# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_339.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_339 [L=293] Description: # 369066 # 369944 # -1 # ID=1_339;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.229 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-31 108.9 0.8 2.8e-31 108.9 0.8 2.2 2 YicC_N YicC-like family, N-terminal region 3.1e-28 97.5 7.1 3.1e-28 97.5 7.1 3.6 4 DUF1732 Domain of unknown function (DUF1732) ------ inclusion threshold ------ 0.68 10.0 10.6 0.072 13.1 4.6 2.2 2 MnmE_helical MnmE helical domain Domain annotation for each model (and alignments): >> YicC_N YicC-like family, N-terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 108.9 0.8 5.1e-35 2.8e-31 1 150 [. 1 155 [. 1 156 [. 0.91 2 ? 1.5 0.4 0.062 3.5e+02 81 139 .. 182 237 .. 161 287 .. 0.50 Alignments for each domain: == domain 1 score: 108.9 bits; conditional E-value: 5.1e-35 YicC_N 1 ikSMTGfgraeae.eegkitveikSvNsRfldlslrlpeelraleeeirelikerlsRGkvevsvsleseeeeekalkvneell 83 ++SMTG+++ + e e++ i++eikSvN+++l +++lp +l+ le+ ir i++ +sRG++++++++e+++e+ k+lk++e+l+ 23726_FusoPortal_Gene_339 1 MRSMTGYSKLNYEdENYVINMEIKSVNNKNLATKIKLPYNLNLLESFIRAEIASLISRGSIDFRIEFENKNESLKNLKYDEKLA 84 89***********666*****************************************************9999*********** PP YicC_N 84 kaylealkelaeelg.aeelslaellrlpgvl.eeeee.ede.leeallealeealealvemRerEGeaLk 150 k++++ l++++e+++ + + +l+ l+r gv+ +++ + ++e +e + l+e l+++++++ +EG++L+ 23726_FusoPortal_Gene_339 85 KSCMDILNKIEEDFNdKFSNKLDFLVRNFGVIsQKDLDtDEEkYKEIIDLKLKELLQNFIKTKVEEGNRLR 155 **************647778************42233333333599**********************996 PP == domain 2 score: 1.5 bits; conditional E-value: 0.062 YicC_N 81 ellkaylealkelaeelg.aeelslaellrlpgvleeeeeedeleeallealeealealv 139 + +++l+ +++++++++ +ee l+e+l +++ ++ +ee + l++ +++ +++ 23726_FusoPortal_Gene_339 182 NYKQRLLNNINSIKADINfNEEDILKEVLLFSDRVDITEE----ISRLESHFKQLEHEFE 237 4444555555555544443222223333333333311111....2223333333222222 PP >> DUF1732 Domain of unknown function (DUF1732) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.6 0.0 0.46 2.6e+03 63 84 .. 56 77 .. 47 78 .. 0.82 2 ? -0.1 0.0 0.16 8.8e+02 35 46 .. 101 112 .. 81 143 .. 0.72 3 ! 4.4 0.4 0.0061 34 14 60 .. 149 197 .. 137 205 .. 0.72 4 ! 97.5 7.1 5.6e-32 3.1e-28 1 85 [] 207 292 .. 207 292 .. 0.97 Alignments for each domain: == domain 1 score: -1.6 bits; conditional E-value: 0.46 DUF1732 63 itklvvelKseiekirEqvqNi 84 i++ ++++ e e+ E ++N+ 23726_FusoPortal_Gene_339 56 ISRGSIDFRIEFENKNESLKNL 77 7778899999999999999997 PP == domain 2 score: -0.1 bits; conditional E-value: 0.16 DUF1732 35 svGrkLdFllQE 46 + kLdFl+ 23726_FusoPortal_Gene_339 101 KFSNKLDFLVRN 112 667789998765 PP == domain 3 score: 4.4 bits; conditional E-value: 0.0061 DUF1732 14 EElvRlkshlkelrelleeeesvGrkLdFllQEl..nReanTigskand 60 EE +Rl+ ++ke ++l+++ + +kL + E +R +n i s +d 23726_FusoPortal_Gene_339 149 EEGNRLRVFFKEQLSILKSKLEQVKKLRPQVVENykQRLLNNINSIKAD 197 899***************9999888886554443224556666665555 PP == domain 4 score: 97.5 bits; conditional E-value: 5.6e-32 DUF1732 1 qevallaekldisEElvRlkshlkelrelleeee.svGrkLdFllQElnReanTigskandleitklvvelKseiekirEqvqN 83 +ev l+++++di+EE++Rl+sh+k+l++ +e++e s G+k++F++QE+ Re+nT+g k+n ei+klvve K+e+ek+rEq+ N 23726_FusoPortal_Gene_339 207 KEVLLFSDRVDITEEISRLESHFKQLEHEFETDEiSQGKKIEFIFQEVFREFNTMGVKSNMYEISKLVVESKNELEKMREQIMN 290 699***************************9876599*********************************************** PP DUF1732 84 ie 85 ie 23726_FusoPortal_Gene_339 291 IE 292 *8 PP >> MnmE_helical MnmE helical domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.2 0.7 0.12 6.7e+02 48 82 .. 61 98 .. 44 179 .. 0.60 2 ? 13.1 4.6 1.3e-05 0.072 21 96 .. 167 246 .. 160 292 .. 0.66 Alignments for each domain: == domain 1 score: 0.2 bits; conditional E-value: 0.12 xxxxxxxxx.xx.xxxxxxx.xxxxxxxxxxxxxxxxx RF MnmE_helical 48 leaaiDFpe.ed.leelsee.elaekleelkeelekll 82 + +i+F+ ++ l++l+ + +la+++ ++ +++e+ 23726_FusoPortal_Gene_339 61 IDFRIEFENkNEsLKNLKYDeKLAKSCMDILNKIEEDF 98 55566664421123333332445555555555554433 PP == domain 2 score: 13.1 bits; conditional E-value: 1.3e-05 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF MnmE_helical 21 aalrqleGelskkikelrekllellaeleaaiDFpeed.leelsee........elaekleelkeelekllatakrgellreGi 95 + l+q++ + +++ +++ll+++ ++a i+F eed l+ e ++ e++++l+++ ++l +++++ e+ ++G 23726_FusoPortal_Gene_339 167 SKLEQVKKLRPQVVENYKQRLLNNINSIKADINFNEEDiLK----EvllfsdrvDITEEISRLESHFKQLEHEFETDEI-SQGK 245 556666666677899*********************99433....2233456679999999999999999999998776.4555 PP x RF MnmE_helical 96 k 96 k 23726_FusoPortal_Gene_339 246 K 246 5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (293 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1564 (0.0935854); expected 334.2 (0.02) Passed bias filter: 375 (0.022439); expected 334.2 (0.02) Passed Vit filter: 34 (0.00203447); expected 16.7 (0.001) Passed Fwd filter: 3 (0.000179512); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.28u 0.25s 00:00:00.53 Elapsed: 00:00:00.33 # Mc/sec: 2581.09 // [ok]