# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_362.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_362 [L=2381] Description: # 396267 # 403409 # -1 # ID=1_362;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.318 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.7e-20 72.5 1.6 3.7e-20 72.5 1.6 6.5 7 Autotransporter Autotransporter beta-domain Domain annotation for each model (and alignments): >> Autotransporter Autotransporter beta-domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.2 6.8 0.035 5.8e+02 32 123 .. 786 888 .. 755 898 .. 0.73 2 ! 3.3 3.4 0.0031 52 6 104 .. 905 1000 .. 901 1014 .. 0.87 3 ? -3.5 3.8 0.35 5.9e+03 13 73 .. 1056 1114 .. 1044 1124 .. 0.72 4 ? -6.2 2.3 1 1.7e+04 58 90 .. 1366 1397 .. 1355 1415 .. 0.58 5 ? -10.2 9.9 1 1.7e+04 51 75 .. 1614 1638 .. 1514 1702 .. 0.63 6 ? -4.9 5.7 0.94 1.6e+04 15 94 .. 1667 1743 .. 1649 1763 .. 0.65 7 ! 72.5 1.6 2.2e-24 3.7e-20 7 254 .. 2109 2359 .. 2105 2362 .. 0.87 Alignments for each domain: == domain 1 score: -0.2 bits; conditional E-value: 0.035 EEEEETCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEE..........ECTTEEEEEEEEEEEEEEEEEEECEETT. CS Autotransporter 32 aDyrlgdnlrlGvafgygrssadvdgaggsgdvdgyslglYgtyq..........gagglyldgvagygwydndtrrsvdlgg. 104 a++ + ++ +G+++ ++ ++++ +g++++ + ++glY+ + + + g + y++ +n ++ +v+ g 23726_FusoPortal_Gene_362 786 AEINVAGRQSIGLYAKGNTPQTKTELKAGTVTASNSGVGLYADKStvrlgggtdpLNLIANNGGLLFYNYESN-NKNNVANGVf 868 5666789999*****************************************6643222223335566677776.4445545555 PP .CCEEEEEEEEEEEEEEEEE CS Autotransporter 105 .lsdtakgdydgnglsasle 123 l+++ k++ ++ g+++ l 23726_FusoPortal_Gene_362 869 nLAGNVKATVNNGGYAFYLK 888 66777777777777776654 PP == domain 2 score: 3.3 bits; conditional E-value: 0.0031 EEEEEEEE-BTTB--EEEEEEEEEEEEEEEETCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECTTEEEEEEE CS Autotransporter 6 lggrgkqdgtdgaagydadtggvqlGaDyrlgdnlrlGvafgygrssadvdgaggsgdvdgyslglYgtyqgagglyldgva 87 + + + ++++g +++ ++gg+ + +D+ g+n+rl + ++ +++ g++ ++++ ++++ +Y+ y+ ggl +d + 23726_FusoPortal_Gene_362 905 FNSMFDDKNSTGKLDVTLNSGGTLMVLDRPNGGNIRLSNVANTSSIVSSL-GNRVNINSASTKYKVYAVYR--GGLQIDQNV 983 666677789999999*********************************99.********************..********* PP EEEEEEEEEEEECEETT CS Autotransporter 88 gygwydndtrrsvdlgg 104 + + +n+t+ ++ ++ 23726_FusoPortal_Gene_362 984 NLDNDSNSTNPDAFYKV 1000 ****9998888776655 PP == domain 3 score: -3.5 bits; conditional E-value: 0.35 E-BTTB--EEEEEEEEEEEEEEEETCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEE CS Autotransporter 13 dgtdgaagydadtggvqlGaDyrlgdnlrlGvafgygrssadvdgaggsgdvdgyslglYg 73 +gt+++ + +d+ +++ D+ ++++ ++G++ g g+s++ +++++g+++v +++lYg 23726_FusoPortal_Gene_362 1056 SGTKTTTAMAGDFVTLTNNKDIEVTGDRAVGMF-GAGGSKV-LNNTNGTITVGKEGVALYG 1114 445555555577777777778888888777755.5555555.3699999999999999998 PP == domain 4 score: -6.2 bits; conditional E-value: 1 TTEEEEEEEEEEEEEEEEEECTTEEEEEEEEEE CS Autotransporter 58 aggsgdvdgyslglYgtyqgagglyldgvagyg 90 ++g++++ + +++lY t + +g g++++g 23726_FusoPortal_Gene_362 1366 NNGNITIGTNGAALYSTGA-TGTINNTGTLTLG 1397 4555555555555555555.4444444444444 PP == domain 5 score: -10.2 bits; conditional E-value: 1 EEEEETTTTEEEEEEEEEEEEEEEE CS Autotransporter 51 ssadvdgaggsgdvdgyslglYgty 75 +s ++ g++++++ + g Yg y 23726_FusoPortal_Gene_362 1614 TSNTNSNVIGNTKITSSGNGNYGYY 1638 2222222222333333333333322 PP == domain 6 score: -4.9 bits; conditional E-value: 0.94 BTTB--EEEEEEEEEEEEEEEETCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECTTEEEEEEEEEEEEEE CS Autotransporter 15 tdgaagydadtggvqlGaDyrlgdnlrlGvafgygrssadvdgaggsgdvdgyslglYgtyqgagglyldgvagygwydn 94 + g+ g + ++++G ++ +G+a+gy++s+ ++++ g++ + +++ ++ ++ g+y++gv++ + +d 23726_FusoPortal_Gene_362 1667 RAGGTGIARNAATITVGKTDLENELYSIGMAAGYTDSKDTSKNRVGHVINT---GTINVGFDNSIGMYASGVGSIAENDG 1743 556666667777777776666678888999999999988765555554322...23334444455566666666666666 PP == domain 7 score: 72.5 bits; conditional E-value: 2.2e-24 EEEEE.EE-BTTB--EEEEEEEEEEEEEEEE.TCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEE......ECTT CS Autotransporter 7 ggrgk.qdgtdgaagydadtggvqlGaDyrl.gdnlrlGvafgygrssadvdgaggsgdvdgyslglYgtyq......gagg 80 g++g+ +t g+ +y+++ +gv+ + + + G++ g ++++++ ++ g+++ + ++ + + + ++ + 23726_FusoPortal_Gene_362 2109 GTNGEyKTSTAGIKDYKYHAYGVAYVHESEDiKLGRGTGWYTGIVHNTFKF-KDIGKSKEQMLQAKVGLLKSvpfddnNSLN 2189 44444336778888888887776544444434777889************9.****************************** PP EEEEEEEEEEEEEEEEEEECEETTCCEEEEEEEEEEEEEEEEEEEE-CECCGCEEEEEEEEEEEEEEEEEEEE-SS-TTSEE CS Autotransporter 81 lyldgvagygwydndtrrsvdlgglsdtakgdydgnglsasleaGydfklsggwtlePqaqltysrlkldgftesggaaalt 162 ++++g + +g++++ +r++ + + +ak++y ++g++ e+G++f+ls+++ l P+a l + +++ +e++g++ l+ 23726_FusoPortal_Gene_362 2190 WTISGDIFVGRNKM--HRKFLVVDEIFNAKSKYYTYGIGIKNEIGKEFRLSESFILRPYAALKLEYGRVSKIREKSGEVRLE 2269 **************..88888878888******************************************************* PP EEEEEEEEEEEEEEEEEEEECCCTTECEEEEEEEEEEEECEE---EEEEEETTECCEEEE--...--BCEEEEEEEEEEEEE CS Autotransporter 163 vdsqdadsltgrlGlrlsydfdlgggkltpylraawqhefgddgktstasfagastagsftvfgaelgrdslelgaGleaql 244 v+ +d+ s++ ++G++l+ + +g +l+ l +a+++e+g +++ + + + t++ + + + e+ + +++++ +l++ + 23726_FusoPortal_Gene_362 2270 VKHNDYFSVRPEIGAELGFKHYFGMKALKTTLGVAYENELGRVANAKNKA-RVGYTSAGWYNLRGEKEDRRGNVKFDLNVGI 2350 ***************************************88777777777.556666668888999**************** PP CTTEEEEEEE CS Autotransporter 245 sdnlslylny 254 dn+ +++++ 23726_FusoPortal_Gene_362 2351 -DNTRVGVTA 2359 .666666554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2381 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 567 (0.0339277); expected 334.2 (0.02) Passed bias filter: 272 (0.0162757); expected 334.2 (0.02) Passed Vit filter: 24 (0.00143609); expected 16.7 (0.001) Passed Fwd filter: 2 (0.000119674); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.82u 0.35s 00:00:01.17 Elapsed: 00:00:00.48 # Mc/sec: 14420.09 // [ok]