# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_375.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_375 [L=452] Description: # 411620 # 412975 # -1 # ID=1_375;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.307 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-118 396.7 34.5 1.7e-118 396.2 34.5 1.2 1 Na_Ala_symp Sodium:alanine symporter family Domain annotation for each model (and alignments): >> Na_Ala_symp Sodium:alanine symporter family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 396.2 34.5 1e-122 1.7e-118 5 385 .. 53 451 .. 49 451 .. 0.94 Alignments for each domain: == domain 1 score: 396.2 bits; conditional E-value: 1e-122 Na_Ala_symp 5 kkkksegevssfqAlatalaarvGtGniaGvatAialGGpGAvfWmwvvallGmatkfvEstLaqlYkekdekgevrGGpayyi 88 k++k+++++ss +++ + +a rvG GniaGv Ai++GG+G++fWmw+va+lG+at+f+Es La++Y++k+++g+++GG+ ++i 23726_FusoPortal_Gene_375 53 KNEKGKHGISSLETFFLGTACRVGAGNIAGVVAAISVGGAGSIFWMWLVAMLGSATAFIESSLAVIYRKKEKDGSYTGGTPFII 136 45569******************************************************************************* PP Na_Ala_symp 89 ekglkkkwlavlfavlliialglginavqansiasaleea.........feveklvvgivlavllalvil...ggikriakvae 160 ek+l+++wl+v++a++ ++++ +g++ v +nsi+ ++ + f + + +i++a+l+a++i+ ++ +i + + 23726_FusoPortal_Gene_375 137 EKRLNMRWLGVIYALASVVCY-FGVTQVMSNSITGSIISVytwgadnkfF-NLQNISSIAVAILVAYIIFfskSKKDSIVESLN 218 ******************999.9*************99975555555532.3348999999999999998322334579999** PP Na_Ala_symp 161 vvvPvmailYilvalvviilniekvpevlalifksAFgleavagGilgaairlGvkRglfSneAGlGsapiaaAaaevshpvkq 244 ++vP+mai+Y++++++++++n++++p+++ +i+++AFg+++v+gG++ga++++Gv+RglfSneAG G++ aaAa +++ p+kq 23726_FusoPortal_Gene_375 219 KIVPFMAIIYVVAVIYILVTNLTHIPAMIGNIISQAFGTREVLGGTFGAVVMNGVRRGLFSNEAGSGNSNYAAAAVHIDIPAKQ 302 ************************************************************************************ PP Na_Ala_symp 245 GlvqalgvfidtlvvCtatalvill........segveltqaalesvlgslgslfvaialllFafstilgnyyygeknleyllg 320 G+vqa+gvfidtlv+C+ata+++ll +g+ l qaa++ +l+ +gslfv i +++F++stil+ ++yg+++++++++ 23726_FusoPortal_Gene_375 303 GMVQAFGVFIDTLVICSATAFIVLLapesvisgLSGMGLFQAAMSYHLNGVGSLFVVILMFFFCISTILAVAFYGRSAVNFIHE 386 *************************777766666*************************************************9 PP Na_Ala_symp 321 kkkklliyrvlvlllvfvgavaslelvwnlaDiavglmallnliaillLskvvvkalkdYekqkk 385 +k +++y+++++l++++g +++ ++w+laD+++g+m+++n+++i+ ++k+++ +lk+Yek++k 23726_FusoPortal_Gene_375 387 SKYLNIVYQAILILMIYIGGIKQDIFIWSLADFGLGIMTVINILVIIPIAKPALDSLKSYEKELK 451 7777*********************************************************9875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (452 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1019 (0.0609742); expected 334.2 (0.02) Passed bias filter: 266 (0.0159167); expected 334.2 (0.02) Passed Vit filter: 23 (0.00137626); expected 16.7 (0.001) Passed Fwd filter: 5 (0.000299186); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.28u 0.23s 00:00:00.51 Elapsed: 00:00:00.31 # Mc/sec: 4238.64 // [ok]