# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_34.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_34 [L=131] Description: # 48137 # 48529 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.267 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.41 11.0 4.7 0.62 10.4 4.6 1.4 1 DUF3417 Protein of unknown function (DUF3417) 1.2 9.9 17.4 2.9 8.7 3.4 2.4 2 DUF5339 Family of unknown function (DUF5339) 2.2 7.7 15.2 2.6 7.4 15.2 1.0 1 DUF1002 Protein of unknown function (DUF1002) 7 4.7 13.9 7.5 4.6 13.9 1.0 1 CDC45 CDC45-like protein 8.5 4.9 9.9 10 4.7 9.9 1.2 1 O-antigen_lig O-antigen ligase like membrane protein 9.4 5.4 10.7 1.2 8.3 6.6 1.6 2 DUF4820 Domain of unknown function (DUF4820) 10 6.3 9.6 0.68 10.0 1.8 2.1 2 SH3BGR SH3-binding, glutamic acid-rich protein Domain annotation for each model (and alignments): >> DUF3417 Protein of unknown function (DUF3417) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 4.6 0.00026 0.62 22 88 .. 40 109 .. 35 123 .. 0.79 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.00026 DUF3417 22 eareLFksldpelweevghnPvklLe...evsqerleelaedeeflarleavveefeeyleektwfqkka 88 e re +++ld++ +e + v++ e+++e+l++++ede+++ +++++ e+++++l+ + ++++ 23726_FusoPortal_Gene_34 40 EKREYYEELDKKKEKEAKGYQVEMTAeeaETEKEKLANMTEDEKLMYKVDKAKEKIDNMLDIAKKARQEE 109 67888999999999999999999986222588999************************99885555544 PP >> DUF5339 Family of unknown function (DUF5339) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 5.5 0.0034 8.1 12 50 .. 44 82 .. 41 85 .. 0.85 2 ? 8.7 3.4 0.0012 2.9 10 44 .. 93 127 .. 89 129 .. 0.92 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.0034 DUF5339 12 vdkliakaekqpgtkaqadaikkqleqsKkqilalpkeq 50 +++ ++k +++++++ q++++ + e++K++++ +++++ 23726_FusoPortal_Gene_34 44 YYEELDKKKEKEAKGYQVEMTAEEAETEKEKLANMTEDE 82 5555677778899***********************997 PP == domain 2 score: 8.7 bits; conditional E-value: 0.0012 DUF5339 10 kevdkliakaekqpgtkaqadaikkqleqsKkqil 44 +++d++++ a+k + + +++++k+q e++ k i 23726_FusoPortal_Gene_34 93 EKIDNMLDIAKKARQEELDVEETKNQVEEALKNIT 127 689**************************999986 PP >> DUF1002 Protein of unknown function (DUF1002) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 15.2 0.0011 2.6 122 220 .. 23 121 .. 15 122 .. 0.94 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.0011 DUF1002 122 GekldeekkeaAneeLvttselaekigsekaaelvaevkeevakeklkteeeikkiveevanelninlsdeqiqqivnllkkiqk 206 +++++++ + A++ L+ e e+++++k +e+ e a+e ++++e++ ++ e+ ++++ +e+i+++ +++kk ++ 23726_FusoPortal_Gene_34 23 ANNITNNEDRDAMQILEEKREYYEELDKKKEKEAKGYQVEMTAEEAETEKEKLANMTEDEKLMYKVDKAKEKIDNMLDIAKKARQ 107 68999999***************************************************************************** PP DUF1002 207 ldldlkelkkqlkd 220 +ld++e k+q+++ 23726_FusoPortal_Gene_34 108 EELDVEETKNQVEE 121 ***********986 PP >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.6 13.9 0.0031 7.5 97 193 .. 19 108 .. 10 130 .. 0.46 Alignments for each domain: == domain 1 score: 4.6 bits; conditional E-value: 0.0031 CDC45 97 sseekegivvfdDgdieeeleeereayealeeeeesdedd......eeeeedddeeeeeeeeedeeeeeedeeeskkkrk..... 170 +++ ++i+ +D d + lee+re ye+l++++e++ + e+ e e+e+ + +e+e+ + +k k+k 23726_FusoPortal_Gene_34 19 CTNSANNITNNEDRDAMQILEEKREYYEELDKKKEKEAKGyqvemtA---EEA-ETEKEKLANMTEDEKLMYKVDKAKEKidnml 99 556778888999999999999*********99999974445442211...111.1111111112222222222222222222222 PP CDC45 171 ..sksdeeeeeedeeersrkrrrse 193 + k+ r+e 23726_FusoPortal_Gene_34 100 diA----------------KKARQE 108 221................121111 PP >> O-antigen_lig O-antigen ligase like membrane protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.7 9.9 0.0043 10 245 343 .. 5 96 .. 1 126 [. 0.55 Alignments for each domain: == domain 1 score: 4.7 bits; conditional E-value: 0.0043 O-antigen_lig 245 kklllaiillvligillaiypyspiyrrkelkekeieiksekkeeeeikneikenykseglk.eavleqyeyandkqfsqellke 328 lll++ + li+ +++++++++ + r+++++ e + + ++ ++++++e ++ y++e ea +e+++ an + + ++k 23726_FusoPortal_Gene_34 5 EILLLSLSMTSLIACTNSANNITNNEDRDAMQILEEKREYYEELDKKKEKE-AKGYQVEMTAeEAETEKEKLANMTEDEKLMYK- 87 344678888888888889999999999999998777666666666666666.55565554444333333333333322222222. PP O-antigen_lig 329 eveslllsnRdlqlk 343 +++ + +++ 23726_FusoPortal_Gene_34 88 ------VDKAKEKID 96 ......222222222 PP >> DUF4820 Domain of unknown function (DUF4820) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.3 6.6 0.00052 1.2 144 221 .. 15 92 .. 2 101 .. 0.55 2 ? -0.4 0.3 0.24 5.8e+02 182 202 .. 101 121 .. 82 129 .. 0.45 Alignments for each domain: == domain 1 score: 8.3 bits; conditional E-value: 0.00052 DUF4820 144 stliCsrpgrsipvsseldnsartlterksekesaesseskkrnkeer.daeseeessede.eeeetvkellekyanens 221 s + C+ ++ ++ d +a ++ e+k e ++ +++++k+ k + + + ee ++e+e + t +e+l ++++ 23726_FusoPortal_Gene_34 15 SLIACTNSA--NNITNNEDRDAMQILEEKREYYEELDKKKEKEAKGYQvEMTAEEAETEKEkLANMTEDEKLMYKVDKAK 92 446685444..445667777777777777776666655555555533303333333333334778888888766665544 PP == domain 2 score: -0.4 bits; conditional E-value: 0.24 DUF4820 182 eskkrnkeerdaeseeessed 202 kk ++ee d e++++++e+ 23726_FusoPortal_Gene_34 101 IAKKARQEELDVEETKNQVEE 121 233333334444444444433 PP >> SH3BGR SH3-binding, glutamic acid-rich protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.0 1.8 0.00029 0.68 8 59 .. 19 69 .. 13 83 .. 0.77 2 ? 0.8 1.3 0.21 5e+02 20 52 .. 92 125 .. 81 130 .. 0.59 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 0.00029 -SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHCST-CCCS CS SH3BGR 8 asssgskeikkkqqevlriLdakkiefdevDitkdeeerelmrenaapeekk 59 + s+++ + + ++ ++iL+ k+ ++e+D k++e + + e +a ee + 23726_FusoPortal_Gene_34 19 CTNSANNITNNEDRDAMQILEEKREYYEELDKKKEKEAKGYQVEMTA-EEAE 69 46788888899999******************998888877666553.3333 PP == domain 2 score: 0.8 bits; conditional E-value: 0.21 HHHHHHHHH.HTT--EEEEETTT-HHHHHHHHHC CS SH3BGR 20 qqevlriLd.akkiefdevDitkdeeerelmren 52 ++++ ++Ld akk + +e+D+ + +++ e+ +n 23726_FusoPortal_Gene_34 92 KEKIDNMLDiAKKARQEELDVEETKNQVEEALKN 125 4445555554666777777777755554444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (131 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 3838 (0.229655); expected 334.2 (0.02) Passed bias filter: 786 (0.0470321); expected 334.2 (0.02) Passed Vit filter: 93 (0.00556486); expected 16.7 (0.001) Passed Fwd filter: 13 (0.000777884); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.27u 0.25s 00:00:00.52 Elapsed: 00:00:00.32 # Mc/sec: 1190.07 // [ok]