# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_363.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_363 [L=185] Description: # 403430 # 403984 # -1 # ID=1_363;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.286 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-24 85.1 0.2 4.6e-24 84.5 0.2 1.3 1 OmpA OmpA family ------ inclusion threshold ------ 0.051 14.0 0.0 0.082 13.4 0.0 1.3 1 DUF4473 Domain of unknown function (DUF4473) 0.061 13.5 0.2 0.1 12.8 0.2 1.3 1 Chi-conotoxin chi-Conotoxin or t superfamily Domain annotation for each model (and alignments): >> OmpA OmpA family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 84.5 0.2 8.2e-28 4.6e-24 1 95 [] 70 165 .. 70 165 .. 0.97 Alignments for each domain: == domain 1 score: 84.5 bits; conditional E-value: 8.2e-28 .B-TTS--B-GGGHHHHHHHHHHHHS-S--EEEEE---S---HHHHHHHHHHHHHHHHHHHHHTTSSGGGE.EEEE-TT----- CS OmpA 1 yFapgsseLtpkaksaldkiaellkkpeqkilveGhtdaagseernweLSqkRAeaVanylqnegvppsri.svsgyGaerpia 83 +F++++s+++p++++ l+ i e+++++++ i++ Ghtd+ gs+++n +LS +RAe+V++ l ++g++++ri ++++G+e+pia 23726_FusoPortal_Gene_363 70 NFDFDKSNVKPQYYDLLNNIKEFVEQNNYEITIVGHTDSIGSNAYNFKLSRRRAESVKAKLLEFGLSEDRIvGIEAMGEEQPIA 153 5************************77777*****************************************778********** PP ---------EE. CS OmpA 84 anntaekrarnr 95 +n+t+e+ra+nr 23726_FusoPortal_Gene_363 154 TNATKEGRAQNR 165 **********98 PP >> DUF4473 Domain of unknown function (DUF4473) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 0.0 1.5e-05 0.082 4 38 .. 123 153 .. 120 174 .. 0.76 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 1.5e-05 DUF4473 4 aeeakaeLvaaGlsekaadglvkiaekfksefaka 38 ae +ka+L+ Glse + g+ +++e+ + a 23726_FusoPortal_Gene_363 123 AESVKAKLLEFGLSEDRIVGIEAMGEE----QPIA 153 788***********************9....2333 PP >> Chi-conotoxin chi-Conotoxin or t superfamily # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 0.2 1.8e-05 0.1 6 39 .. 10 43 .. 7 54 .. 0.90 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 1.8e-05 Chi-conotoxin 6 VFvILLLLiaSaPsvdaqpktkddvplaSfhdna 39 + v+L+LLi S P+ +q t ++ S++ na 23726_FusoPortal_Gene_363 10 IMVMLFLLIFSLPALAVQALTTTQMRENSIRINA 43 689*************************999877 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (185 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 745 (0.0445787); expected 334.2 (0.02) Passed bias filter: 509 (0.0304572); expected 334.2 (0.02) Passed Vit filter: 42 (0.00251316); expected 16.7 (0.001) Passed Fwd filter: 3 (0.000179512); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.23u 0.23s 00:00:00.46 Elapsed: 00:00:00.31 # Mc/sec: 1734.84 // [ok]