# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_392.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_392 [L=390] Description: # 430765 # 431934 # -1 # ID=1_392;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.223 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.8e-07 29.0 0.0 8.4e-06 25.7 0.0 2.3 2 PilN Fimbrial assembly protein (PilN) 0.00018 21.4 2.0 0.00052 19.9 2.0 1.8 1 DUF4446 Protein of unknown function (DUF4446) 0.00044 19.9 4.2 0.0014 18.3 4.2 1.8 1 GrpE GrpE 0.001 18.7 3.1 0.001 18.7 3.1 2.0 2 DivIC Septum formation initiator 0.0017 18.6 0.2 0.0038 17.5 0.2 1.6 1 DUF2681 Protein of unknown function (DUF2681) 0.0075 16.0 4.8 0.014 15.1 4.8 1.4 1 IncA IncA protein ------ inclusion threshold ------ 0.017 15.0 2.1 0.017 15.0 2.1 2.6 3 Sec20 Sec20 0.028 14.3 0.2 0.073 13.0 0.2 1.7 1 FtsL Cell division protein FtsL 0.041 13.9 2.9 0.12 12.4 2.9 1.7 1 TolA_bind_tri TolA binding protein trimerisation 0.062 12.8 0.9 0.14 11.7 0.2 1.8 2 SUR7 SUR7/PalI family 0.13 12.1 10.6 0.025 14.5 6.5 1.8 2 Ax_dynein_light Axonemal dynein light chain 0.17 12.3 1.9 0.39 11.1 0.8 2.1 2 DUF4140 N-terminal domain of unknown function (DUF41 0.18 12.3 3.5 0.68 10.4 3.5 2.0 1 Syntaxin-6_N Syntaxin 6, N-terminal 0.25 10.5 2.9 0.39 9.9 2.9 1.2 1 DUF3450 Protein of unknown function (DUF3450) 0.31 10.9 3.9 0.56 10.1 1.2 2.5 3 DUF1664 Protein of unknown function (DUF1664) 0.44 10.8 2.3 0.94 9.7 2.3 1.5 1 DUF3399 Domain of unknown function (DUF3399) 7.1 7.0 15.5 0.19 12.1 6.1 3.1 3 FlaC_arch Flagella accessory protein C (FlaC) Domain annotation for each model (and alignments): >> PilN Fimbrial assembly protein (PilN) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.5 0.0 0.63 6.2e+02 36 63 .. 16 44 .. 14 72 .. 0.71 2 ! 25.7 0.0 8.5e-09 8.4e-06 2 76 .. 315 386 .. 314 388 .. 0.83 Alignments for each domain: == domain 1 score: 0.5 bits; conditional E-value: 0.63 PilN 36 deVaefmrnLegspfft..nidlssaeqkt 63 ++V + ++nLe++ ff+ +i+++++ ++ 23726_FusoPortal_Gene_392 16 KRVRNTVLNLENK-FFSifKIQIENIINEE 44 6899999999975.6666899998887777 PP == domain 2 score: 25.7 bits; conditional E-value: 8.5e-09 PilN 2 lldaLsraiPdgvwltslsqegd.qltieGsAqsndeVaefmrnLegspfftnidlssaeqkttkgkklveFtitv 76 ll++Ls P+gv ++s++ +++ +ieGs+ d+V +f++n+ +s+ f+ + + +k+ + eF++++ 23726_FusoPortal_Gene_392 315 LLEELSYLCPNGVKISSIEYDENkIFNIEGSTGKIDNVVKFLENITNSKNFKLYNYDYILRKE----NEIEFKLEI 386 89*****************77773669************************966666666666....456666665 PP >> DUF4446 Protein of unknown function (DUF4446) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.9 2.0 5.3e-07 0.00052 5 71 .. 241 305 .. 237 314 .. 0.83 Alignments for each domain: == domain 1 score: 19.9 bits; conditional E-value: 5.3e-07 DUF4446 5 vllvlvvillillivllvklkklkkkykklmkgkdgksleellkekleeveelkeeneelekrieel 71 ll++ +i+++ +i+l+ +++k ++k+++l + +sle+ ++e +e+ee+++++++l + ie+ 23726_FusoPortal_Gene_392 241 TLLIISIITVLSTIILYHNIHKSEEKLEQLEA--ESSSLEDEINEARNEMEEIEKQHKDLLEYIEKE 305 56777888888888888888888888888854..899**********************99999875 PP >> GrpE GrpE # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.3 4.2 1.4e-06 0.0014 14 81 .. 260 332 .. 255 370 .. 0.72 Alignments for each domain: == domain 1 score: 18.3 bits; conditional E-value: 1.4e-06 HCCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHH.....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS GrpE 14 eeeleeeleelekevkelkekllrllaefenlrkrtek.....ekeeakkfaiekfakdLLpvlDnleralks 81 + ++ee+le+le+e +l+++++++++e+e+++k++++ ekee k+f+i++++++L ++ n + + 23726_FusoPortal_Gene_392 260 IHKSEEKLEQLEAESSSLEDEINEARNEMEEIEKQHKDlleyiEKEEYKDFKISSLLEELSYLCPNGVKISSI 332 78899******************************98644455888999999999999987777666665554 PP >> DivIC Septum formation initiator # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.7 0.1 5 4.9e+03 25 57 .. 36 67 .. 33 70 .. 0.66 2 ! 18.7 3.1 1e-06 0.001 24 72 .. 258 306 .. 239 308 .. 0.89 Alignments for each domain: == domain 1 score: -2.7 bits; conditional E-value: 5 HHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXX CS DivIC 25 eiaalqaelaklkaeneeLeaevkdLksdedyi 57 +i+ + +e +++ + +++Le ++ +++d++ 23726_FusoPortal_Gene_392 36 QIENIINEEDRKEKIEDRLEVIFPRY-NSDDFV 67 67777777777777777777666666.555555 PP == domain 2 score: 18.7 bits; conditional E-value: 1e-06 HHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXXXXXXXXXXXXXX CS DivIC 24 qeiaalqaelaklkaeneeLeaevkdLksdedyieerARselglvkpgE 72 +i++ +++l++l ae +Le+e+++ +++ + ie++ ++ l ++ + E 23726_FusoPortal_Gene_392 258 HNIHKSEEKLEQLEAESSSLEDEINEARNEMEEIEKQHKDLLEYIEKEE 306 578999**************************************99988 PP >> DUF2681 Protein of unknown function (DUF2681) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.5 0.2 3.9e-06 0.0038 5 61 .. 240 296 .. 236 318 .. 0.87 Alignments for each domain: == domain 1 score: 17.5 bits; conditional E-value: 3.9e-06 DUF2681 5 allvgliaavlllvaylswqlkkarkknaklqaekqqlkvekavaeaevknakvkqk 61 ++l+ +++ +l l+ ++k+++k+++l+ae l+ e++ a +e++ +++ k 23726_FusoPortal_Gene_392 240 YTLLIISIITVLSTIILYHNIHKSEEKLEQLEAESSSLEDEINEARNEMEEIEKQHK 296 566666666666678899********************************9988877 PP >> IncA IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.1 4.8 1.5e-05 0.014 48 126 .. 242 317 .. 240 321 .. 0.82 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 1.5e-05 IncA 48 lgvvLlalgllllllkapvlqsedekieesrlqeelselesrlaeleeeleqleerlaeleaelkdleedleslqeelk 126 l +++++ +l+ ++l+++ + se+ k+e+ l++e s+le++++e+ e+e++e++ ++l++ +++ e +++++l+ 23726_FusoPortal_Gene_392 242 LLIISIITVLSTIILYHNIHKSEE-KLEQ--LEAESSSLEDEINEARNEMEEIEKQHKDLLEYIEKEEYKDFKISSLLE 317 567889999999999999888766.5555..7*******************************9988766666665555 PP >> Sec20 Sec20 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.8 0.1 5.7 5.6e+03 7 45 .. 130 169 .. 126 178 .. 0.49 2 ? 15.0 2.1 1.7e-05 0.017 16 69 .. 255 309 .. 248 317 .. 0.90 3 ? -2.3 0.0 4.2 4.1e+03 42 69 .. 336 363 .. 330 368 .. 0.61 Alignments for each domain: == domain 1 score: -2.8 bits; conditional E-value: 5.7 Sec20 7 Teslraisqllsqevqq.Seenleeldastkslekleeey 45 e ++ + + ++++ S+ l + + + ++e++y 23726_FusoPortal_Gene_392 130 SETMLVVTEYMNNNILDiSTFKLSKSSFDNDEEVDIEDKY 169 5555555555555553214444444433334444555555 PP == domain 2 score: 15.0 bits; conditional E-value: 1.7e-05 Sec20 16 llsqevqqSeenleeldastkslek.leeeykqvedvlsrskklvkklerrdktd 69 +l +++++See le+l+a + sle+ ++e ++e++ ++ k+l++ +e+++ +d 23726_FusoPortal_Gene_392 255 ILYHNIHKSEEKLEQLEAESSSLEDeINEARNEMEEIEKQHKDLLEYIEKEEYKD 309 78899******************85499999********************9988 PP == domain 3 score: -2.3 bits; conditional E-value: 4.2 Sec20 42 eeeykqvedvlsrskklvkklerrdktd 69 e++ +++e++ + ++vk+le+ + 23726_FusoPortal_Gene_392 336 ENKIFNIEGSTGKIDNVVKFLENITNSK 363 5566666666677777777777765555 PP >> FtsL Cell division protein FtsL # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.0 0.2 7.4e-05 0.073 13 59 .. 236 282 .. 227 298 .. 0.90 Alignments for each domain: == domain 1 score: 13.0 bits; conditional E-value: 7.4e-05 FtsL 13 gkvlllllllvlvsavavvlithqtRqlvselekllserdkLeeewr 59 k l+ ll++ +++ +++++ h+ ++ +le+l e+++Le e + 23726_FusoPortal_Gene_392 236 TKYLYTLLIISIITVLSTIILYHNIHKSEEKLEQLEAESSSLEDEIN 282 4678889************************************9965 PP >> TolA_bind_tri TolA binding protein trimerisation # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 2.9 0.00012 0.12 25 62 .. 265 302 .. 258 305 .. 0.91 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 0.00012 TolA_bind_tri 25 qqlealqqevreLRGqiEelqyqleqleerqrdlYldl 62 ++le+l++e ++L +i e ++++e++e++ +dl + + 23726_FusoPortal_Gene_392 265 EKLEQLEAESSSLEDEINEARNEMEEIEKQHKDLLEYI 302 679******************************98776 PP >> SUR7 SUR7/PalI family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.4 0.0 1.4 1.4e+03 123 179 .. 105 162 .. 104 178 .. 0.67 2 ? 11.7 0.2 0.00014 0.14 87 128 .. 204 256 .. 181 269 .. 0.72 Alignments for each domain: == domain 1 score: -1.4 bits; conditional E-value: 1.4 SUR7 123 fislvvqllaicvspdnsrllsflnlllsllsflftllaalldtllfvivrkqvn..ke 179 f+s++ +++ + +++n ++++ + ++l++ + +ld+ +f + + +e 23726_FusoPortal_Gene_392 105 FVSIIPSFFVCR-EKKNINHYFNFDISETMLVVTEYMNNNILDISTFKLSKSSFDndEE 162 677788888774.6666666888888777777777777777777777777766664444 PP == domain 2 score: 11.7 bits; conditional E-value: 0.00014 SUR7 87 sngkvd...........lpsnlrktlsklnnltkalfilhiialvlsfislvv 128 ++ ++ lp++++++ s ++ tk l l+ii+++ + ++++ 23726_FusoPortal_Gene_392 204 YSYFEVesldftkylnfLPDDIKNKYSLYYVNTKYLYTLLIISIITVLSTIIL 256 33222255555556666***********9999999999999998877666665 PP >> Ax_dynein_light Axonemal dynein light chain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.4 0.1 3.7 3.6e+03 92 128 .. 18 54 .. 12 62 .. 0.61 2 ? 14.5 6.5 2.5e-05 0.025 123 171 .. 262 310 .. 252 318 .. 0.88 Alignments for each domain: == domain 1 score: -2.4 bits; conditional E-value: 3.7 Ax_dynein_light 92 lrmtiaayktlyessvaFgmrkalqaeqgkselekki 128 +r+t+ +++ + s + ++ +++e++k+++e+++ 23726_FusoPortal_Gene_392 18 VRNTVLNLENKFFSIFKIQIENIINEEDRKEKIEDRL 54 5555555555555555556666677777777777664 PP == domain 2 score: 14.5 bits; conditional E-value: 2.5e-05 Ax_dynein_light 123 elekkikeLeeekeelekqvaelkaklealekrekerrqeeekkheeei 171 + e+k+++Le+e ++le++++e ++++e++ek++k+ ++ ek++ +++ 23726_FusoPortal_Gene_392 262 KSEEKLEQLEAESSSLEDEINEARNEMEEIEKQHKDLLEYIEKEEYKDF 310 67899*******************************9998888776655 PP >> DUF4140 N-terminal domain of unknown function (DUF4140) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.8 0.0 4 4e+03 49 73 .. 32 53 .. 24 60 .. 0.58 2 ? 11.1 0.8 0.00039 0.39 63 96 .. 262 296 .. 247 298 .. 0.79 Alignments for each domain: == domain 1 score: -1.8 bits; conditional E-value: 4 DUF4140 49 ildvqvervpnreaeeeelkalrae 73 i +q+e+ n+e +e +++++ 23726_FusoPortal_Gene_392 32 IFKIQIENIINEEDRKE---KIEDR 53 55566666655555554...33333 PP == domain 2 score: 11.1 bits; conditional E-value: 0.00039 DUF4140 63 eeee.lkalraeleeledelaaledelaaaearla 96 ++ee l++l+ae +lede++++++e++ +e++ + 23726_FusoPortal_Gene_392 262 KSEEkLEQLEAESSSLEDEINEARNEMEEIEKQHK 296 333339**********************9999975 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 3.5 0.00069 0.68 19 78 .. 259 314 .. 249 320 .. 0.78 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.00069 Syntaxin-6_N 19 slyrrweelledtssstseeldetrteLrkalrsiewdledLeetvriveknpsk.fkide 78 +++++ e+l +++ +s++l++ +e r+++++ie++ +dL e + ek+++k fki++ 23726_FusoPortal_Gene_392 259 NIHKSEEKLEQLEA--ESSSLEDEINEARNEMEEIEKQHKDLLEYI---EKEEYKdFKISS 314 34444445555543..58999999**********************...999999999985 PP >> DUF3450 Protein of unknown function (DUF3450) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.9 2.9 0.0004 0.39 34 78 .. 262 306 .. 256 321 .. 0.80 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 0.0004 DUF3450 34 qsqkkidklddekqellaeyralkeeleslevyneqlerlvasqe 78 +s++k ++l+ e+++l++e++++++e e++e++ + l +++++ e 23726_FusoPortal_Gene_392 262 KSEEKLEQLEAESSSLEDEINEARNEMEEIEKQHKDLLEYIEKEE 306 788899999999999999999999999999999999888888776 PP >> DUF1664 Protein of unknown function (DUF1664) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.3 0.0 0.96 9.4e+02 97 120 .. 9 32 .. 7 36 .. 0.80 2 ? 10.1 1.2 0.00057 0.56 64 116 .. 256 308 .. 253 315 .. 0.89 3 ? -3.0 0.0 6.7 6.6e+03 96 115 .. 339 358 .. 331 362 .. 0.63 Alignments for each domain: == domain 1 score: -0.3 bits; conditional E-value: 0.96 DUF1664 97 seikedvesvkeavegLeskleei 120 s+i++ + v+++v +Le+k +i 23726_FusoPortal_Gene_392 9 SHIDDIEKRVRNTVLNLENKFFSI 32 678888889999999999998777 PP == domain 2 score: 10.1 bits; conditional E-value: 0.00057 DUF1664 64 LssridrvdkkldeqkeiskeikeevtevredlseikedvesvkeavegLesk 116 L ++i + ++kl++ ++ s+++++e++e+r++++ei+++ + + e +e+ e k 23726_FusoPortal_Gene_392 256 LYHNIHKSEEKLEQLEAESSSLEDEINEARNEMEEIEKQHKDLLEYIEKEEYK 308 567899999*******************************9999999876655 PP == domain 3 score: -3.0 bits; conditional E-value: 6.7 DUF1664 96 lseikedvesvkeavegLes 115 + +i+ +++++v+ Le+ 23726_FusoPortal_Gene_392 339 IFNIEGSTGKIDNVVKFLEN 358 55566666666666666654 PP >> DUF3399 Domain of unknown function (DUF3399) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.7 2.3 0.00096 0.94 4 51 .. 262 310 .. 260 324 .. 0.71 Alignments for each domain: == domain 1 score: 9.7 bits; conditional E-value: 0.00096 DUF3399 4 krnglledalelteseeeeal.ltkstsllEsqHHHLLhCLEKttnheF 51 k + +le++ +++s e+e + + + ++ +E+qH LL +EK ++F 23726_FusoPortal_Gene_392 262 KSEEKLEQLEAESSSLEDEINeARNEMEEIEKQHKDLLEYIEKEEYKDF 310 55566666444444445554404567889**************888777 PP >> FlaC_arch Flagella accessory protein C (FlaC) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.0 0.2 2.3 2.2e+03 2 14 .. 11 23 .. 10 55 .. 0.70 2 ? 12.1 6.1 0.00019 0.19 5 42 .. 263 300 .. 259 303 .. 0.90 3 ? -1.0 0.1 2.3 2.2e+03 36 51 .. 348 363 .. 328 365 .. 0.57 Alignments for each domain: == domain 1 score: -1.0 bits; conditional E-value: 2.3 FlaC_arch 2 idelEnklsklst 14 id++E+++ ++ 23726_FusoPortal_Gene_392 11 IDDIEKRVRNTVL 23 5555555555443 PP == domain 2 score: 12.1 bits; conditional E-value: 0.00019 FlaC_arch 5 lEnklsklsteletvkkeneelsksveeleenVkdlls 42 E+kl++l+ e +++++e++e +++ ee+e++ kdll+ 23726_FusoPortal_Gene_392 263 SEEKLEQLEAESSSLEDEINEARNEMEEIEKQHKDLLE 300 5999**************************99999986 PP == domain 3 score: -1.0 bits; conditional E-value: 2.3 FlaC_arch 36 nVkdllsLYEvVsnqv 51 ++ ++++ E ++n + 23726_FusoPortal_Gene_392 348 KIDNVVKFLENITNSK 363 3445555555555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (390 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 2345 (0.140318); expected 334.2 (0.02) Passed bias filter: 888 (0.0531355); expected 334.2 (0.02) Passed Vit filter: 197 (0.0117879); expected 16.7 (0.001) Passed Fwd filter: 17 (0.00101723); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 17 [number of targets reported over threshold] # CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.32 # Mc/sec: 3542.95 // [ok]