments for each domain: == domain 1 score: 14.6 bits; conditional E-value: 1.8e-05 EEEEESTTSSHHHHHHHHH..HHCS--...............--HHHHHCCHHHHHHHHHHHHHHHHHHHHHTT........... CS G-alpha 26 llllGqseSGKsTilkqlk..llykkg...............fseeelatwraviqlnivrsiktilealesleselsesf.... 89 + ++G+s+SGKsT+l+++ ll +++ s++e +++r +++ i ++ l+ +++ +s+ +e + 23726_FusoPortal_Gene_30 31 ISIVGESGSGKSTVLRSIIggLLGQGKitsgdiifngksllnLSNNEWRELRGTVISMISQDCGATLNPIRKIGSQYIEYInaht 115 7799**************9877776668999999999999998888899999999999999999999999998888866666655 PP ...........H CS G-alpha 90 ...........e 90 23726_FusoPortal_Gene_30 116 nlnkteaekkaL 127 444333222222 PP >> PRK Phosphoribulokinase / Uridine kinase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.7 0.2 2.5e-05 0.018 1 21 [. 30 50 .. 30 80 .. 0.74 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 2.5e-05 PRK 1 vIgvagsSGaGkttvarklek 21 +I++ g+SG+Gk+tv r + 23726_FusoPortal_Gene_30 30 IISIVGESGSGKSTVLRSIIG 50 8***************98754 PP >> FtsK_SpoIIIE FtsK/SpoIIIE family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.2 0.2 2.8e-05 0.02 42 64 .. 31 53 .. 5 56 .. 0.80 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 2.8e-05 EEEE--TTSSHHHHHHHHHHHHH CS FtsK_SpoIIIE 42 llvaGatgsGKStalntLilSla 64 + ++G +gsGKSt+l+++i +l+ 23726_FusoPortal_Gene_30 31 ISIVGESGSGKSTVLRSIIGGLL 53 569****************8876 PP >> NACHT NACHT domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.9 0.0 2.4e-05 0.017 3 71 .. 31 102 .. 29 130 .. 0.69 Alignments for each domain: == domain 1 score: 14.9 bits; conditional E-value: 2.4e-05 NACHT 3 vilqGeaGsGKTtLlqklala.waegklpqga..fklvFflslrelsrsgnarsladllfsqlpepaapvse 71 + + Ge+GsGK+t l++++ + +gk +g f +l+l+ ++++ +++ ++ +++ + p+++ 23726_FusoPortal_Gene_30 31 ISIVGESGSGKSTVLRSIIGGlLGQGKITSGDiiFNGKSLLNLSNNEWRELRGTVISMISQDCGATLNPIRK 102 7799**************975156777766543333333555555555555556666666666666666655 PP >> NB-ARC NB-ARC domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 0.4 5.2e-05 0.038 5 40 .. 14 49 .. 10 133 .. 0.90 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 5.2e-05 HHHHHHHHHTCTSSSEEEEEEESTTSSHHHHHHHHT CS NB-ARC 5 vekviekLleledelgivalvGmgGvGKttlakqil 40 +++v e+ + + ++ +i+++vG G+GK+t++++i+ 23726_FusoPortal_Gene_30 14 KNAVVENFSLTMQKGEIISIVGESGSGKSTVLRSII 49 5677777777678889***************99985 PP >> RNA_helicase RNA helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.4 0.00022 0.16 2 35 .. 32 64 .. 31 152 .. 0.87 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 0.00022 RNA_helicase 2 wlyGpsgeGKStlakeLakallkklklkkkdsvy 35 ++G+sg GKSt+ ++++ ll++ k ++ d ++ 23726_FusoPortal_Gene_30 32 SIVGESGSGKSTVLRSIIGGLLGQGKITSGD-II 64 689*****************99888666533.33 PP >> ATPase_2 ATPase domain predominantly from Archaea # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 0.4 0.00016 0.11 16 50 .. 24 58 .. 20 205 .. 0.82 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 0.00016 ATPase_2 16 erepneiyfiYGpegsGKtaLlkeiienledkdky 50 +++ ei+ i G gsGK+++l+ ii l+ ++k 23726_FusoPortal_Gene_30 24 TMQKGEIISIVGESGSGKSTVLRSIIGGLLGQGKI 58 567889********************998877774 PP >> TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 0.2 0.00035 0.25 14 50 .. 21 60 .. 8 62 .. 0.77 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 0.00035 HHHHH..-EEEEEEESTTSSHHHHHHHHHHHTT--.---- CS TsaE 14 lakal..gdvilLeGdLGaGKTtlvrglakalgve.evkS 50 + ++ g++i + G+ G+GK+t+ r+++ +l + +++S 23726_FusoPortal_Gene_30 21 FSLTMqkGEIISIVGESGSGKSTVLRSIIGGLLGQgKITS 60 3333344889*******************99977778887 PP >> MMR_HSR1 50S ribosome-binding GTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 0.8 0.0002 0.14 2 22 .. 31 51 .. 30 103 .. 0.88 2 ? -2.4 0.0 6.2 4.5e+03 72 72 .. 193 193 .. 155 237 .. 0.61 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 0.0002 EEEEESTTSSHHHHHHHHHTS CS MMR_HSR1 2 vaivGrpNvGKStLinaltge 22 + ivG + +GKSt++++++g 23726_FusoPortal_Gene_30 31 ISIVGESGSGKSTVLRSIIGG 51 78****************984 PP == domain 2 score: -2.4 bits; conditional E-value: 6.2 H CS MMR_HSR1 72 a 72 + 23726_FusoPortal_Gene_30 193 E 193 2 PP >> DUF87 Domain of unknown function DUF87 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 1.3 0.00028 0.2 27 49 .. 32 54 .. 29 65 .. 0.84 2 ? -1.9 0.0 3.8 2.8e+03 122 151 .. 105 134 .. 84 194 .. 0.64 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 0.00028 DUF87 27 AilgsTGsGKSntvavLleelle 49 i+g++GsGKS+ ++++ ll 23726_FusoPortal_Gene_30 32 SIVGESGSGKSTVLRSIIGGLLG 54 79****************99985 PP == domain 2 score: -1.9 bits; conditional E-value: 3.8 DUF87 122 eealdqakakeekeklssdepveklleelk 151 ++++++ a ++ +k+ +++ ++le+++ 23726_FusoPortal_Gene_30 105 SQYIEYINAHTNLNKTEAEKKALFMLEKVR 134 455555555555555555555555555554 PP >> AAA_19 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 0.9 0.00069 0.5 9 60 .. 27 75 .. 21 206 .. 0.60 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 0.00069 AAA_19 9 kekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelre 60 k +++ +++ G+GK++vl+ i+ l+ +g++ +i f+g++ +l++ 23726_FusoPortal_Gene_30 27 KGEIISIVGESGSGKSTVLRSIIGGLLGQGKITSGDI---IFNGKSLLNLSN 75 5678899****************99999987754443...355665555555 PP >> Dynamin_N Dynamin family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.8 2.5 0.00097 0.71 1 21 [. 31 51 .. 31 200 .. 0.87 Alignments for each domain: == domain 1 score: 9.8 bits; conditional E-value: 0.00097 EEEEEBTTTTHHHHHHHHHTS CS Dynamin_N 1 iavvGsqSsGKSSvlnaLlge 21 i +vG+ sGKS+vl +++g 23726_FusoPortal_Gene_30 31 ISIVGESGSGKSTVLRSIIGG 51 789***************995 PP >> AAA_15 AAA ATPase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.1 0.7 0.0024 1.7 16 43 .. 20 48 .. 17 82 .. 0.86 2 ? 2.5 0.7 0.12 85 281 381 .. 117 208 .. 66 212 .. 0.61 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 0.0024 AAA_15 16 dteidldee.ltvliGkNnsGKSsileal 43 ++++ +++ + ++G+ +sGKS++l+ + 23726_FusoPortal_Gene_30 20 NFSLTMQKGeIISIVGESGSGKSTVLRSI 48 5666677766999*************987 PP == domain 2 score: 2.5 bits; conditional E-value: 0.12 AAA_15 281 ekkidkikkfgykgkkneeieikdgeelplnynGsGvqrlillillileaekkdeneekinilaiEEPEahlHPqlqkvlikllk 365 +k + kk ++ +k+ + e+k+ ++++ ++ + G+++ + +++ +++ e + +++ +EP l q +++k + 23726_FusoPortal_Gene_30 117 LNKTEAEKKALFMLEKVRLPEVKNIMNSYPYELSGGMKQRVGIAMALTF-EPE--------LVLADEPTSALDVTTQAQIVKQMM 192 2222222233333333333333366677777777788888888776654.334........688888888888888999999999 PP AAA_15 366 elannnktQviitTHS 381 el ++ +t +ii TH+ 23726_FusoPortal_Gene_30 193 ELRDEFHTGIIIVTHN 208 9999998899999997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (262 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 764 (0.0457157); expected 334.2 (0.02) Passed bias filter: 587 (0.0351245); expected 334.2 (0.02) Passed Vit filter: 109 (0.00652226); expected 16.7 (0.001) Passed Fwd filter: 23 (0.00137626); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 23 [number of targets reported over threshold] # CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.32 # Mc/sec: 2380.13 // [ok]