# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_323.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_323 [L=334] Description: # 348257 # 349258 # -1 # ID=1_323;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.270 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.6e-56 189.8 0.0 6.5e-56 189.5 0.0 1.1 1 Peptidase_S66 LD-carboxypeptidase ------ inclusion threshold ------ 0.017 14.5 0.2 0.034 13.6 0.2 1.4 1 DUF4846 Domain of unknown function (4846) Domain annotation for each model (and alignments): >> Peptidase_S66 LD-carboxypeptidase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 189.5 0.0 7.8e-60 6.5e-56 1 253 [. 6 306 .. 6 313 .. 0.83 Alignments for each domain: == domain 1 score: 189.5 bits; conditional E-value: 7.8e-60 EEEE-SSS.GGGSSH-HHHHHHHHHHHHTTEEEEEGT..TT..TT...CSS-HHHHHHHHHHHHHSTTEEEEEES--SS-GGGG CS Peptidase_S66 1 igvvapSsglakeeekealeravkrleelGlevelgk..eagasn...lagtdeeRaadLneafadpevkaiicarGGygairl 79 igv+ap+++++ +e++ a+k le+ G++++ g+ + ++ + ++++eRa++++++++++++++ ++++GGy++ l 23726_FusoPortal_Gene_323 6 IGVYAPANAAH-IWFEEKYLFAKKQLENIGFKIVEGNlvKDKT-YqgyRTASAKERAEEMMNLVKNKDIDIMMPVIGGYNSGSL 87 89*****9986.55677********************762222.2353455********************************* PP GGGH.HHHHHCS.-EEEE-GGGHHHHHHHHHCHTBSEEES--GGGGGC.....CHHHHHHHHHHHTT................. CS Peptidase_S66 80 lpyldfdaikknpkifvGySDiTalllaltaktglatfhGpmlasllg.....deesleslldlltg................. 141 lpyldf i+k++k f+GySDiTa+++a+ +kt+l+ ++G l +g + + ++l +l+++ 23726_FusoPortal_Gene_323 88 LPYLDFGEIEKSKKKFFGYSDITAIQMAILKKTDLKPIYGGSLIPTFGeyegiSSFLKNTLDNLFFKksysleepefysnklln 171 ***********************************************9755554444444444444499999888888877777 PP .............E..........EEEEEEEEEEEHHHHHCCTTSTTS-TTTTEEEEEEEETTHHHHHHHHHHHHHCCTTGGG- CS Peptidase_S66 142 .............e..........gkveGrllGGnltvlasllgtpylpdldgkIlflEdvseapyridrmLtqlklagvfdkv 202 + g++eG+++ n+++l+s+l ++y+p +++kIl+lE+++ ++ + ++ L lk +gvf++v 23726_FusoPortal_Gene_323 172 aftdewktkkreyTknegwkilneGEIEGEVIVANIATLVSILASEYVPTFRNKILILEEMNATIDSEEKNLNTLKISGVFEGV 255 77666666555440455555666679***********************************9********************** PP SEEEEEEEE....GCCS.---HHHHHHHHHCHHHHCTS-EEEEESESSSBS--BEE CS Peptidase_S66 203 kGillGrft....ease.leqkealeevlkelledlgiPvladldiGHtapnltlp 253 kG+++G+ + + ++ le + +++ke+l++ ++P+++++d+GHt p+l++ 23726_FusoPortal_Gene_323 256 KGLIFGKPEvyddR-NSnLE----YIDIIKEVLGKRDYPIIYNFDCGHTIPSLMIS 306 ******74465431.11366....555556666******************99886 PP >> DUF4846 Domain of unknown function (4846) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.2 4e-06 0.034 71 122 .. 16 66 .. 9 76 .. 0.81 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 4e-06 DUF4846 71 virlraeYlyskkqydkikFeftngfeadyskwaeGkrikvkgnkvswvkka 122 i + Yl++kkq ++i F++++g+ ++ +++ +G+r++ +++++ + + 23726_FusoPortal_Gene_323 16 HIWFEEKYLFAKKQLENIGFKIVEGNLVKDKTY-QGYRTASAKERAEEMMNL 66 5667789**********************7777.799999998888766554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (334 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 658 (0.0393729); expected 334.2 (0.02) Passed bias filter: 473 (0.028303); expected 334.2 (0.02) Passed Vit filter: 32 (0.00191479); expected 16.7 (0.001) Passed Fwd filter: 2 (0.000119674); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.29u 0.25s 00:00:00.54 Elapsed: 00:00:00.33 # Mc/sec: 2942.27 // [ok]