# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_326.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_326 [L=205] Description: # 351672 # 352286 # -1 # ID=1_326;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.229 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-20 73.1 0.3 3.4e-20 72.8 0.3 1.1 1 GyrI-like GyrI-like small molecule binding domain Domain annotation for each model (and alignments): >> GyrI-like GyrI-like small molecule binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.8 0.3 2e-24 3.4e-20 4 154 .. 20 201 .. 17 202 .. 0.90 Alignments for each domain: == domain 1 score: 72.8 bits; conditional E-value: 2e-24 EEEEE--EEEEEEEEEEEHCCCHH...HHHHHHHHHHHHHHHHCTT...........--SSEEEEEEEEE-.STTCCCEEEEEE CS GyrI-like 4 eivelpafrvvgirhrgdyneegg...ipklweelyawaseiklsn...........avspligvssdepe.etedeelkydig 72 ei+++p +++++i++ ++ne+++ +++l++ +y ++ +k ++ +v+pl+g++ +e + ++++lky i 23726_FusoPortal_Gene_326 20 EILKIPKQQFIMIDGIDNPNETNFsnkVSALYSLAYSIKILYKNMMkeaketkikdfTVYPLEGIWKKLEEeKLDKSKLKYTIM 103 89*********************999988888888888888887778888888888************6665666666666666 PP EECCCCC..................CGBTTSEEEEE-SEEEEEEEEECEGGGHHHHHHHHHHTHHHHTT-EEEESEEEEEEECC CS GyrI-like 73 vtveirv..................egpeglefleipageyAvfrhkGpyddlqatyaklygewlpesgyerrdgpsiEiYlsd 138 ++++ + +++f ++++g+ ++++h G+yd+++ +++k+ + + + ++ r +++++EiYl++ 23726_FusoPortal_Gene_326 104 IKQPDFItqknfndalevvkkrkpsILYDEIYFNSLEEGKSIQILHVGSYDNEPISFGKMEE-LMNKLNLVRVSDYHREIYLNN 186 6666544*******************************************************.********************* PP CTSSCGCEEEEEEEEE CS GyrI-like 139 prereeelkteiyipv 154 r++ +k+++++++ 23726_FusoPortal_Gene_326 187 KN-RTSTDKLKTILRY 201 99.**********997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (205 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1020 (0.061034); expected 334.2 (0.02) Passed bias filter: 426 (0.0254907); expected 334.2 (0.02) Passed Vit filter: 22 (0.00131642); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.24u 0.23s 00:00:00.47 Elapsed: 00:00:00.31 # Mc/sec: 1922.39 // [ok]