# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_40.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_40 [L=260] Description: # 51959 # 52738 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.315 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.4e-38 130.9 1.2 6.6e-38 130.3 1.2 1.2 1 ETF Electron transfer flavoprotein domain Domain annotation for each model (and alignments): >> ETF Electron transfer flavoprotein domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 130.3 1.2 3.9e-42 6.6e-38 8 179 .. 30 212 .. 26 215 .. 0.96 Alignments for each domain: == domain 1 score: 130.3 bits; conditional E-value: 3.9e-42 E.TTEE-HHHHHHHHHHHHHHHHHT.--EEEEEEES....--THHHHGGGT-SEEEEEE-GGGSS--HHHHHHHHHHHHHHH... CS ETF 8 gvdgklnpvdlealeaArrlkekag.gevtavvvGppeaeealrealaamGadkvilvddpalagydaeatakalaalikke... 88 gv+ ++n +d +ale A+rlke++g +vt +++G + a++ l+ +la Gad++ +++d+ +++ da +a+al + i+k+ 23726_FusoPortal_Gene_40 30 GVEKVVNAFDTYALEMAVRLKETKGdITVTTLSLGGEDAKNGLKNCLA-VGADEAFHIKDENYQEKDAVIIAQALFKGIQKIeeq 113 67899******************777**********************.*********************************888 PP ...--SEEEEESSHHH...HHHHHHHHHHTT---EEEESEEEEE.EEEEEEEECTTTTEEEEE--SSSSEEEEE-TTSS--.... CS ETF 89 ...dpdlvlagataig...kqvaprlAalLgvplitdvteleveggkltvtRpieggnglaevveadlpavltvrpgafep.... 163 ++d++++g+++++ +qv+ +lA L+++++t+ ++++ eg+k+++++++e g+ e ve++ p+++tv++ +ep 23726_FusoPortal_Gene_40 114 rgkKFDIIFCGKETTDfaaGQVGIMLADELNYGVVTNLVDIDTEGEKVIAKKETET--GY-EKVEVASPCLVTVNKPNYEPrypt 195 8877***********889**************************************..**.99999******************* PP .--S-TT---EEEE--H CS ETF 164 .aaimaakkkeveevev 179 + +maa+kke+ ev+ 23726_FusoPortal_Gene_40 196 iKSKMAARKKEIAEVST 212 *99**********9985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (260 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 754 (0.0451173); expected 334.2 (0.02) Passed bias filter: 462 (0.0276448); expected 334.2 (0.02) Passed Vit filter: 35 (0.0020943); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.27u 0.25s 00:00:00.52 Elapsed: 00:00:00.35 # Mc/sec: 2159.51 // [ok]