# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_388.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_388 [L=240] Description: # 426527 # 427246 # 1 # ID=1_388;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.268 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-29 103.5 18.6 1.4e-29 103.3 18.6 1.0 1 DUF1275 Protein of unknown function (DUF1275) Domain annotation for each model (and alignments): >> DUF1275 Protein of unknown function (DUF1275) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 103.3 18.6 8.3e-34 1.4e-29 2 190 .. 25 223 .. 24 225 .. 0.88 Alignments for each domain: == domain 1 score: 103.3 bits; conditional E-value: 8.3e-34 DUF1275 2 llllafvaGllDavaflaaggvfvsaqTGNtvllglalaegnwkaalaalvsllaFvlGaalagllarrg.....grrrrlvll 80 ++l+++aG+ +++ +g+vfv+aqTGN+v+l+l++a+ + + ++ al+++la+++G+++a+++ + ++r++l+ 23726_FusoPortal_Gene_388 25 FCMLMLIAGFWGGFTYSLRGRVFVNAQTGNLVFLSLGIASWDIALIKNALATFLAYFCGIITAEFISKEInkisfLIWERILLF 108 689***********************************8766677777******************97655655444******* PP DUF1275 81 leallllaaallvpagsvsp..lalallafamGlqnalfsrlsgaeitttvlTgnltdlgidlarll.kkrk....larnrrla 157 ++ +++++++++ + ++ p ++++ +af +++q +f + +g +++t ++T+ + ++ ++++r+l ++++ +l 23726_FusoPortal_Gene_388 109 FSLIVTICLGFIPE-TA--PfeFTNFSIAFTAAMQFNTFEKAHGMGMATPFCTNHVKQASANFVRFLkTRDSnklrI-SLSHLS 188 ************54.44..344*********************************************7444235541.667999 PP DUF1275 158 iilafllGavvGallvks..aaalwlaaallllva 190 +il+f+ Ga ++ +l + +a+w+++ + ++++ 23726_FusoPortal_Gene_388 189 MILSFITGATLSIFLGRFflGKAIWFSSFFIVITL 223 ****************************9998875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (240 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 797 (0.0476903); expected 334.2 (0.02) Passed bias filter: 305 (0.0182504); expected 334.2 (0.02) Passed Vit filter: 25 (0.00149593); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.23u 0.22s 00:00:00.45 Elapsed: 00:00:00.31 # Mc/sec: 2250.61 // [ok]