# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_444.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_444 [L=456] Description: # 487998 # 489365 # 1 # ID=1_444;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.274 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6e-56 189.8 4.8 8.1e-56 189.3 4.8 1.2 1 MnmE_helical MnmE helical domain 1.4e-38 131.5 0.0 2.9e-38 130.6 0.0 1.5 1 TrmE_N GTP-binding protein TrmE N-terminus 1.8e-25 89.2 0.8 6.6e-25 87.3 0.8 2.0 1 MMR_HSR1 50S ribosome-binding GTPase 7e-09 35.3 1.4 7e-09 35.3 1.4 1.9 2 FeoB_N Ferrous iron transport protein B 2.5e-07 30.8 1.2 0.009 16.0 0.0 3.4 3 Dynamin_N Dynamin family 2.7e-05 23.5 0.8 6e-05 22.4 0.1 1.8 2 AIG1 AIG1 family 0.00022 21.2 1.2 0.00022 21.2 1.2 3.0 4 MMR_HSR1_Xtn C-terminal region of MMR_HSR1 domain 0.0082 15.6 0.1 0.083 12.4 0.0 2.5 2 Ras Ras family ------ inclusion threshold ------ 0.023 14.5 0.9 0.089 12.6 0.0 2.3 2 RsgA_GTPase RsgA GTPase 0.029 14.5 0.0 0.093 12.9 0.0 2.0 1 Roc Ras of Complex, Roc, domain of DAPkinase 0.1 12.1 0.0 0.21 11.1 0.0 1.5 1 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-bind 0.17 12.4 1.2 1 9.9 0.1 2.8 2 Syntaxin-6_N Syntaxin 6, N-terminal 1.8 9.0 6.1 4.5 7.7 6.0 1.8 1 ABC_tran ABC transporter Domain annotation for each model (and alignments): >> MnmE_helical MnmE helical domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 189.3 4.8 6.3e-59 8.1e-56 1 206 [] 126 452 .. 126 452 .. 0.94 Alignments for each domain: == domain 1 score: 189.3 bits; conditional E-value: 6.3e-59 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF MnmE_helical 1 LtqaEavadlIdAeteaaakaalrqleGelskkikelrekllellaeleaaiDFpeedleelseeelaekleelkeelekllat 84 LtqaEav+d+I+ +te++++++l+ql+G+l++ki ++++++l+l a++ + +D+pee +++ e+l e+l+++ +e+++l+++ 23726_FusoPortal_Gene_444 126 LTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPEEGIDDPVPENLVENLKKASAEIKDLVSS 209 9*******************************************************99************************** PP xxxxxxxxxxxx........................................................................ RF MnmE_helical 85 akrgellreGik........................................................................ 96 +++g+++++Gik 23726_FusoPortal_Gene_444 210 YDKGKIIKDGIKtaiigkpnvgkssilnsllredraivthipgttrdiieeviningiplllvdtagirntddivenigveksk 293 ************************************************************************************ PP ..........................................xxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF MnmE_helical 97 ..........................................Dllkeke...ekeeeevlkiSaktgegieeLeeaike.lele 134 D++ke + + e+ ++iSa+++ gi++Le++i + +++e 23726_FusoPortal_Gene_444 294 elinsadlilyvidtsreideedfriydiintdkvigilnkiDIKKEINlskFPKIEKWIEISALSKLGIDNLENEIYKyIMNE 377 *************99999999999999888888888888888877777776555566677*******************66654 PP xx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF MnmE_helical 135 ei...eeeplltnaRhkealekalealeeakealeaglpldlvaedLrealeaLgeItGevvtedlLdeIFskFC 206 +i +++ ++tn Rhk+alek+ eal +++e++++ lp+dl+a+d+++al++L+e+tGe+++edlLd+IFs+FC 23726_FusoPortal_Gene_444 378 NIedsSQKLVITNVRHKSALEKTNEALLNIIETIDMRLPMDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFC 452 55444569******************************************************************* PP >> TrmE_N GTP-binding protein TrmE N-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 130.6 0.0 2.2e-41 2.9e-38 1 113 [] 5 123 .. 5 123 .. 0.92 Alignments for each domain: == domain 1 score: 130.6 bits; conditional E-value: 2.2e-41 -EEEE-S-SSS-SEEEEEEESTTHHHHHHTTE........T--CTEEEEEEEECT..TCEEEEEEEEEEBTTCSTTSSEEEEEE CS TrmE_N 1 TIaAlstpagkgaiaiiRvsGpkaleiakklf........eleprkallgklvdeeekevlDealvlvfkaprsyTgedvvElh 76 TIaA+stp g+g+i+i+R+sG+++l+i++k+f el++ ++ +g+++d+ ++++De+lv ++kap++yT ed++E++ 23726_FusoPortal_Gene_444 5 TIAAISTPRGEGGISIVRMSGQDSLNILEKIFkpknkkvsELKNYSINYGHIIDN--EHIVDEVLVSIMKAPNTYTREDIIEIN 86 9*******************************65555444444667999999986..889************************ PP EESSHHHHHHHHHHHHCTT-EE--CTHHHHHHHHTTS CS TrmE_N 77 lhGgpavvkavlealleagarlAepGEFtkRaflngk 113 +hGg +v+++vle +l++gar+Ae GEFtkRaflng+ 23726_FusoPortal_Gene_444 87 CHGGYLVTEKVLEVVLKNGARIAEIGEFTKRAFLNGR 123 ************************************8 PP >> MMR_HSR1 50S ribosome-binding GTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 87.3 0.8 5.1e-28 6.6e-25 2 114 .] 222 334 .. 221 334 .. 0.86 Alignments for each domain: == domain 1 score: 87.3 bits; conditional E-value: 5.1e-28 EEEEESTTSSHHHHHHHHHTS.TEEECSSTTSSSSCEEEEEEETTEEEEEEECGGTSS..HHHHHH.HHHHHHHHHHHTSEEEE CS MMR_HSR1 2 vaivGrpNvGKStLinaltge.raivsdkpgtTrdinegrvklkgkeielvDtpGlie..gaseek.glgkaflaleeadlill 81 ai+G+pNvGKS+++n+l++e raiv+++pgtTrdi+e+ ++++g ++ lvDt+G i ++ e+ g++k+ + +++adlil+ 23726_FusoPortal_Gene_444 222 TAIIGKPNVGKSSILNSLLREdRAIVTHIPGTTRDIIEEVININGIPLLLVDTAG-IRntDDIVENiGVEKSKELINSADLILY 304 69******************999********************************.6433333334599999998889****** PP EEETTTTCSHHHHHHHHHHHHHTTSEEEEEEEC CS MMR_HSR1 82 vvdavkeklkpldeeleelleeakkplilvlnk 114 v+d +++++++d ++ ++++ + ++i +lnk 23726_FusoPortal_Gene_444 305 VIDT-SREIDEEDFRIYDIIN--TDKVIGILNK 334 ***5.666*999999999984..5667778876 PP >> FeoB_N Ferrous iron transport protein B # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.3 1.4 5.4e-12 7e-09 2 152 .. 221 366 .. 220 370 .. 0.79 2 ? -2.8 0.2 3 3.8e+03 74 105 .. 396 414 .. 373 431 .. 0.52 Alignments for each domain: == domain 1 score: 35.3 bits; conditional E-value: 5.4e-12 EEEEEESTTSSHHHHHHHHHTTS.EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEE CS FeoB_N 2 tvalvGnpnvGkttlfnaltgak.qkvgNwpGvtvekkegklklkgkeveivDlPGiYslsayseeekvardflleeepdvvvn 84 + a++G+pnvGk++++n+l + v pG+t + e ++++g + +vD Gi + +++ e+ v ++ l +++d+++ 23726_FusoPortal_Gene_444 221 KTAIIGKPNVGKSSILNSLLREDrAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENIGVEKSKELINSADLILY 304 689***************987651678999****************************************9999999******* PP EEEGG.GHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHH CS FeoB_N 85 vvdat.nlernLyLtlqllelgvpvvlalnmideaekkgieidlkkLsekLgvpvvktsakkkegieel 152 v+d++ +++ + + + ++++++ +v+ +ln+id ++ i+l+k+ ++ + +++sa +k gi++l 23726_FusoPortal_Gene_444 305 VIDTSrEIDEEDFRIYDIINTD-KVIGILNKIDIKKE----INLSKFPKIE--KWIEISALSKLGIDNL 366 ***7626888888888888876.68889999997553....4444444432..3455555555555555 PP == domain 2 score: -2.8 bits; conditional E-value: 3 HHCTSSSEEEEEEEGGGHHHHHHHHHHHHHTT CS FeoB_N 74 lleeepdvvvnvvdatnlernLyLtlqllelg 105 le++ ++++n++++ +++ 23726_FusoPortal_Gene_444 396 ALEKTNEALLNIIETI-------------DMR 414 3333444444444443.............333 PP >> Dynamin_N Dynamin family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.4 0.0 0.75 9.7e+02 26 80 .. 88 144 .. 83 204 .. 0.71 2 ! 16.0 0.0 7e-06 0.009 2 34 .. 223 255 .. 222 261 .. 0.85 3 ! 11.5 0.2 0.00017 0.21 102 147 .. 268 317 .. 257 335 .. 0.81 Alignments for each domain: == domain 1 score: -0.4 bits; conditional E-value: 0.75 --SSS---S-EEEEECCT---C..CS---SSEEEET-EB--CHHHHHHHHHHHHHHH CS Dynamin_N 26 rgpnptTrrplelqlgeeeeas..eravkeelkekekkledfsevreeieketekia 80 g ++T ++le+ l++ ++ ++ k + +++ +l+++++v + i+ +tek+ 23726_FusoPortal_Gene_444 88 HGGYLVTEKVLEVVLKNGARIAeiGEFTKRAFLNGRIDLTQAEAVIDVIHGKTEKSL 144 566678999999999888885544444555555558888888888888888877765 PP == domain 2 score: 16.0 bits; conditional E-value: 7e-06 EEEEBTTTTHHHHHHHHHTS--S---SSS---S CS Dynamin_N 2 avvGsqSsGKSSvlnaLlgedilprgpnptTrr 34 a++G+ + GKSS+ln+Ll+ed + +p T r 23726_FusoPortal_Gene_444 223 AIIGKPNVGKSSILNSLLREDRAIVTHIPGTTR 255 789******************999888876654 PP == domain 3 score: 11.5 bits; conditional E-value: 0.00017 SEEEEE---B-SSSGTTS....HHHHHHHSTTEEEEEEEETTS-CCC-CH CS Dynamin_N 102 gltlvDlPGldsvnkrdq....elvkeyikkadiilavtsanhdlsnsea 147 l lvD+ G+ ++++ + e ke+i++ad+il+v + + ++ + + 23726_FusoPortal_Gene_444 268 PLLLVDTAGIRNTDDIVEnigvEKSKELINSADLILYVIDTSREIDEEDF 317 5779******99888777889999******************99986654 PP >> AIG1 AIG1 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.4 0.1 4.7e-08 6e-05 5 103 .. 224 319 .. 221 326 .. 0.86 2 ? -2.1 0.0 1.4 1.8e+03 160 184 .. 389 411 .. 367 418 .. 0.50 Alignments for each domain: == domain 1 score: 22.4 bits; conditional E-value: 4.7e-08 EESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEEEETTEEEEEEE--SCCCTTCCHHCHHHHHHHHHHHCTT-ESEEE CS AIG1 5 lvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksrtwdgkkinViDTPglfdlsvsadkiskeivrclllseegihall 88 ++Gk +GkS+ Ns+l+++ + + t+ +++ +g + +DT g+ ++++ ++i e ++ l s + +l 23726_FusoPortal_Gene_444 224 IIGKPNVGKSSILNSLLREDRAIVT-HIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENIGVEKSKELINS---ADLIL 303 69***************99875555.56999*********************************999998855444...57*** PP EEEETT.B-SHHHHHH CS AIG1 89 lvlslg.rfteedeka 103 +v++++ +++eed + 23726_FusoPortal_Gene_444 304 YVIDTSrEIDEEDFRI 319 *****97888888665 PP == domain 2 score: -2.1 bits; conditional E-value: 1.4 EETTHHHHHHHHHHHHHHHHHHHHH CS AIG1 160 fnnktaskeekeeQvkellelveai 184 n +++s ek+ + ll+ +e+i 23726_FusoPortal_Gene_444 389 TNVRHKSALEKT--NEALLNIIETI 411 333322222222..24444444433 PP >> MMR_HSR1_Xtn C-terminal region of MMR_HSR1 domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.2 0.2 0.72 9.3e+02 19 56 .. 42 78 .. 15 86 .. 0.68 2 ? -3.5 0.0 7.8 1e+04 42 52 .. 129 139 .. 119 143 .. 0.74 3 ! 21.2 1.2 1.7e-07 0.00022 57 104 .. 327 374 .. 274 375 .. 0.86 4 ? -3.0 0.0 5.6 7.3e+03 37 52 .. 435 450 .. 433 451 .. 0.76 Alignments for each domain: == domain 1 score: -0.2 bits; conditional E-value: 0.72 MMR_HSR1_Xtn 19 lvkkilkeykihnaevliredvtvddlidviegnrvYi 56 +v++ lk+y i+ +++ +e++ + l+ +++ ++Y 23726_FusoPortal_Gene_444 42 KVSE-LKNYSINYGHIIDNEHIVDEVLVSIMKAPNTYT 78 4433.788889999988888888777777777777775 PP == domain 2 score: -3.5 bits; conditional E-value: 7.8 MMR_HSR1_Xtn 42 vddlidviegn 52 ++ +idvi+g+ 23726_FusoPortal_Gene_444 129 AEAVIDVIHGK 139 57789999875 PP == domain 3 score: 21.2 bits; conditional E-value: 1.7e-07 MMR_HSR1_Xtn 57 pclyvlNKiDlisleeldelarepnsvviSaekklnldeLkekiweeL 104 +++ +lNKiD ++ +l+++ + ++ + iSa +kl++d+L ++i++++ 23726_FusoPortal_Gene_444 327 KVIGILNKIDIKKEINLSKFPKIEKWIEISALSKLGIDNLENEIYKYI 374 56889****************************************986 PP == domain 4 score: -3.0 bits; conditional E-value: 5.6 MMR_HSR1_Xtn 37 redvtvddlidviegn 52 ++++ +dl d i n 23726_FusoPortal_Gene_444 435 TGEISSEDLLDHIFSN 450 5678888999988776 PP >> Ras Ras family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.4 0.0 6.5e-05 0.083 1 67 [. 221 286 .. 221 376 .. 0.63 2 ? 0.1 0.0 0.39 5e+02 59 111 .. 369 421 .. 363 441 .. 0.79 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 6.5e-05 EEEEEESTTSSHHHHHHHHHHSS.CSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHH CS Ras 1 KlvlvGdsavGKtslllrfvkdk.FkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrel 67 K ++G+ +vGK+s+l++ +++ ++++ d ++ i+++g + l + DTAG + + + e+ 23726_FusoPortal_Gene_444 221 KTAIIGKPNVGKSSILNSLLREDrAIVTHIPGTTRDIIEEVINING--IPLLLVDTAGIRNTDDIVEN 286 7789**************9976513344455444777777777765..788899****8776666554 PP == domain 2 score: 0.1 bits; conditional E-value: 0.39 GGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEE CS Ras 59 eefkslrelyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvG 111 e +k + + ++d++ l++ ++ +++++e+ ++ + +i ++ + ++p+ L++ 23726_FusoPortal_Gene_444 369 EIYKYIMNENIEDSSQKLVITNVRHKSALEKTNEALLNIIETIDMRLPMDLMA 421 67888999999999999999999999999999988888888888666665544 PP >> RsgA_GTPase RsgA GTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.0 6.9e-05 0.089 101 132 .. 221 252 .. 194 281 .. 0.78 2 ? -0.8 0.2 0.91 1.2e+03 52 69 .. 331 353 .. 323 410 .. 0.62 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 6.9e-05 EEEEECSTTSSHHHHHHHHCTT-----S---- CS RsgA_GTPase 101 tsvlvGqSGvGKStLinallpelelktgevse 132 ++++G+ vGKS+++n+ll e+++ + ++ 23726_FusoPortal_Gene_444 221 KTAIIGKPNVGKSSILNSLLREDRAIVTHIPG 252 4789*****************99888887755 PP == domain 2 score: -0.8 bits; conditional E-value: 0.91 EEE-GGG--HHH.....HHHHHH CS RsgA_GTPase 52 vlnKiDlleeee.....eleelk 69 +lnKiD+ +e + ++e++ 23726_FusoPortal_Gene_444 331 ILNKIDIKKEINlskfpKIEKWI 353 67777777776633222222222 PP >> Roc Ras of Complex, Roc, domain of DAPkinase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 0.0 7.2e-05 0.093 1 71 [. 221 282 .. 221 337 .. 0.56 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 7.2e-05 EEEEESSTTSSHHHHHHCHCT-CCC.-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTT CS Roc 1 KivlvGdsgvGKtsllkrfvedkfs.ekekstigvdfltkevtkikglendkkvkkvklniWDtaGqerfrs 71 K ++G+ +vGK+s+l++++++++ ++ + + d++++ v +i+ + l + DtaG ++ 23726_FusoPortal_Gene_444 221 KTAIIGKPNVGKSSILNSLLREDRAiVTHIPGTTRDIIEE-VININ---------GIPLLLVDTAGIRNTDD 282 6789***************987664244444444454443.32333.........35667777777666655 PP >> ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.0 0.00017 0.21 12 61 .. 217 263 .. 211 282 .. 0.88 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 0.00017 BTT-EEEEEESTTSSHHHHHHHHHHHSSTSSEEEEEEESEEHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF ATP-synt_ab 12 vqGqrtlipgafgvGktvisqslskqsnsddaiiyvgiGergnevaevle 61 G +t+i+g+ +vGk+ i++sl+++ d+ai+ G ++ ++ev++ 23726_FusoPortal_Gene_444 217 KDGIKTAIIGKPNVGKSSILNSLLRE---DRAIVTHIPGTTRDIIEEVIN 263 5799**********************...448999998988888888875 PP >> Syntaxin-6_N Syntaxin 6, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.9 0.1 0.00078 1 33 71 .. 142 180 .. 125 252 .. 0.86 2 ? -0.3 0.1 1.2 1.5e+03 34 55 .. 387 413 .. 363 435 .. 0.65 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 0.00078 Syntaxin-6_N 33 sstseeldetrteLrkalrsiewdledLeetvriveknp 71 +s s +l+++r +Lr ++ +i++ + dL +++v p 23726_FusoPortal_Gene_444 142 KSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYP 180 3568899**************************997655 PP == domain 2 score: -0.3 bits; conditional E-value: 1.2 Syntaxin-6_N 34 s.....tseeldetrteLrkalrsiew 55 ++ l++t++ L + +++i+ 23726_FusoPortal_Gene_444 387 VitnvrHKSALEKTNEALLNIIETIDM 413 033333566677777777777777665 PP >> ABC_tran ABC transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.7 6.0 0.0035 4.5 8 42 .. 216 250 .. 214 391 .. 0.69 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.0035 EETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF ABC_tran 8 lkegekvaivGenGaGKStLlkllagllkpteGei 42 +k g k+ai+G+ GKS++l+ l+++ + +i 23726_FusoPortal_Gene_444 216 IKDGIKTAIIGKPNVGKSSILNSLLREDRAIVTHI 250 678999********************999877776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (456 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 736 (0.0440402); expected 334.2 (0.02) Passed bias filter: 391 (0.0233964); expected 334.2 (0.02) Passed Vit filter: 48 (0.00287219); expected 16.7 (0.001) Passed Fwd filter: 13 (0.000777884); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 13 [number of targets reported over threshold] # CPU time: 0.29u 0.24s 00:00:00.53 Elapsed: 00:00:00.31 # Mc/sec: 4276.15 // [ok]